Joseph D Shirk

Title(s)Assistant Professor-in-Residence, Urology
SchoolMedicine
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. A free method for patient-specific 3D-VR anatomical modeling for presurgical planning using DICOM images and open-source software. Methods. 2025 Apr; 236:10-16. Ells Z, Ludwig V, Weiner AB, Kimura K, Farolfi A, Chamie K, Shirk J, Donin NM, Reiter R, Czernin J, Calais J, Dahlbom M. PMID: 39988309.
      View in: PubMed   Mentions:    Fields:    
    2. Managing urogenital tract disorders: 10 urology pearls for primary care physicians. Cleve Clin J Med. 2024 Dec 02; 91(12):762-767. Paige NM, Shirk JD. PMID: 39622596.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    3. Trifecta Outcomes After Use of 3-Dimensional Digital Models for Planning of Robotic Prostatectomy: A Secondary Analysis of a Randomized Clinical Trial. JAMA Netw Open. 2024 Sep 03; 7(9):e2434143. Shirk JD, Reiter RE, Wallen EM, Pak RW, Ahlering T, Badani KK, Porter JR. PMID: 39283633; PMCID: PMC11406400.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    4. EarlyTect BCD, a Streamlined PENK Methylation Test in Urine DNA, Effectively Detects Bladder Cancer in Patients with Hematuria. J Mol Diagn. 2024 Jul; 26(7):613-623. Bang BR, Zhong J, Oh TJ, Lee JY, Seo Y, Woo MA, Lim JS, Na YG, Song KH, Shin JH, Lee JJ, Im CS, Kim S, Beqaj S, Shirk JD, Ke KW, Vallone J, An S. PMID: 38677548.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    5. The Effect of Digital Three-Dimensional Reality Models on Patient Counseling for Renal Masses. JSLS. 2023 Jan-Mar; 27(1). McDonald M, Shirk JD. PMID: 36818764; PMCID: PMC9913065.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    6. Effect of 3-Dimensional, Virtual Reality Models for Surgical Planning of Robotic Prostatectomy on Trifecta Outcomes: A Randomized Clinical Trial. J Urol. 2022 09; 208(3):618-625. Shirk JD, Reiter R, Wallen EM, Pak R, Ahlering T, Badani KK, Porter JR. PMID: 35848770.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    7. Management Patterns for Benign Prostatic Hyperplasia: Impact of a Patient Decision Aid. Urol Pract. 2021 Jul; 8(4):523-528. Sadik JE, Lambrechts S, Kwan L, Liu H, Shirk J, Weiser CE, Saigal C. PMID: 37145463.
      View in: PubMed   Mentions:    Fields:    
    8. Predicting Pathological Tumor Size in Prostate Cancer Based on Multiparametric Prostate Magnetic Resonance Imaging and Preoperative Findings. J Urol. 2021 02; 205(2):444-451. Pooli A, Johnson DC, Shirk J, Markovic D, Sadun TY, Sisk AE, Mohammadian Bajgiran A, Afshari Mirak S, Felker ER, Hughes AK, Raman SS, Reiter RE. PMID: 33026934.
      View in: PubMed   Mentions: 31     Fields:    Translation:Humans
    9. RE: 3D Printing, Augmented Reality, and Virtual Reality for the Assessment and Management of Kidney and Prostate Cancer: A Systematic Review. Urology. 2020 11; 145:301. Shirk JD. PMID: 32916192.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    10. Effect of 3-Dimensional Virtual Reality Models for Surgical Planning of Robotic-Assisted Partial Nephrectomy on Surgical Outcomes: A Randomized Clinical Trial. JAMA Netw Open. 2019 09 04; 2(9):e1911598. Shirk JD, Thiel DD, Wallen EM, Linehan JM, White WM, Badani KK, Porter JR. PMID: 31532520; PMCID: PMC6751754.
      View in: PubMed   Mentions: 51     Fields:    Translation:Humans
    11. The Use of 3-Dimensional, Virtual Reality Models for Surgical Planning of Robotic Partial Nephrectomy. Urology. 2019 03; 125:92-97. Shirk JD, Kwan L, Saigal C. PMID: 30597166.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    12. Decisional Quality in Patients With Small Renal Masses. Urology. 2018 Jun; 116:76-80. Shirk JD, Laviana A, Lambrechts S, Kwan L, Pagan C, Sumal A, Saigal C. PMID: 29574123.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    13. Does Patient Preference Measurement in Decision Aids Improve Decisional Conflict? A Randomized Trial in Men with Prostate Cancer. Patient. 2017 Dec; 10(6):785-798. Shirk JD, Crespi CM, Saucedo JD, Lambrechts S, Dahan E, Kaplan R, Saigal C. PMID: 28623628.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    14. Patient Function and the Value of Surgical Care for Kidney Cancer. J Urol. 2017 05; 197(5):1200-1207. Tan HJ, Shirk JD, Chamie K, Litwin MS, Hu JC. PMID: 27986531; PMCID: PMC7433987.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    15. Health status and use of partial nephrectomy in older adults with early-stage kidney cancer. Urol Oncol. 2017 04; 35(4):153.e7-153.e14. Tan HJ, Daskivich TJ, Shirk JD, Filson CP, Litwin MS, Hu JC. PMID: 27955941.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    16. Is More Really Better? An Examination of Services and Payment Patterns among Urologists from the Centers for Medicare & Medicaid Services. Urol Pract. 2017 Jul; 4(4):302-307. Shirk JD, Kwan L, Laviana AA, Chu S, Huen KH, Bergman J. PMID: 37592671.
      View in: PubMed   Mentions:    Fields:    
    17. From QOL to QALYs: Comparing nononcologic outcomes in prostate cancer survivors across treatments. Urol Oncol. 2017 02; 35(2):69-75. Shirk JD, Saigal CS. PMID: 27575917.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    18. Patient experience and quality of urologic cancer surgery in US hospitals. Cancer. 2016 08 15; 122(16):2571-8. Shirk JD, Tan HJ, Hu JC, Saigal CS, Litwin MS. PMID: 27254231.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    19. Health Insurance Status and Disparities in Kidney Cancer Care. Urol Pract. 2016 Jan; 3(1):18-24. Tan HJ, Chuang RJ, Shirk JD, Laviana AA, Hu JC. PMID: 37592704.
      View in: PubMed   Mentions: 1     Fields:    
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