Dean Buonomano

Title(s)Professor, Neurobiology
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    CRCNS: Multiple clocks for the encoding of time in corticostriatal circuits
    NIH R01NS125877Sep 23, 2021 - Aug 31, 2026
    Role: Co-Principal Investigator
    Multiplexing working memory and timing: Encoding retrospective and prospective information in transient neural trajectories.
    NIH R01NS116589Apr 15, 2020 - Mar 31, 2023
    Role: Principal Investigator
    CRCNS: Network mechanisms of the learning and encoding of timed motor responses
    NIH R01NS100050Jul 1, 2016 - Jun 30, 2021
    Role: Principal Investigator
    Abnormal network dynamics and learning in neural circuits from Fmr1-/- mice
    NIH R21MH097093Sep 19, 2012 - Aug 31, 2015
    Role: Principal Investigator
    Learning temporal patterns: computational and experimental studies of timing
    NIH R03NS077340Jul 1, 2012 - Jun 30, 2014
    Role: Principal Investigator
    Computations and Unsupervised Learning in Recurrent Neural Networks
    NIH R03MH076888Jul 3, 2007 - Jun 30, 2010
    Role: Principal Investigator
    NIH R01MH060163Sep 22, 2001 - Aug 31, 2020
    Role: Principal Investigator
    NIH F32MH010431Jun 23, 1993
    Role: Principal Investigator
    NIH F31MH009895Mar 12, 1990
    Role: Principal Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Differential Excitability of PV and SST Neurons Results in Distinct Functional Roles in Inhibition Stabilization of Up States. J Neurosci. 2021 Aug 25; 41(34):7182-7196. Romero-Sosa JL, Motanis H, Buonomano DV. PMID: 34253625.
      View in: PubMed   Mentions:    Fields:    
    2. The orbitofrontal cortex in temporal cognition. Behav Neurosci. 2021 Apr; 135(2):154-164. Sosa JLR, Buonomano D, Izquierdo A. PMID: 34060872.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    3. Differential Short-Term Plasticity of PV and SST Neurons Accounts for Adaptation and Facilitation of Cortical Neurons to Auditory Tones. J Neurosci. 2020 11 25; 40(48):9224-9235. Seay MJ, Natan RG, Geffen MN, Buonomano DV. PMID: 33097639.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    4. Neural Sequences as an Optimal Dynamical Regime for the Readout of Time. Neuron. 2020 11 25; 108(4):651-658.e5. Zhou S, Masmanidis SC, Buonomano DV. PMID: 32946745.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    5. A model of temporal scaling correctly predicts that motor timing improves with speed. Nat Commun. 2018 11 09; 9(1):4732. Hardy NF, Goudar V, Romero-Sosa JL, Buonomano DV. PMID: 30413692.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    6. Short-Term Synaptic Plasticity as a Mechanism for Sensory Timing. Trends Neurosci. 2018 10; 41(10):701-711. Motanis H, Seay MJ, Buonomano DV. PMID: 30274605.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    7. The Neural Basis of Timing: Distributed Mechanisms for Diverse Functions. Neuron. 2018 05 16; 98(4):687-705. Paton JJ, Buonomano DV. PMID: 29772201.
      View in: PubMed   Mentions: 50     Fields:    Translation:HumansAnimalsCells
    8. Encoding sensory and motor patterns as time-invariant trajectories in recurrent neural networks. Elife. 2018 03 14; 7. Goudar V, Buonomano DV. PMID: 29537963.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansCells
    9. Encoding Time in Feedforward Trajectories of a Recurrent Neural Network Model. Neural Comput. 2018 02; 30(2):378-396. Hardy NF, Buonomano DV. PMID: 29162002.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    10. Differential Encoding of Time by Prefrontal and Striatal Network Dynamics. J Neurosci. 2017 01 25; 37(4):854-870. Bakhurin KI, Goudar V, Shobe JL, Claar LD, Buonomano DV, Masmanidis SC. PMID: 28123021.
      View in: PubMed   Mentions: 36     Fields:    Translation:Animals
    11. Temporal Interval Learning in Cortical Cultures Is Encoded in Intrinsic Network Dynamics. Neuron. 2016 07 20; 91(2):320-7. Goel A, Buonomano DV. PMID: 27346530.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    12. Neurocomputational Models of Interval and Pattern Timing. Curr Opin Behav Sci. 2016 Apr; 8:250-257. Hardy NF, Buonomano DV. PMID: 27790629.
      View in: PubMed   Mentions: 10  
    13. Time in Cortical Circuits. J Neurosci. 2015 Oct 14; 35(41):13912-6. Finnerty GT, Shadlen MN, Jazayeri M, Nobre AC, Buonomano DV. PMID: 26468192.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansAnimals
    14. Delayed in vitro development of Up states but normal network plasticity in Fragile X circuits. Eur J Neurosci. 2015 Sep; 42(6):2312-21. Motanis H, Buonomano D. PMID: 26138886.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    15. Multifocal fluorescence microscope for fast optical recordings of neuronal action potentials. Biophys J. 2015 Feb 03; 108(3):520-9. Shtrahman M, Aharoni DB, Hardy NF, Buonomano DV, Arisaka K, Otis TS. PMID: 25650920.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    16. A model of order-selectivity based on dynamic changes in the balance of excitation and inhibition produced by short-term synaptic plasticity. J Neurophysiol. 2015 Jan 15; 113(2):509-23. Goudar V, Buonomano DV. PMID: 25339707.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    17. Useful dynamic regimes emerge in recurrent networks. Nat Neurosci. 2014 Apr; 17(4):487-9. Goudar V, Buonomano DV. PMID: 24671063.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    18. Timing as an intrinsic property of neural networks: evidence from in vivo and in vitro experiments. Philos Trans R Soc Lond B Biol Sci. 2014 Mar 05; 369(1637):20120460. Goel A, Buonomano DV. PMID: 24446494.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansCells
    19. Neural dynamics based timing in the subsecond to seconds range. Adv Exp Med Biol. 2014; 829:101-17. Buonomano DV. PMID: 25358707.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimals
    20. Robust timing and motor patterns by taming chaos in recurrent neural networks. Nat Neurosci. 2013 Jul; 16(7):925-33. Laje R, Buonomano DV. PMID: 23708144.
      View in: PubMed   Mentions: 115     Fields:    Translation:HumansAnimalsCells
    21. Chronic electrical stimulation homeostatically decreases spontaneous activity, but paradoxically increases evoked network activity. J Neurophysiol. 2013 Apr; 109(7):1824-36. Goel A, Buonomano DV. PMID: 23324317.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    22. Unsupervised formation of vocalization-sensitive neurons: a cortical model based on short-term and homeostatic plasticity. Neural Comput. 2012 Oct; 24(10):2579-603. Lee TP, Buonomano DV. PMID: 22845822.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansAnimalsCells
    23. Learning of temporal motor patterns: an analysis of continuous versus reset timing. Front Integr Neurosci. 2011; 5:61. Laje R, Cheng K, Buonomano DV. PMID: 22016724.
      View in: PubMed   Mentions: 9  
    24. A novel learning rule for long-term plasticity of short-term synaptic plasticity enhances temporal processing. Front Integr Neurosci. 2011; 5:20. Carvalho TP, Buonomano DV. PMID: 21660100.
      View in: PubMed   Mentions: 17  
    25. Population clocks: motor timing with neural dynamics. Trends Cogn Sci. 2010 Dec; 14(12):520-7. Buonomano DV, Laje R. PMID: 20889368.
      View in: PubMed   Mentions: 56     Fields:    Translation:Humans
    26. Neural dynamics of in vitro cortical networks reflects experienced temporal patterns. Nat Neurosci. 2010 Aug; 13(8):917-9. Johnson HA, Goel A, Buonomano DV. PMID: 20543842.
      View in: PubMed   Mentions: 33     Fields:    Translation:Animals
    27. Embedding multiple trajectories in simulated recurrent neural networks in a self-organizing manner. J Neurosci. 2009 Oct 21; 29(42):13172-81. Hanna RF, Ward TJ, Chow DS, Lagana SM, Moreira RK, Emond JC, Weintraub JL, Prince MR, Liu JK, Buonomano DV. PMID: 19846705.
      View in: PubMed   Mentions: 40     Fields:    Translation:HumansCells
    28. Harnessing chaos in recurrent neural networks. Neuron. 2009 Aug 27; 63(4):423-5. Buonomano DV. PMID: 19709625.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimals
    29. Influence of the interstimulus interval on temporal processing and learning: testing the state-dependent network model. Philos Trans R Soc Lond B Biol Sci. 2009 Jul 12; 364(1525):1865-73. Buonomano DV, Bramen J, Khodadadifar M. PMID: 19487189.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansAnimals
    30. Differential effects of excitatory and inhibitory plasticity on synaptically driven neuronal input-output functions. Neuron. 2009 Mar 12; 61(5):774-85. Carvalho TP, Buonomano DV. PMID: 19285473.
      View in: PubMed   Mentions: 46     Fields:    Translation:AnimalsCells
    31. State-dependent computations: spatiotemporal processing in cortical networks. Nat Rev Neurosci. 2009 Feb; 10(2):113-25. Buonomano DV, Maass W. PMID: 19145235.
      View in: PubMed   Mentions: 268     Fields:    Translation:HumansAnimals
    32. A method for chronic stimulation of cortical organotypic cultures using implanted electrodes. J Neurosci Methods. 2009 Jan 30; 176(2):136-43. Johnson HA, Buonomano DV. PMID: 18835297.
      View in: PubMed   Mentions: 8     Fields:    Translation:Animals
    33. The biology of time across different scales. Nat Chem Biol. 2007 Oct; 3(10):594-7. Buonomano DV. PMID: 17876310.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansAnimals
    34. Development and plasticity of spontaneous activity and Up states in cortical organotypic slices. J Neurosci. 2007 May 30; 27(22):5915-25. Johnson HA, Buonomano DV. PMID: 17537962.
      View in: PubMed   Mentions: 37     Fields:    Translation:AnimalsCells
    35. Timing in the absence of clocks: encoding time in neural network states. Neuron. 2007 Feb 01; 53(3):427-38. Karmarkar UR, Buonomano DV. PMID: 17270738.
      View in: PubMed   Mentions: 164     Fields:    Translation:Humans
    36. Different forms of homeostatic plasticity are engaged with distinct temporal profiles. Eur J Neurosci. 2006 Mar; 23(6):1575-84. Karmarkar UR, Buonomano DV. PMID: 16553621.
      View in: PubMed   Mentions: 48     Fields:    Translation:Animals
    37. Time and the brain: how subjective time relates to neural time. J Neurosci. 2005 Nov 09; 25(45):10369-71. Eagleman DM, Tse PU, Buonomano D, Janssen P, Nobre AC, Holcombe AO. PMID: 16280574.
      View in: PubMed   Mentions: 45     Fields:    Translation:HumansAnimals
    38. A learning rule for the emergence of stable dynamics and timing in recurrent networks. J Neurophysiol. 2005 Oct; 94(4):2275-83. Buonomano DV. PMID: 16160088.
      View in: PubMed   Mentions: 35     Fields:    Translation:AnimalsCells
    39. A technique for repeated recordings in cortical organotypic slices. J Neurosci Methods. 2005 Jul 15; 146(1):69-75. Dong HW, Buonomano DV. PMID: 15935222.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    40. Timing and balance of inhibition enhance the effect of long-term potentiation on cell firing. J Neurosci. 2004 Oct 06; 24(40):8873-84. Marder CP, Buonomano DV. PMID: 15470154.
      View in: PubMed   Mentions: 24     Fields:    Translation:AnimalsCells
    41. The neural basis of temporal processing. Annu Rev Neurosci. 2004; 27:307-40. Mauk MD, Buonomano DV. PMID: 15217335.
      View in: PubMed   Mentions: 285     Fields:    Translation:HumansAnimals
    42. Timing of neural responses in cortical organotypic slices. Proc Natl Acad Sci U S A. 2003 Apr 15; 100(8):4897-902. Buonomano DV. PMID: 12668762.
      View in: PubMed   Mentions: 37     Fields:    Translation:Animals
    43. Temporal specificity of perceptual learning in an auditory discrimination task. Learn Mem. 2003 Mar-Apr; 10(2):141-7. Karmarkar UR, Buonomano DV. PMID: 12663752.
      View in: PubMed   Mentions: 38     Fields:    Translation:Humans
    44. Differential effects of short- and long-term potentiation on cell firing in the CA1 region of the hippocampus. J Neurosci. 2003 Jan 01; 23(1):112-21. Marder CP, Buonomano DV. PMID: 12514207.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    45. Mechanisms and significance of spike-timing dependent plasticity. Biol Cybern. 2002 Dec; 87(5-6):373-82. Karmarkar UR, Najarian MT, Buonomano DV. PMID: 12461627.
      View in: PubMed   Mentions: 23     Fields:    Translation:AnimalsCells
    46. A model of spike-timing dependent plasticity: one or two coincidence detectors? J Neurophysiol. 2002 Jul; 88(1):507-13. Karmarkar UR, Buonomano DV. PMID: 12091572.
      View in: PubMed   Mentions: 46     Fields:    Translation:HumansAnimals
    47. How do we tell time? Neuroscientist. 2002 Feb; 8(1):42-51. Buonomano DV, Karmarkar UR. PMID: 11843098.
      View in: PubMed   Mentions: 57     Fields:    Translation:HumansAnimals
    48. Decoding temporal information: A model based on short-term synaptic plasticity. J Neurosci. 2000 Feb 01; 20(3):1129-41. Buonomano DV. PMID: 10648718.
      View in: PubMed   Mentions: 83     Fields:    Translation:Cells
    49. A neural network model of temporal code generation and position-invariant pattern recognition. Neural Comput. 1999 Jan 01; 11(1):103-16. Buonomano DV, Merzenich M. PMID: 9950725.
      View in: PubMed   Mentions: 7     Fields:    
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