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Automating the Human Connectome Project's Temporal ICA Pipeline. bioRxiv. 2024 Jan 16.
Yang C, Coalson TS, Smith SM, Elam JS, Van Essen DC, Glasser MF. PMID: 38293188; PMCID: PMC10827070.
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PubMed Mentions:
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ICAM-Reg: Interpretable Classification and Regression With Feature Attribution for Mapping Neurological Phenotypes in Individual Scans. IEEE Trans Med Imaging. 2023 04; 42(4):959-970.
Bass C, Silva MD, Sudre C, Williams LZJ, Sousa HS, Tudosiu PD, Alfaro-Almagro F, Fitzgibbon SP, Glasser MF, Smith SM, Robinson EC. PMID: 36374873; PMCID: PMC10315989.
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PubMed Mentions:
3 Fields:
Translation:
Humans
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Functional connectivity between interoceptive brain regions is associated with distinct health-related domains: A population-based neuroimaging study. Hum Brain Mapp. 2023 06 01; 44(8):3210-3221.
Luettich A, Sievers C, Alfaro Almagro F, Allen M, Jbabdi S, Smith SM, Pattinson KTS. PMID: 36939141; PMCID: PMC10171512.
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PubMed Mentions: Fields:
Translation:
Humans
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Structural and functional asymmetry of the neonatal cerebral cortex. Nat Hum Behav. 2023 Jun; 7(6):942-955.
Williams LZJ, Fitzgibbon SP, Bozek J, Winkler AM, Dimitrova R, Poppe T, Schuh A, Makropoulos A, Cupitt J, O'Muircheartaigh J, Duff EP, Cordero-Grande L, Price AN, Hajnal JV, Rueckert D, Smith SM, Edwards AD, Robinson EC. PMID: 36928781.
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PubMed Mentions:
10 Fields:
Translation:
Humans
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Amplitudes of resting-state functional networks - investigation into their correlates and biophysical properties. Neuroimage. 2023 01; 265:119779.
Lee S, Bijsterbosch JD, Almagro FA, Elliott L, McCarthy P, Taschler B, Sala-Llonch R, Beckmann CF, Duff EP, Smith SM, Douaud G. PMID: 36462729; PMCID: PMC10933815.
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PubMed Mentions: Fields:
Translation:
Humans
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Causal inference on neuroimaging data with Mendelian randomisation. Neuroimage. 2022 09; 258:119385.
Taschler B, Smith SM, Nichols TE. PMID: 35714886; PMCID: PMC10933777.
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PubMed Mentions:
6 Fields:
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The Developing Human Connectome Project Neonatal Data Release. Front Neurosci. 2022; 16:886772.
Edwards AD, Rueckert D, Smith SM, Abo Seada S, Alansary A, Almalbis J, Allsop J, Andersson J, Arichi T, Arulkumaran S, Bastiani M, Batalle D, Baxter L, Bozek J, Braithwaite E, Brandon J, Carney O, Chew A, Christiaens D, Chung R, Colford K, Cordero-Grande L, Counsell SJ, Cullen H, Cupitt J, Curtis C, Davidson A, Deprez M, Dillon L, Dimitrakopoulou K, Dimitrova R, Duff E, Falconer S, Farahibozorg SR, Fitzgibbon SP, Gao J, Gaspar A, Harper N, Harrison SJ, Hughes EJ, Hutter J, Jenkinson M, Jbabdi S, Jones E, Karolis V, Kyriakopoulou V, Lenz G, Makropoulos A, Malik S, Mason L, Mortari F, Nosarti C, Nunes RG, O'Keeffe C, O'Muircheartaigh J, Patel H, Passerat-Palmbach J, Pietsch M, Price AN, Robinson EC, Rutherford MA, Schuh A, Sotiropoulos S, Steinweg J, Teixeira RPAG, Tenev T, Tournier JD, Tusor N, Uus A, Vecchiato K, Williams LZJ, Wright R, Wurie J, Hajnal JV. PMID: 35677357; PMCID: PMC9169090.
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PubMed Mentions:
24
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Deep neural networks learn general and clinically relevant representations of the ageing brain. Neuroimage. 2022 08 01; 256:119210.
Leonardsen EH, Peng H, Kaufmann T, Agartz I, Andreassen OA, Celius EG, Espeseth T, Harbo HF, Høgestøl EA, Lange AM, Marquand AF, Vidal-Piñeiro D, Roe JM, Selbæk G, Sørensen Ø, Smith SM, Westlye LT, Wolfers T, Wang Y. PMID: 35462035; PMCID: PMC7614754.
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PubMed Mentions:
26 Fields:
Translation:
Humans
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Multi-dynamic modelling reveals strongly time-varying resting fMRI correlations. Med Image Anal. 2022 04; 77:102366.
Pervaiz U, Vidaurre D, Gohil C, Smith SM, Woolrich MW. PMID: 35131700; PMCID: PMC8907871.
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PubMed Mentions:
5 Fields:
Translation:
Humans
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Erratum to: The Developing Human Connectome Project: typical and disrupted perinatal functional connectivity. Brain. 2021 Oct 22; 144(9):e80.
Eyre M, Fitzgibbon SP, Ciarrusta J, Cordero-Grande L, Price AN, Poppe T, Schuh A, Hughes E, O'Keeffe C, Brandon J, Cromb D, Vecchiato K, Andersson J, Duff EP, Counsell SJ, Smith SM, Rueckert D, Hajnal JV, Arichi T, O'Muircheartaigh J, Batalle D, Edwards AD. PMID: 34219164; PMCID: PMC8536930.
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PubMed Mentions:
1 Fields:
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The Human Connectome Project: A retrospective. Neuroimage. 2021 12 01; 244:118543.
Elam JS, Glasser MF, Harms MP, Sotiropoulos SN, Andersson JLR, Burgess GC, Curtiss SW, Oostenveld R, Larson-Prior LJ, Schoffelen JM, Hodge MR, Cler EA, Marcus DM, Barch DM, Yacoub E, Smith SM, Ugurbil K, Van Essen DC. PMID: 34508893; PMCID: PMC9387634.
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PubMed Mentions:
49 Fields:
Translation:
Humans
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Hierarchical modelling of functional brain networks in population and individuals from big fMRI data. Neuroimage. 2021 11; 243:118513.
Farahibozorg SR, Bijsterbosch JD, Gong W, Jbabdi S, Smith SM, Harrison SJ, Woolrich MW. PMID: 34450262; PMCID: PMC8526871.
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PubMed Mentions:
6 Fields:
Translation:
Humans
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The Developing Human Connectome Project: typical and disrupted perinatal functional connectivity. Brain. 2021 08 17; 144(7):2199-2213.
Eyre M, Fitzgibbon SP, Ciarrusta J, Cordero-Grande L, Price AN, Poppe T, Schuh A, Hughes E, O'Keeffe C, Brandon J, Cromb D, Vecchiato K, Andersson J, Duff EP, Counsell SJ, Smith SM, Rueckert D, Hajnal JV, Arichi T, O'Muircheartaigh J, Batalle D, Edwards AD. PMID: 33734321; PMCID: PMC8370420.
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PubMed Mentions:
34 Fields:
Translation:
Humans
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Phenotype discovery from population brain imaging. Med Image Anal. 2021 07; 71:102050.
Gong W, Beckmann CF, Smith SM. PMID: 33905882; PMCID: PMC8850869.
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PubMed Mentions:
9 Fields:
Translation:
Humans
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Learning patterns of the ageing brain in MRI using deep convolutional networks. Neuroimage. 2021 01 01; 224:117401.
Dinsdale NK, Bluemke E, Smith SM, Arya Z, Vidaurre D, Jenkinson M, Namburete AIL. PMID: 32979523.
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PubMed Mentions:
36 Fields:
Translation:
Humans
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The developing Human Connectome Project (dHCP) automated resting-state functional processing framework for newborn infants. Neuroimage. 2020 12; 223:117303.
Fitzgibbon SP, Harrison SJ, Jenkinson M, Baxter L, Robinson EC, Bastiani M, Bozek J, Karolis V, Cordero Grande L, Price AN, Hughes E, Makropoulos A, Passerat-Palmbach J, Schuh A, Gao J, Farahibozorg SR, O'Muircheartaigh J, Ciarrusta J, O'Keeffe C, Brandon J, Arichi T, Rueckert D, Hajnal JV, Edwards AD, Smith SM, Duff E, Andersson J. PMID: 32866666; PMCID: PMC7762845.
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PubMed Mentions:
37 Fields:
Translation:
Humans
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Modelling subject variability in the spatial and temporal characteristics of functional modes. Neuroimage. 2020 11 15; 222:117226.
Harrison SJ, Bijsterbosch JD, Segerdahl AR, Fitzgibbon SP, Farahibozorg SR, Duff EP, Smith SM, Woolrich MW. PMID: 32771617; PMCID: PMC7779373.
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PubMed Mentions:
17 Fields:
Translation:
Humans
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Impaired glucose metabolism in patients with diabetes, prediabetes, and obesity is associated with severe COVID-19. J Med Virol. 2021 01; 93(1):409-415.
Smith SM, Boppana A, Traupman JA, Unson E, Maddock DA, Chao K, Dobesh DP, Brufsky A, Connor RI. PMID: 32589756; PMCID: PMC7361926.
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PubMed Mentions:
89 Fields:
Translation:
HumansCells
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Permutation inference for canonical correlation analysis. Neuroimage. 2020 10 15; 220:117065.
Winkler AM, Renaud O, Smith SM, Nichols TE. PMID: 32603857; PMCID: PMC7573815.
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PubMed Mentions:
20 Fields:
Translation:
Humans
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Confound modelling in UK Biobank brain imaging. Neuroimage. 2021 01 01; 224:117002.
Alfaro-Almagro F, McCarthy P, Afyouni S, Andersson JLR, Bastiani M, Miller KL, Nichols TE, Smith SM. PMID: 32502668; PMCID: PMC7610719.
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PubMed Mentions:
73 Fields:
Translation:
Humans
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A Symmetric Prior for the Regularisation of Elastic Deformations: Improved anatomical plausibility in nonlinear image registration. Neuroimage. 2020 10 01; 219:116962.
Lange FJ, Ashburner J, Smith SM, Andersson JLR. PMID: 32497785; PMCID: PMC7610794.
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PubMed Mentions:
5 Fields:
Translation:
Humans
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The UK Biobank imaging enhancement of 100,000 participants: rationale, data collection, management and future directions. Nat Commun. 2020 05 26; 11(1):2624.
Littlejohns TJ, Holliday J, Gibson LM, Garratt S, Oesingmann N, Alfaro-Almagro F, Bell JD, Boultwood C, Collins R, Conroy MC, Crabtree N, Doherty N, Frangi AF, Harvey NC, Leeson P, Miller KL, Neubauer S, Petersen SE, Sellors J, Sheard S, Smith SM, Sudlow CLM, Matthews PM, Allen NE. PMID: 32457287; PMCID: PMC7250878.
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PubMed Mentions:
194 Fields:
Translation:
Humans
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Brain aging comprises many modes of structural and functional change with distinct genetic and biophysical associations. Elife. 2020 03 05; 9.
Smith SM, Elliott LT, Alfaro-Almagro F, McCarthy P, Nichols TE, Douaud G, Miller KL. PMID: 32134384; PMCID: PMC7162660.
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PubMed Mentions:
68 Fields:
Translation:
Humans
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Optimising network modelling methods for fMRI. Neuroimage. 2020 05 01; 211:116604.
Pervaiz U, Vidaurre D, Woolrich MW, Smith SM. PMID: 32062083; PMCID: PMC7086233.
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PubMed Mentions:
89 Fields:
Translation:
Humans
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Denoising scanner effects from multimodal MRI data using linked independent component analysis. Neuroimage. 2020 03; 208:116388.
Li H, Smith SM, Gruber S, Lukas SE, Silveri MM, Hill KP, Killgore WDS, Nickerson LD. PMID: 31765802.
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PubMed Mentions:
14 Fields:
Translation:
Humans
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Hippocampal volume across age: Nomograms derived from over 19,700 people in UK Biobank. Neuroimage Clin. 2019; 23:101904.
Nobis L, Manohar SG, Smith SM, Alfaro-Almagro F, Jenkinson M, Mackay CE, Husain M. PMID: 31254939; PMCID: PMC6603440.
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PubMed Mentions:
54 Fields:
Translation:
Humans
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Estimation of brain age delta from brain imaging. Neuroimage. 2019 10 15; 200:528-539.
Smith SM, Vidaurre D, Alfaro-Almagro F, Nichols TE, Miller KL. PMID: 31201988; PMCID: PMC6711452.
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PubMed Mentions:
134 Fields:
Translation:
Humans
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Effective degrees of freedom of the Pearson's correlation coefficient under autocorrelation. Neuroimage. 2019 10 01; 199:609-625.
Afyouni S, Smith SM, Nichols TE. PMID: 31158478; PMCID: PMC6693558.
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PubMed Mentions:
27 Fields:
Translation:
Humans
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The relationship between spatial configuration and functional connectivity of brain regions revisited. Elife. 2019 05 08; 8.
Bijsterbosch JD, Beckmann CF, Woolrich MW, Smith SM, Harrison SJ. PMID: 31066676; PMCID: PMC6541435.
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PubMed Mentions:
29 Fields:
Translation:
Humans
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Classification of temporal ICA components for separating global noise from fMRI data: Reply to Power. Neuroimage. 2019 08 15; 197:435-438.
Glasser MF, Coalson TS, Bijsterbosch JD, Harrison SJ, Harms MP, Anticevic A, Van Essen DC, Smith SM. PMID: 31026516; PMCID: PMC6591096.
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PubMed Mentions:
16 Fields:
Translation:
Humans
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The spatial correspondence and genetic influence of interhemispheric connectivity with white matter microstructure. Nat Neurosci. 2019 05; 22(5):809-819.
Mollink J, Smith SM, Elliott LT, Kleinnijenhuis M, Hiemstra M, Alfaro-Almagro F, Marchini J, van Cappellen van Walsum AM, Jbabdi S, Miller KL. PMID: 30988526; PMCID: PMC6517273.
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PubMed Mentions:
27 Fields:
Translation:
Humans
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Multidisciplinary sarcoma care. Curr Probl Surg. 2018 Dec; 55(12):517-580.
Pollock RE, Payne JE, Rogers AD, Smith SM, Iwenofu OH, Valerio IL, Zomerlei TA, Howard JH, Dornbos D, Galgano MA, Goulart C, Mendel E, Miller ED, Xu-Welliver M, Martin DD, Haglund KE, Bupathi M, Chen JL, Yeager ND. PMID: 30526918.
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PubMed Mentions:
1 Fields:
Translation:
Humans
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The Lifespan Human Connectome Project in Aging: An overview. Neuroimage. 2019 01 15; 185:335-348.
Bookheimer SY, Salat DH, Terpstra M, Ances BM, Barch DM, Buckner RL, Burgess GC, Curtiss SW, Diaz-Santos M, Elam JS, Fischl B, Greve DN, Hagy HA, Harms MP, Hatch OM, Hedden T, Hodge C, Japardi KC, Kuhn TP, Ly TK, Smith SM, Somerville LH, Ugurbil K, van der Kouwe A, Van Essen D, Woods RP, Yacoub E. PMID: 30332613; PMCID: PMC6649668.
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PubMed Mentions:
129 Fields:
Translation:
Humans
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Genome-wide association studies of brain imaging phenotypes in UK Biobank. Nature. 2018 10; 562(7726):210-216.
Elliott LT, Sharp K, Alfaro-Almagro F, Shi S, Miller KL, Douaud G, Marchini J, Smith SM. PMID: 30305740; PMCID: PMC6786974.
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PubMed Mentions:
282 Fields:
Translation:
HumansCells
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Spatial parcellations, spectral filtering, and connectivity measures in fMRI: Optimizing for discrimination. Hum Brain Mapp. 2019 02 01; 40(2):407-419.
Sala-Llonch R, Smith SM, Woolrich M, Duff EP. PMID: 30259597; PMCID: PMC6492132.
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PubMed Mentions:
19 Fields:
Translation:
Humans
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Extending the Human Connectome Project across ages: Imaging protocols for the Lifespan Development and Aging projects. Neuroimage. 2018 12; 183:972-984.
Harms MP, Somerville LH, Ances BM, Andersson J, Barch DM, Bastiani M, Bookheimer SY, Brown TB, Buckner RL, Burgess GC, Coalson TS, Chappell MA, Dapretto M, Douaud G, Fischl B, Glasser MF, Greve DN, Hodge C, Jamison KW, Jbabdi S, Kandala S, Li X, Mair RW, Mangia S, Marcus D, Mascali D, Moeller S, Nichols TE, Robinson EC, Salat DH, Smith SM, Sotiropoulos SN, Terpstra M, Thomas KM, Tisdall MD, Ugurbil K, van der Kouwe A, Woods RP, Zöllei L, Van Essen DC, Yacoub E. PMID: 30261308; PMCID: PMC6484842.
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PubMed Mentions:
180 Fields:
Translation:
Humans
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The Lifespan Human Connectome Project in Development: A large-scale study of brain connectivity development in 5-21 year olds. Neuroimage. 2018 12; 183:456-468.
Somerville LH, Bookheimer SY, Buckner RL, Burgess GC, Curtiss SW, Dapretto M, Elam JS, Gaffrey MS, Harms MP, Hodge C, Kandala S, Kastman EK, Nichols TE, Schlaggar BL, Smith SM, Thomas KM, Yacoub E, Van Essen DC, Barch DM. PMID: 30142446; PMCID: PMC6416053.
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PubMed Mentions:
108 Fields:
Translation:
Humans
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Using temporal ICA to selectively remove global noise while preserving global signal in functional MRI data. Neuroimage. 2018 11 01; 181:692-717.
Glasser MF, Coalson TS, Bijsterbosch JD, Harrison SJ, Harms MP, Anticevic A, Van Essen DC, Smith SM. PMID: 29753843; PMCID: PMC6237431.
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PubMed Mentions:
115 Fields:
Translation:
Humans
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Construction of a neonatal cortical surface atlas using Multimodal Surface Matching in the Developing Human Connectome Project. Neuroimage. 2018 10 01; 179:11-29.
Bozek J, Makropoulos A, Schuh A, Fitzgibbon S, Wright R, Glasser MF, Coalson TS, O'Muircheartaigh J, Hutter J, Price AN, Cordero-Grande L, Teixeira RPAG, Hughes E, Tusor N, Baruteau KP, Rutherford MA, Edwards AD, Hajnal JV, Smith SM, Rueckert D, Jenkinson M, Robinson EC. PMID: 29890325; PMCID: PMC6783315.
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PubMed Mentions:
39 Fields:
Translation:
Humans
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Automated processing pipeline for neonatal diffusion MRI in the developing Human Connectome Project. Neuroimage. 2019 01 15; 185:750-763.
Bastiani M, Andersson JLR, Cordero-Grande L, Murgasova M, Hutter J, Price AN, Makropoulos A, Fitzgibbon SP, Hughes E, Rueckert D, Victor S, Rutherford M, Edwards AD, Smith SM, Tournier JD, Hajnal JV, Jbabdi S, Sotiropoulos SN. PMID: 29852283; PMCID: PMC6299258.
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PubMed Mentions:
63 Fields:
Translation:
Humans
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Multi-subject hierarchical inverse covariance modelling improves estimation of functional brain networks. Neuroimage. 2018 09; 178:370-384.
Colclough GL, Woolrich MW, Harrison SJ, Rojas López PA, Valdes-Sosa PA, Smith SM. PMID: 29746906; PMCID: PMC6565932.
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PubMed Mentions:
8 Fields:
Translation:
HumansAnimals
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Directed functional connectivity using dynamic graphical models. Neuroimage. 2018 07 15; 175:340-353.
Schwab S, Harbord R, Zerbi V, Elliott L, Afyouni S, Smith JQ, Woolrich MW, Smith SM, Nichols TE. PMID: 29625233; PMCID: PMC6153304.
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PubMed Mentions:
10 Fields:
Translation:
HumansAnimals
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Disambiguating brain functional connectivity. Neuroimage. 2018 06; 173:540-550.
Duff EP, Makin T, Cottaar M, Smith SM, Woolrich MW. PMID: 29476911; PMCID: PMC5929905.
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PubMed Mentions:
42 Fields:
Translation:
Humans
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The relationship between spatial configuration and functional connectivity of brain regions. Elife. 2018 02 16; 7.
Bijsterbosch JD, Woolrich MW, Glasser MF, Robinson EC, Beckmann CF, Van Essen DC, Harrison SJ, Smith SM. PMID: 29451491; PMCID: PMC5860869.
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PubMed Mentions:
92 Fields:
Translation:
Humans
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The developing human connectome project: A minimal processing pipeline for neonatal cortical surface reconstruction. Neuroimage. 2018 06; 173:88-112.
Makropoulos A, Robinson EC, Schuh A, Wright R, Fitzgibbon S, Bozek J, Counsell SJ, Steinweg J, Vecchiato K, Passerat-Palmbach J, Lenz G, Mortari F, Tenev T, Duff EP, Bastiani M, Cordero-Grande L, Hughes E, Tusor N, Tournier JD, Hutter J, Price AN, Teixeira RPAG, Murgasova M, Victor S, Kelly C, Rutherford MA, Smith SM, Edwards AD, Hajnal JV, Jenkinson M, Rueckert D. PMID: 29409960; PMCID: PMC6783314.
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PubMed Mentions:
160 Fields:
Translation:
Humans
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Multimodal surface matching with higher-order smoothness constraints. Neuroimage. 2018 02 15; 167:453-465.
Robinson EC, Garcia K, Glasser MF, Chen Z, Coalson TS, Makropoulos A, Bozek J, Wright R, Schuh A, Webster M, Hutter J, Price A, Cordero Grande L, Hughes E, Tusor N, Bayly PV, Van Essen DC, Smith SM, Edwards AD, Hajnal J, Jenkinson M, Glocker B, Rueckert D. PMID: 29100940; PMCID: PMC5991912.
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PubMed Mentions:
112 Fields:
Translation:
Humans
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Brain network dynamics are hierarchically organized in time. Proc Natl Acad Sci U S A. 2017 11 28; 114(48):12827-12832.
Vidaurre D, Smith SM, Woolrich MW. PMID: 29087305; PMCID: PMC5715736.
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PubMed Mentions:
258 Fields:
Translation:
Humans
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Image processing and Quality Control for the first 10,000 brain imaging datasets from UK Biobank. Neuroimage. 2018 02 01; 166:400-424.
Alfaro-Almagro F, Jenkinson M, Bangerter NK, Andersson JLR, Griffanti L, Douaud G, Sotiropoulos SN, Jbabdi S, Hernandez-Fernandez M, Vallee E, Vidaurre D, Webster M, McCarthy P, Rorden C, Daducci A, Alexander DC, Zhang H, Dragonu I, Matthews PM, Miller KL, Smith SM. PMID: 29079522; PMCID: PMC5770339.
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PubMed Mentions:
500 Fields:
Translation:
Humans
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The heritability of multi-modal connectivity in human brain activity. Elife. 2017 07 26; 6.
Colclough GL, Smith SM, Nichols TE, Winkler AM, Sotiropoulos SN, Glasser MF, Van Essen DC, Woolrich MW. PMID: 28745584; PMCID: PMC5621837.
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PubMed Mentions:
58 Fields:
Translation:
Humans
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Discovering dynamic brain networks from big data in rest and task. Neuroimage. 2018 10 15; 180(Pt B):646-656.
Vidaurre D, Abeysuriya R, Becker R, Quinn AJ, Alfaro-Almagro F, Smith SM, Woolrich MW. PMID: 28669905; PMCID: PMC6138951.
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PubMed Mentions:
121 Fields:
Translation:
Humans
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Studying neuroanatomy using MRI. Nat Neurosci. 2017 Feb 23; 20(3):314-326.
Lerch JP, van der Kouwe AJ, Raznahan A, Paus T, Johansen-Berg H, Miller KL, Smith SM, Fischl B, Sotiropoulos SN. PMID: 28230838.
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PubMed Mentions:
113 Fields:
Translation:
Humans
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Heterogeneous fractionation profiles of meta-analytic coactivation networks. Neuroimage. 2017 04 01; 149:424-435.
Laird AR, Riedel MC, Okoe M, Jianu R, Ray KL, Eickhoff SB, Smith SM, Fox PT, Sutherland MT. PMID: 28222386; PMCID: PMC5408583.
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PubMed Mentions:
3 Fields:
Translation:
Humans
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Hand classification of fMRI ICA noise components. Neuroimage. 2017 07 01; 154:188-205.
Griffanti L, Douaud G, Bijsterbosch J, Evangelisti S, Alfaro-Almagro F, Glasser MF, Duff EP, Fitzgibbon S, Westphal R, Carone D, Beckmann CF, Smith SM. PMID: 27989777; PMCID: PMC5489418.
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PubMed Mentions:
208 Fields:
Translation:
Humans
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Tradeoffs in pushing the spatial resolution of fMRI for the 7T Human Connectome Project. Neuroimage. 2017 07 01; 154:23-32.
T Vu A, Jamison K, Glasser MF, Smith SM, Coalson T, Moeller S, Auerbach EJ, Ugurbil K, Yacoub E. PMID: 27894889; PMCID: PMC5445004.
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PubMed Mentions:
56 Fields:
Translation:
Humans
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Multimodal population brain imaging in the UK Biobank prospective epidemiological study. Nat Neurosci. 2016 11; 19(11):1523-1536.
Miller KL, Alfaro-Almagro F, Bangerter NK, Thomas DL, Yacoub E, Xu J, Bartsch AJ, Jbabdi S, Sotiropoulos SN, Andersson JL, Griffanti L, Douaud G, Okell TW, Weale P, Dragonu I, Garratt S, Hudson S, Collins R, Jenkinson M, Matthews PM, Smith SM. PMID: 27643430; PMCID: PMC5086094.
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PubMed Mentions:
688 Fields:
Translation:
Humans
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The Human Connectome Project's neuroimaging approach. Nat Neurosci. 2016 08 26; 19(9):1175-87.
Glasser MF, Smith SM, Marcus DS, Andersson JL, Auerbach EJ, Behrens TE, Coalson TS, Harms MP, Jenkinson M, Moeller S, Robinson EC, Sotiropoulos SN, Xu J, Yacoub E, Ugurbil K, Van Essen DC. PMID: 27571196; PMCID: PMC6172654.
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PubMed Mentions:
405 Fields:
Translation:
Humans
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A multi-modal parcellation of human cerebral cortex. Nature. 2016 08 11; 536(7615):171-178.
Glasser MF, Coalson TS, Robinson EC, Hacker CD, Harwell J, Yacoub E, Ugurbil K, Andersson J, Beckmann CF, Jenkinson M, Smith SM, Van Essen DC. PMID: 27437579; PMCID: PMC4990127.
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PubMed Mentions:
1755 Fields:
Translation:
Humans
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Faster permutation inference in brain imaging. Neuroimage. 2016 Nov 01; 141:502-516.
Winkler AM, Ridgway GR, Douaud G, Nichols TE, Smith SM. PMID: 27288322; PMCID: PMC5035139.
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PubMed Mentions:
116 Fields:
Translation:
Humans
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The brain functional connectome is robustly altered by lack of sleep. Neuroimage. 2016 Feb 15; 127:324-332.
Kaufmann T, Elvsåshagen T, Alnæs D, Zak N, Pedersen PØ, Norbom LB, Quraishi SH, Tagliazucchi E, Laufs H, Bjørnerud A, Malt UF, Andreassen OA, Roussos E, Duff EP, Smith SM, Groote IR, Westlye LT. PMID: 26712339; PMCID: PMC6600874.
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PubMed Mentions:
48 Fields:
Translation:
Humans
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A positive-negative mode of population covariation links brain connectivity, demographics and behavior. Nat Neurosci. 2015 Nov; 18(11):1565-7.
Smith SM, Nichols TE, Vidaurre D, Winkler AM, Behrens TE, Glasser MF, Ugurbil K, Barch DM, Van Essen DC, Miller KL. PMID: 26414616; PMCID: PMC4625579.
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PubMed Mentions:
351 Fields:
Translation:
Humans
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Multi-level block permutation. Neuroimage. 2015 Dec; 123:253-68.
Winkler AM, Webster MA, Vidaurre D, Nichols TE, Smith SM. PMID: 26074200; PMCID: PMC4644991.
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PubMed Mentions:
119 Fields:
Translation:
Humans
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Large-scale probabilistic functional modes from resting state fMRI. Neuroimage. 2015 Apr 01; 109:217-31.
Harrison SJ, Woolrich MW, Robinson EC, Glasser MF, Beckmann CF, Jenkinson M, Smith SM. PMID: 25598050; PMCID: PMC4349633.
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PubMed Mentions:
51 Fields:
Translation:
Humans
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Attentional load modulates large-scale functional brain connectivity beyond the core attention networks. Neuroimage. 2015 Apr 01; 109:260-72.
Alnæs D, Kaufmann T, Richard G, Duff EP, Sneve MH, Endestad T, Nordvik JE, Andreassen OA, Smith SM, Westlye LT. PMID: 25595500.
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PubMed Mentions:
21 Fields:
Translation:
Humans
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A common brain network links development, aging, and vulnerability to disease. Proc Natl Acad Sci U S A. 2014 Dec 09; 111(49):17648-53.
Douaud G, Groves AR, Tamnes CK, Westlye LT, Duff EP, Engvig A, Walhovd KB, James A, Gass A, Monsch AU, Matthews PM, Fjell AM, Smith SM, Johansen-Berg H. PMID: 25422429; PMCID: PMC4267352.
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PubMed Mentions:
136 Fields:
Translation:
Humans
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Group-PCA for very large fMRI datasets. Neuroimage. 2014 Nov 01; 101:738-49.
Smith SM, Hyvärinen A, Varoquaux G, Miller KL, Beckmann CF. PMID: 25094018; PMCID: PMC4289914.
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PubMed Mentions:
103 Fields:
Translation:
Humans
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MSM: a new flexible framework for Multimodal Surface Matching. Neuroimage. 2014 Oct 15; 100:414-26.
Robinson EC, Jbabdi S, Glasser MF, Andersson J, Burgess GC, Harms MP, Smith SM, Van Essen DC, Jenkinson M. PMID: 24939340; PMCID: PMC4190319.
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PubMed Mentions:
275 Fields:
Translation:
Humans
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Study protocol: The Whitehall II imaging sub-study. BMC Psychiatry. 2014 May 30; 14:159.
Filippini N, Zsoldos E, Haapakoski R, Sexton CE, Mahmood A, Allan CL, Topiwala A, Valkanova V, Brunner EJ, Shipley MJ, Auerbach E, Moeller S, Ugurbil K, Xu J, Yacoub E, Andersson J, Bijsterbosch J, Clare S, Griffanti L, Hess AT, Jenkinson M, Miller KL, Salimi-Khorshidi G, Sotiropoulos SN, Voets NL, Smith SM, Geddes JR, Singh-Manoux A, Mackay CE, Kivimäki M, Ebmeier KP. PMID: 24885374; PMCID: PMC4048583.
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PubMed Mentions:
48 Fields:
Translation:
Humans
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Fast transient networks in spontaneous human brain activity. Elife. 2014 Mar 25; 3:e01867.
Baker AP, Brookes MJ, Rezek IA, Smith SM, Behrens T, Probert Smith PJ, Woolrich M. PMID: 24668169; PMCID: PMC3965210.
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PubMed Mentions:
221 Fields:
Translation:
Humans
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Local GABA concentration is related to network-level resting functional connectivity. Elife. 2014 Mar 25; 3:e01465.
Stagg CJ, Bachtiar V, Amadi U, Gudberg CA, Ilie AS, Sampaio-Baptista C, O'Shea J, Woolrich M, Smith SM, Filippini N, Near J, Johansen-Berg H. PMID: 24668166; PMCID: PMC3964822.
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PubMed Mentions:
96 Fields:
Translation:
HumansCells
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ICA-based artefact removal and accelerated fMRI acquisition for improved resting state network imaging. Neuroimage. 2014 Jul 15; 95:232-47.
Griffanti L, Salimi-Khorshidi G, Beckmann CF, Auerbach EJ, Douaud G, Sexton CE, Zsoldos E, Ebmeier KP, Filippini N, Mackay CE, Moeller S, Xu J, Yacoub E, Baselli G, Ugurbil K, Miller KL, Smith SM. PMID: 24657355; PMCID: PMC4154346.
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PubMed Mentions:
579 Fields:
Translation:
Humans
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Permutation inference for the general linear model. Neuroimage. 2014 May 15; 92:381-97.
Winkler AM, Ridgway GR, Webster MA, Smith SM, Nichols TE. PMID: 24530839; PMCID: PMC4010955.
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PubMed Mentions:
1602 Fields:
Translation:
HumansAnimals
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Automatic denoising of functional MRI data: combining independent component analysis and hierarchical fusion of classifiers. Neuroimage. 2014 Apr 15; 90:449-68.
Salimi-Khorshidi G, Douaud G, Beckmann CF, Glasser MF, Griffanti L, Smith SM. PMID: 24389422; PMCID: PMC4019210.
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PubMed Mentions:
778 Fields:
Translation:
Humans
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Functional connectomics from resting-state fMRI. Trends Cogn Sci. 2013 Dec; 17(12):666-82.
Smith SM, Vidaurre D, Beckmann CF, Glasser MF, Jenkinson M, Miller KL, Nichols TE, Robinson EC, Salimi-Khorshidi G, Woolrich MW, Barch DM, Ugurbil K, Van Essen DC. PMID: 24238796; PMCID: PMC4004765.
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PubMed Mentions:
419 Fields:
Translation:
HumansAnimals
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Evaluation of slice accelerations using multiband echo planar imaging at 3 T. Neuroimage. 2013 Dec; 83:991-1001.
Xu J, Moeller S, Auerbach EJ, Strupp J, Smith SM, Feinberg DA, Yacoub E, Ugurbil K. PMID: 23899722; PMCID: PMC3815955.
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PubMed Mentions:
241 Fields:
Translation:
Humans
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Pushing spatial and temporal resolution for functional and diffusion MRI in the Human Connectome Project. Neuroimage. 2013 Oct 15; 80:80-104.
Ugurbil K, Xu J, Auerbach EJ, Moeller S, Vu AT, Duarte-Carvajalino JM, Lenglet C, Wu X, Schmitter S, Van de Moortele PF, Strupp J, Sapiro G, De Martino F, Wang D, Harel N, Garwood M, Chen L, Feinberg DA, Smith SM, Miller KL, Sotiropoulos SN, Jbabdi S, Andersson JL, Behrens TE, Glasser MF, Van Essen DC, Yacoub E, WU-Minn HCP Consortium. PMID: 23702417; PMCID: PMC3740184.
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PubMed Mentions:
413 Fields:
Translation:
HumansAnimals
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Resting-state fMRI in the Human Connectome Project. Neuroimage. 2013 Oct 15; 80:144-68.
Smith SM, Beckmann CF, Andersson J, Auerbach EJ, Bijsterbosch J, Douaud G, Duff E, Feinberg DA, Griffanti L, Harms MP, Kelly M, Laumann T, Miller KL, Moeller S, Petersen S, Power J, Salimi-Khorshidi G, Snyder AZ, Vu AT, Woolrich MW, Xu J, Yacoub E, Ugurbil K, Van Essen DC, Glasser MF, WU-Minn HCP Consortium. PMID: 23702415; PMCID: PMC3720828.
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PubMed Mentions:
682 Fields:
Translation:
Humans
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The WU-Minn Human Connectome Project: an overview. Neuroimage. 2013 Oct 15; 80:62-79.
Van Essen DC, Smith SM, Barch DM, Behrens TE, Yacoub E, Ugurbil K, WU-Minn HCP Consortium. PMID: 23684880; PMCID: PMC3724347.
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PubMed Mentions:
1986 Fields:
Translation:
Humans
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Improving alignment in Tract-based spatial statistics: evaluation and optimization of image registration. Neuroimage. 2013 Aug 01; 76:400-11.
de Groot M, Vernooij MW, Klein S, Ikram MA, Vos FM, Smith SM, Niessen WJ, Andersson JL. PMID: 23523807; PMCID: PMC6588540.
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PubMed Mentions:
82 Fields:
Translation:
Humans
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Spatially constrained hierarchical parcellation of the brain with resting-state fMRI. Neuroimage. 2013 Aug 01; 76:313-24.
Blumensath T, Jbabdi S, Glasser MF, Van Essen DC, Ugurbil K, Behrens TE, Smith SM. PMID: 23523803; PMCID: PMC3758955.
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PubMed Mentions:
104 Fields:
Translation:
Humans
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Benefits of multi-modal fusion analysis on a large-scale dataset: life-span patterns of inter-subject variability in cortical morphometry and white matter microstructure. Neuroimage. 2012 Oct 15; 63(1):365-80.
Groves AR, Smith SM, Fjell AM, Tamnes CK, Walhovd KB, Douaud G, Woolrich MW, Westlye LT. PMID: 22750721.
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PubMed Mentions:
68 Fields:
Translation:
HumansCells
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Temporally-independent functional modes of spontaneous brain activity. Proc Natl Acad Sci U S A. 2012 Feb 21; 109(8):3131-6.
Smith SM, Miller KL, Moeller S, Xu J, Auerbach EJ, Woolrich MW, Beckmann CF, Jenkinson M, Andersson J, Glasser MF, Van Essen DC, Feinberg DA, Yacoub ES, Ugurbil K. PMID: 22323591; PMCID: PMC3286957.
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PubMed Mentions:
384 Fields:
Translation:
Humans
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The future of FMRI connectivity. Neuroimage. 2012 Aug 15; 62(2):1257-66.
Smith SM. PMID: 22248579.
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PubMed Mentions:
156 Fields:
Translation:
HumansAnimals
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Task-driven ICA feature generation for accurate and interpretable prediction using fMRI. Neuroimage. 2012 Mar; 60(1):189-203.
Duff EP, Trachtenberg AJ, Mackay CE, Howard MA, Wilson F, Smith SM, Woolrich MW. PMID: 22227050.
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PubMed Mentions:
11 Fields:
Translation:
Humans
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FSL. Neuroimage. 2012 Aug 15; 62(2):782-90.
Jenkinson M, Beckmann CF, Behrens TE, Woolrich MW, Smith SM. PMID: 21979382.
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PubMed Mentions:
4759 Fields:
Translation:
Humans
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Diffusion imaging of whole, post-mortem human brains on a clinical MRI scanner. Neuroimage. 2011 Jul 01; 57(1):167-181.
Miller KL, Stagg CJ, Douaud G, Jbabdi S, Smith SM, Behrens TEJ, Jenkinson M, Chance SA, Esiri MM, Voets NL, Jenkinson N, Aziz TZ, Turner MR, Johansen-Berg H, McNab JA. PMID: 21473920; PMCID: PMC3115068.
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PubMed Mentions:
133 Fields:
Translation:
Humans
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A Bayesian model of shape and appearance for subcortical brain segmentation. Neuroimage. 2011 Jun 01; 56(3):907-22.
Patenaude B, Smith SM, Kennedy DN, Jenkinson M. PMID: 21352927; PMCID: PMC3417233.
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PubMed Mentions:
1034 Fields:
Translation:
Humans
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Spectral characteristics of resting state networks. Prog Brain Res. 2011; 193:259-76.
Niazy RK, Xie J, Miller K, Beckmann CF, Smith SM. PMID: 21854968.
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PubMed Mentions:
100 Fields:
Translation:
Humans
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Multiplexed echo planar imaging for sub-second whole brain FMRI and fast diffusion imaging. PLoS One. 2010 Dec 20; 5(12):e15710.
Feinberg DA, Moeller S, Smith SM, Auerbach E, Ramanna S, Gunther M, Glasser MF, Miller KL, Ugurbil K, Yacoub E. PMID: 21187930; PMCID: PMC3004955.
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PubMed Mentions:
641 Fields:
Translation:
HumansCells
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Adjusting the effect of nonstationarity in cluster-based and TFCE inference. Neuroimage. 2011 Feb 01; 54(3):2006-19.
Salimi-Khorshidi G, Smith SM, Nichols TE. PMID: 20955803.
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PubMed Mentions:
76 Fields:
Translation:
Humans
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Network modelling methods for FMRI. Neuroimage. 2011 Jan 15; 54(2):875-91.
Smith SM, Miller KL, Salimi-Khorshidi G, Webster M, Beckmann CF, Nichols TE, Ramsey JD, Woolrich MW. PMID: 20817103.
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PubMed Mentions:
793 Fields:
Translation:
Humans
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Crossing fibres in tract-based spatial statistics. Neuroimage. 2010 Jan 01; 49(1):249-56.
Jbabdi S, Behrens TE, Smith SM. PMID: 19712743.
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PubMed Mentions:
97 Fields:
Translation:
HumansCells
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White matter tract integrity in aging and Alzheimer's disease. Hum Brain Mapp. 2009 Apr; 30(4):1051-9.
Damoiseaux JS, Smith SM, Witter MP, Sanz-Arigita EJ, Barkhof F, Scheltens P, Stam CJ, Zarei M, Rombouts SA. PMID: 18412132; PMCID: PMC6870688.
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PubMed Mentions:
110 Fields:
Translation:
Humans
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Model-free group analysis shows altered BOLD FMRI networks in dementia. Hum Brain Mapp. 2009 Jan; 30(1):256-66.
Rombouts SA, Damoiseaux JS, Goekoop R, Barkhof F, Scheltens P, Smith SM, Beckmann CF. PMID: 18041738; PMCID: PMC6870626.
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PubMed Mentions:
60 Fields:
Translation:
Humans
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Meta-analysis of neuroimaging data: a comparison of image-based and coordinate-based pooling of studies. Neuroimage. 2009 Apr 15; 45(3):810-23.
Salimi-Khorshidi G, Smith SM, Keltner JR, Wager TD, Nichols TE. PMID: 19166944.
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PubMed Mentions:
160 Fields:
Translation:
Humans
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Bayesian analysis of neuroimaging data in FSL. Neuroimage. 2009 Mar; 45(1 Suppl):S173-86.
Woolrich MW, Jbabdi S, Patenaude B, Chappell M, Makni S, Behrens T, Beckmann C, Jenkinson M, Smith SM. PMID: 19059349.
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PubMed Mentions:
1116 Fields:
Translation:
Humans
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Threshold-free cluster enhancement: addressing problems of smoothing, threshold dependence and localisation in cluster inference. Neuroimage. 2009 Jan 01; 44(1):83-98.
Smith SM, Nichols TE. PMID: 18501637.
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PubMed Mentions:
2435 Fields:
Translation:
Humans
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Enhanced brain extraction improves the accuracy of brain atrophy estimation. Neuroimage. 2008 Apr 01; 40(2):583-589.
Battaglini M, Smith SM, Brogi S, De Stefano N. PMID: 18255315.
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PubMed Mentions:
26 Fields:
Translation:
Humans
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Regional brain atrophy development is related to specific aspects of clinical dysfunction in multiple sclerosis. Neuroimage. 2007 Nov 15; 38(3):529-37.
Jasperse B, Vrenken H, Sanz-Arigita E, de Groot V, Smith SM, Polman CH, Barkhof F. PMID: 17889567.
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PubMed Mentions:
16 Fields:
Translation:
Humans
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Signal and noise characteristics of SSFP FMRI: a comparison with GRE at multiple field strengths. Neuroimage. 2007 Oct 01; 37(4):1227-36.
Miller KL, Smith SM, Jezzard P, Wiggins GC, Wiggins CJ. PMID: 17706432.
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PubMed Mentions:
18 Fields:
Translation:
Humans
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Longitudinal and cross-sectional analysis of atrophy in Alzheimer's disease: cross-validation of BSI, SIENA and SIENAX. Neuroimage. 2007 Jul 15; 36(4):1200-6.
Smith SM, Rao A, De Stefano N, Jenkinson M, Schott JM, Matthews PM, Fox NC. PMID: 17537648.
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PubMed Mentions:
48 Fields:
Translation:
Humans
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Integrity of white matter in the corpus callosum correlates with bimanual co-ordination skills. Neuroimage. 2007; 36 Suppl 2:T16-21.
Johansen-Berg H, Della-Maggiore V, Behrens TE, Smith SM, Paus T. PMID: 17499163; PMCID: PMC3119816.
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PubMed Mentions:
104 Fields:
Translation:
Humans
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Tract-based spatial statistics: voxelwise analysis of multi-subject diffusion data. Neuroimage. 2006 Jul 15; 31(4):1487-505.
Smith SM, Jenkinson M, Johansen-Berg H, Rueckert D, Nichols TE, Mackay CE, Watkins KE, Ciccarelli O, Cader MZ, Matthews PM, Behrens TE. PMID: 16624579.
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PubMed Mentions:
3111 Fields:
Translation:
Humans
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Constrained linear basis sets for HRF modelling using Variational Bayes. Neuroimage. 2004 Apr; 21(4):1748-61.
Woolrich MW, Behrens TE, Smith SM. PMID: 15050595.
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PubMed Mentions:
105 Fields:
Translation:
Humans
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Multilevel linear modelling for FMRI group analysis using Bayesian inference. Neuroimage. 2004 Apr; 21(4):1732-47.
Woolrich MW, Behrens TE, Beckmann CF, Jenkinson M, Smith SM. PMID: 15050594.
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PubMed Mentions:
775 Fields:
Translation:
Humans
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Advances in functional and structural MR image analysis and implementation as FSL. Neuroimage. 2004; 23 Suppl 1:S208-19.
Smith SM, Jenkinson M, Woolrich MW, Beckmann CF, Behrens TE, Johansen-Berg H, Bannister PR, De Luca M, Drobnjak I, Flitney DE, Niazy RK, Saunders J, Vickers J, Zhang Y, De Stefano N, Brady JM, Matthews PM. PMID: 15501092.
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PubMed Mentions:
6168 Fields:
Translation:
Humans
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General multilevel linear modeling for group analysis in FMRI. Neuroimage. 2003 Oct; 20(2):1052-63.
Beckmann CF, Jenkinson M, Smith SM. PMID: 14568475.
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PubMed Mentions:
712 Fields:
Translation:
Humans
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On bias in the estimation of autocorrelations for fMRI voxel time-series analysis. Neuroimage. 2003 Jan; 18(1):83-90.
Marchini JL, Smith SM. PMID: 12507446.
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PubMed Mentions:
11 Fields:
Translation:
Humans
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Accurate, robust, and automated longitudinal and cross-sectional brain change analysis. Neuroimage. 2002 Sep; 17(1):479-89.
Smith SM, Zhang Y, Jenkinson M, Chen J, Matthews PM, Federico A, De Stefano N. PMID: 12482100.
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PubMed Mentions:
845 Fields:
Translation:
Humans