Rachel Shahan

Title(s)	Assistant Professor, Molecular, Cell and Developmental Biology
School	College of Letters and Science
ORCID	0000000177029432
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Publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.

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Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics. Plant Cell. 2024 Mar 29; 36(4):812-828. Grones C, Eekhout T, Shi D, Neumann M, Berg LS, Ke Y, Shahan R, Cox KL, Gomez-Cano F, Nelissen H, Lohmann JU, Giacomello S, Martin OC, Cole B, Wang JW, Kaufmann K, Raissig MT, Palfalvi G, Greb T, Libault M, De Rybel B. PMID: 38231860; PMCID: PMC10980355.

View in: PubMed Mentions: 4 Fields:
Bot Botany Cel Cell Biology
Translation:Animals
Pluripotency of a founding field: rebranding developmental biology. Development. 2024 Feb 01; 151(3). Rogers CD, Amemiya C, Arur S, Babonis L, Barresi M, Bartlett M, Behringer R, Benham-Pyle B, Bergmann D, Blackman B, Brown CT, Browne B, Camacho J, Chabu CY, Chow I, Cleaver O, Cool J, Dennis MY, Dickinson AJ, Di Talia S, Frank M, Gillmor S, Haag ES, Hariharan I, Harland R, Husbands A, Jerome-Majewska L, Koenig K, Labonne C, Layden M, Lowe C, Mani M, Martik M, McKown K, Moens C, Mosimann C, Onyenedum J, Reed R, Rivera A, Rokhsar D, Royer L, Rutaganira F, Shahan R, Sinha N, Swalla B, Van Norman JM, Wagner DE, Wikramanayake A, Zebell S, Brady SM. PMID: 38345109; PMCID: PMC10986740.

View in: PubMed Mentions: Fields:
Bio Biology Emb Embryology
Resolving plant development in space and time with single-cell genomics. Curr Opin Plant Biol. 2023 12; 76:102444. Nolan TM, Shahan R. PMID: 37696725.

View in: PubMed Mentions: 1 Fields:
Bot Botany
Translation:Cells
Brassinosteroid gene regulatory networks at cellular resolution in the Arabidopsis root. Science. 2023 03 31; 379(6639):eadf4721. Nolan TM, Vukašinovic N, Hsu CW, Zhang J, Vanhoutte I, Shahan R, Taylor IW, Greenstreet L, Heitz M, Afanassiev A, Wang P, Szekely P, Brosnan A, Yin Y, Schiebinger G, Ohler U, Russinova E, Benfey PN. PMID: 36996230; PMCID: PMC10119888.

View in: PubMed Mentions: 17 Fields:
Sci Science
Translation:Animals
Protocol for fast scRNA-seq raw data processing using scKB and non-arbitrary quality control with COPILOT. STAR Protoc. 2022 12 16; 3(4):101729. Hsu CW, Shahan R, Nolan TM, Benfey PN, Ohler U. PMID: 36181683; PMCID: PMC9530667.

View in: PubMed Mentions: 2 Fields:
Bio Biology Sci Science
A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants. Dev Cell. 2022 02 28; 57(4):543-560.e9. Shahan R, Hsu CW, Nolan TM, Cole BJ, Taylor IW, Greenstreet L, Zhang S, Afanassiev A, Vlot AHC, Schiebinger G, Benfey PN, Ohler U. PMID: 35134336; PMCID: PMC9014886.

View in: PubMed Mentions: 63 Fields:
Cel Cell Biology Emb Embryology
Translation:Animals Cells
Single-cell analysis of cell identity in the Arabidopsis root apical meristem: insights and opportunities. J Exp Bot. 2021 10 13; 72(19):6679-6686. Shahan R, Nolan TM, Benfey PN. PMID: 34018001; PMCID: PMC8513161.

View in: PubMed Mentions: 11 Fields:
Bot Botany
Translation:Animals
Editor profile: Siobhan M. Brady. Plant Cell. 2021 05 05; 33(3):441-444. Shahan R. PMID: 33955488; PMCID: PMC8136905.

View in: PubMed Mentions: Fields:
Bot Botany Cel Cell Biology
Translation:Humans Animals
Tempting Fate: A Guanylate-Binding Protein Maintains Tomato Fruit Cell Differentiation. Plant Cell. 2020 10; 32(10):3047-3048. Shahan R. PMID: 32796122; PMCID: PMC7534466.

View in: PubMed Mentions: Fields:
Bot Botany Cel Cell Biology
Translation:Animals
It's All in the Neighborhood: SHORTROOT-Mediated Intercellular Signals Coordinate Phloem Development in the Root. Plant Cell. 2020 05; 32(5):1350-1351. Shahan R. PMID: 32132130; PMCID: PMC7203923.

View in: PubMed Mentions: Fields:
Bot Botany Cel Cell Biology
Translation:Animals
The Cold Never Bothered Me Anyway: DELLA-Interacting GROWTH REGULATING FACTORS Mediate Plant Growth in Cold Stress. Plant Cell. 2020 04; 32(4):797-798. Shahan R. PMID: 32060177; PMCID: PMC7145467.

View in: PubMed Mentions: 1 Fields:
Bot Botany Cel Cell Biology
A Co-opted Regulator of Lateral Root Development Controls Nodule Organogenesis in Lotus. Dev Cell. 2020 01 06; 52(1):6-7. Shahan R, Benfey PN. PMID: 31951556.

View in: PubMed Mentions: 2 Fields:
Cel Cell Biology Emb Embryology
Translation:Animals
Father Knows Best? Small RNA Pathway Controls Endosperm Response to Paternal Genomic Dosage. Plant Cell. 2019 07; 31(7):1425-1426. Shahan R. PMID: 31076538; PMCID: PMC6635868.

View in: PubMed Mentions: Fields:
Bot Botany Cel Cell Biology
Translation:Animals Cells
Identification of genes preferentially expressed in wild strawberry receptacle fruit and demonstration of their promoter activities. Hortic Res. 2019; 6:50. Shahan R, Li D, Liu Z. PMID: 31044078; PMCID: PMC6491448.

View in: PubMed Mentions: 3
The Future is Now: Gene Expression Dynamics at Single Cell Resolution. Plant Cell. 2019 05; 31(5):933-934. Shahan R. PMID: 30979794; PMCID: PMC6533012.

View in: PubMed Mentions: 3 Fields:
Bot Botany Cel Cell Biology
Translation:Animals
Consensus Coexpression Network Analysis Identifies Key Regulators of Flower and Fruit Development in Wild Strawberry. Plant Physiol. 2018 09; 178(1):202-216. Shahan R, Zawora C, Wight H, Sittmann J, Wang W, Mount SM, Liu Z. PMID: 29991484; PMCID: PMC6130042.

View in: PubMed Mentions: 32 Fields:
Phy Physiology
Translation:Animals Cells
Re-annotation of the woodland strawberry (Fragaria vesca) genome. BMC Genomics. 2015 Jan 27; 16:29. Darwish O, Shahan R, Liu Z, Slovin JP, Alkharouf NW. PMID: 25623424; PMCID: PMC4318131.

View in: PubMed Mentions: 35 Fields:
Gen Genetics
Translation:Animals Cells
Genome-scale transcriptomic insights into early-stage fruit development in woodland strawberry Fragaria vesca. Plant Cell. 2013 Jun; 25(6):1960-78. Kang C, Darwish O, Geretz A, Shahan R, Alkharouf N, Liu Z. PMID: 23898027; PMCID: PMC3723606.

View in: PubMed Mentions: 141 Fields:
Bot Botany Cel Cell Biology
Translation:Animals Cells