David K Jacobs

Title(s)Professor, Ecology And Evolutionary Biology
SchoolCollege of Letters and Science
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    Title(s)Professor, Earth, Planetary, and Space Sciences

    Title(s)Professor, Institute of the Environment and Sustainability


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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Reference genome for the endangered, genetically subdivided, northern tidewater goby, Eucyclogobius newberryi. J Hered. 2024 Oct 05. Jacobs DK, Kinziger A, Abrecht M, McCraney WT, Hà BA, Spies BT, Heath-Heckman E, Marimuhtu MPA, Nguyen O, Fairbairn CW, Seligmann WE, Escalona M, Miller C, Shaffer HB. PMID: 39367793.
      View in: PubMed   Mentions:    Fields:    
    2. Genetic structure and historic demography of endangered unarmoured threespine stickleback at southern latitudes signals a potential new management approach. Mol Ecol. 2022 12; 31(24):6515-6530. Turba R, Richmond JQ, Fitz-Gibbon S, Morselli M, Fisher RN, Swift CC, Ruiz-Campos G, Backlin AR, Dellith C, Jacobs DK. PMID: 36205603; PMCID: PMC10092051.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    3. First sequencing of ancient coral skeletal proteins. Sci Rep. 2020 11 10; 10(1):19407. Drake JL, Whitelegge JP, Jacobs DK. PMID: 33173075; PMCID: PMC7655939.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    4. Mechanisms of cnidocyte development in the moon jellyfish Aurelia. Evol Dev. 2019 03; 21(2):72-81. Gold DA, Lau CLF, Fuong H, Kao G, Hartenstein V, Jacobs DK. PMID: 30623570; PMCID: PMC7211293.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    5. The genome of the jellyfish Aurelia and the evolution of animal complexity. Nat Ecol Evol. 2019 01; 3(1):96-104. Gold DA, Katsuki T, Li Y, Yan X, Regulski M, Ibberson D, Holstein T, Steele RE, Jacobs DK, Greenspan RJ. PMID: 30510179.
      View in: PubMed   Mentions: 45     Fields:    Translation:Animals
    6. How sea level change mediates genetic divergence in coastal species across regions with varying tectonic and sediment processes. Mol Ecol. 2018 02; 27(4):994-1011. Dolby GA, Ellingson RA, Findley LT, Jacobs DK. PMID: 29336083.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    7. Mitogenomics supports an unexpected taxonomic relationship for the extinct diving duck Chendytes lawi and definitively places the extinct Labrador Duck. Mol Phylogenet Evol. 2018 05; 122:102-109. Buckner JC, Ellingson R, Gold DA, Jones TL, Jacobs DK. PMID: 29247849.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    8. Introgression between ecologically distinct species following increased salinity in the Colorado Delta- Worldwide implications for impacted estuary diversity. PeerJ. 2017; 5:e4056. Lau CLF, Jacobs DK. PMID: 29250463; PMCID: PMC5731342.
      View in: PubMed   Mentions: 4     Fields:    
    9. Sea-level driven glacial-age refugia and post-glacial mixing on subtropical coasts, a palaeohabitat and genetic study. Proc Biol Sci. 2016 Nov 30; 283(1843). Dolby GA, Hechinger R, Ellingson RA, Findley LT, Lorda J, Jacobs DK. PMID: 27903870; PMCID: PMC5136581.
      View in: PubMed   Mentions: 8     Fields:    Translation:Animals
    10. Cell tracking supports secondary gastrulation in the moon jellyfish Aurelia. Dev Genes Evol. 2016 11; 226(6):383-387. Gold DA, Nakanishi N, Hensley NM, Hartenstein V, Jacobs DK. PMID: 27535146.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    11. A New Species of the Bay Goby Genus Eucyclogobius, Endemic to Southern California: Evolution, Conservation, and Decline. PLoS One. 2016; 11(7):e0158543. Swift CC, Spies B, Ellingson RA, Jacobs DK. PMID: 27462700; PMCID: PMC4963035.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    12. Benefits of commercial weight-loss programs on blood pressure and lipids: a systematic review. Prev Med. 2016 09; 90:86-99. Mehta AK, Doshi RS, Chaudhry ZW, Jacobs DK, Vakil RM, Lee CJ, Bleich SN, Clark JM, Gudzune KA. PMID: 27373206; PMCID: PMC5300307.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansPHPublic Health
    13. Direct comparisons of commercial weight-loss programs on weight, waist circumference, and blood pressure: a systematic review. BMC Public Health. 2016 06 01; 16:460. Vakil RM, Doshi RS, Mehta AK, Chaudhry ZW, Jacobs DK, Lee CJ, Bleich SN, Clark JM, Gudzune KA. PMID: 27246464; PMCID: PMC4888663.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    14. Temporal genetic analysis of the endangered tidewater goby: extinction-colonization dynamics or drift in isolation? Mol Ecol. 2015 Nov; 24(22):5544-60. Kinziger AP, Hellmair M, McCraney WT, Jacobs DK, Goldsmith G. PMID: 26460923.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    15. Ancestral state reconstruction of ontogeny supports a bilaterian affinity for Dickinsonia. Evol Dev. 2015 Nov-Dec; 17(6):315-24. Gold DA, Runnegar B, Gehling JG, Jacobs DK. PMID: 26492825.
      View in: PubMed   Mentions: 18     Fields:    Translation:Animals
    16. Structural and Developmental Disparity in the Tentacles of the Moon Jellyfish Aurelia sp.1. PLoS One. 2015; 10(8):e0134741. Gold DA, Nakanishi N, Hensley NM, Cozzolino K, Tabatabaee M, Martin M, Hartenstein V, Jacobs DK. PMID: 26241309; PMCID: PMC4524682.
      View in: PubMed   Mentions: 7     Fields:    Translation:Animals
    17. Gene Expression Data from the Moon Jelly, Aurelia, Provide Insights into the Evolution of the Combinatorial Code Controlling Animal Sense Organ Development. PLoS One. 2015; 10(7):e0132544. Nakanishi N, Camara AC, Yuan DC, Gold DA, Jacobs DK. PMID: 26225420; PMCID: PMC4520661.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    18. Efficacy of commercial weight-loss programs: an updated systematic review. Ann Intern Med. 2015 Apr 07; 162(7):501-12. Gudzune KA, Doshi RS, Mehta AK, Chaudhry ZW, Jacobs DK, Vakil RM, Lee CJ, Bleich SN, Clark JM. PMID: 25844997; PMCID: PMC4446719.
      View in: PubMed   Mentions: 134     Fields:    Translation:Humans
    19. The early expansion and evolutionary dynamics of POU class genes. Mol Biol Evol. 2014 Dec; 31(12):3136-47. Gold DA, Gates RD, Jacobs DK. PMID: 25261405; PMCID: PMC4245813.
      View in: PubMed   Mentions: 27     Fields:    Translation:AnimalsCells
    20. Canopy flow analysis reveals the advantage of size in the oldest communities of multicellular eukaryotes. Curr Biol. 2014 Feb 03; 24(3):305-9. Ghisalberti M, Gold DA, Laflamme M, Clapham ME, Narbonne GM, Summons RE, Johnston DT, Jacobs DK. PMID: 24462003; PMCID: PMC4428146.
      View in: PubMed   Mentions: 15     Fields:    Translation:Animals
    21. Attempted DNA extraction from a Rancho La Brea Columbian mammoth (Mammuthus columbi): prospects for ancient DNA from asphalt deposits. Ecol Evol. 2014 Feb; 4(4):329-36. Gold DA, Robinson J, Farrell AB, Harris JM, Thalmann O, Jacobs DK. PMID: 24634719; PMCID: PMC3936381.
      View in: PubMed   Mentions: 3  
    22. Regional differences in seasonal timing of rainfall discriminate between genetically distinct East African giraffe taxa. PLoS One. 2013; 8(10):e77191. Thomassen HA, Freedman AH, Brown DM, Buermann W, Jacobs DK. PMID: 24194870; PMCID: PMC3806738.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    23. Convergent evolution of ecomorphological adaptations in geographically isolated Bay gobies (Teleostei: Gobionellidae) of the temperate North Pacific. Mol Phylogenet Evol. 2014 Jan; 70:464-77. Ellingson RA, Swift CC, Findley LT, Jacobs DK. PMID: 24148989.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    24. Expression of the Lhx genes apterous and lim1 in an errant polychaete: implications for bilaterian appendage evolution, neural development, and muscle diversification. Evodevo. 2013 Feb 01; 4(1):4. Winchell CJ, Jacobs DK. PMID: 23369627; PMCID: PMC3579752.
      View in: PubMed   Mentions: 4  
    25. Stem cell dynamics in Cnidaria: are there unifying principles? Dev Genes Evol. 2013 Mar; 223(1-2):53-66. Gold DA, Jacobs DK. PMID: 23179637; PMCID: PMC7211294.
      View in: PubMed   Mentions: 41     Fields:    Translation:AnimalsCells
    26. Flying shells: historical dispersal of marine snails across Central America. Proc Biol Sci. 2012 Mar 22; 279(1731):1061-7. Miura O, Torchin ME, Bermingham E, Jacobs DK, Hechinger RF. PMID: 21920976; PMCID: PMC3267146.
      View in: PubMed   Mentions: 10     Fields:    Translation:Animals
    27. Expression of Distal-less, dachshund, and optomotor blind in Neanthes arenaceodentata (Annelida, Nereididae) does not support homology of appendage-forming mechanisms across the Bilateria. Dev Genes Evol. 2010 Dec; 220(9-10):275-95. Winchell CJ, Valencia JE, Jacobs DK. PMID: 21116826; PMCID: PMC3005117.
      View in: PubMed   Mentions: 8     Fields:    Translation:Animals
    28. Rampant drift in artificially fragmented populations of the endangered tidewater goby (Eucyclogobius newberryi). Mol Ecol. 2010 Aug; 19(16):3315-27. McCraney WT, Goldsmith G, Jacobs DK, Kinziger AP. PMID: 20666998.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    29. Evolutionary origin of rhopalia: insights from cellular-level analyses of Otx and POU expression patterns in the developing rhopalial nervous system. Evol Dev. 2010 Jul-Aug; 12(4):404-15. Nakanishi N, Yuan D, Hartenstein V, Jacobs DK. PMID: 20618436.
      View in: PubMed   Mentions: 16     Fields:    Translation:Animals
    30. Confocal analysis of nervous system architecture in direct-developing juveniles of Neanthes arenaceodentata (Annelida, Nereididae). Front Zool. 2010 Jun 16; 7:17. Winchell CJ, Valencia JE, Jacobs DK. PMID: 20553614; PMCID: PMC2909921.
      View in: PubMed   Mentions: 17  
    31. Phylogeography of the diamond turbot (Hypsopsetta guttulata) across the Baja California Peninsula. Mar Biol. 2010; 157(1):123-134. Schinske JN, Bernardi G, Jacobs DK, Routman EJ. PMID: 24391239; PMCID: PMC3873029.
      View in: PubMed   Mentions: 1  
    32. Paleontology. Flourishing after the end-Permian mass extinction. Science. 2009 Aug 28; 325(5944):1079-80. Marshall CR, Jacobs DK. PMID: 19713513.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    33. Development of the rhopalial nervous system in Aurelia sp.1 (Cnidaria, Scyphozoa). Dev Genes Evol. 2009 Jun; 219(6):301-17. Nakanishi N, Hartenstein V, Jacobs DK. PMID: 19543911; PMCID: PMC2706374.
      View in: PubMed   Mentions: 23     Fields:    Translation:AnimalsCells
    34. Early development, pattern, and reorganization of the planula nervous system in Aurelia (Cnidaria, Scyphozoa). Dev Genes Evol. 2008 Oct; 218(10):511-24. Nakanishi N, Yuan D, Jacobs DK, Hartenstein V. PMID: 18850237.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    35. Embryonic development and metamorphosis of the scyphozoan Aurelia. Dev Genes Evol. 2008 Oct; 218(10):525-39. Yuan D, Nakanishi N, Jacobs DK, Hartenstein V. PMID: 18850238.
      View in: PubMed   Mentions: 25     Fields:    Translation:Animals
    36. Extensive population genetic structure in the giraffe. BMC Biol. 2007 Dec 21; 5:57. Brown DM, Brenneman RA, Koepfli KP, Pollinger JP, Milá B, Georgiadis NJ, Louis EE, Grether GF, Jacobs DK, Wayne RK. PMID: 18154651; PMCID: PMC2254591.
      View in: PubMed   Mentions: 44     Fields:    Translation:AnimalsCells
    37. Terminal addition, the Cambrian radiation and the Phanerozoic evolution of bilaterian form. Evol Dev. 2005 Nov-Dec; 7(6):498-514. Jacobs DK, Hughes NC, Fitz-Gibbon ST, Winchell CJ. PMID: 16336405.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimals
    38. The end of everything: metazoan terminal addition. Evol Dev. 2005 Nov-Dec; 7(6):497. Hughes NC, Jacobs DK. PMID: 16336404.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    39. sine oculis in basal Metazoa. Dev Genes Evol. 2004 Jul; 214(7):342-51. Bebenek IG, Gates RD, Morris J, Hartenstein V, Jacobs DK. PMID: 15221378.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    40. Gene fishing: the use of a simple protocol to isolate multiple homeodomain classes from diverse invertebrate taxa. J Mol Evol. 2003 Apr; 56(4):509-16. Lee SE, Gates RD, Jacobs DK. PMID: 12718333.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    41. AmphiNk2-tin, an amphioxus homeobox gene expressed in myocardial progenitors: insights into evolution of the vertebrate heart. Dev Biol. 2003 Mar 01; 255(1):128-37. Holland ND, Venkatesh TV, Holland LZ, Jacobs DK, Bodmer R. PMID: 12618138.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    42. Developmental genes and the reconstruction of metazoan evolution--implications of evolutionary loss, limits on inference of ancestry and type 2 errors. Integr Comp Biol. 2003 Feb; 43(1):11-8. Jacobs DK, Gates RD. PMID: 21680405.
      View in: PubMed   Mentions: 6     Fields:    
    43. Embryonic development in the primitive bilaterian Neochildia fusca: normal morphogenesis and isolation of POU genes Brn-1 and Brn-3. Dev Genes Evol. 2002 Mar; 212(2):55-69. Ramachandra NB, Gates RD, Ladurner P, Jacobs DK, Hartenstein V. PMID: 11914937.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    44. Molluscan engrailed expression, serial organization, and shell evolution. Evol Dev. 2000 Nov-Dec; 2(6):340-7. Jacobs DK, Wray CG, Wedeen CJ, Kostriken R, DeSalle R, Staton JL, Gates RD, Lindberg DR. PMID: 11256378.
      View in: PubMed   Mentions: 26     Fields:    Translation:Animals
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