Jesse Ray Zamudio

Title(s)Assistant Professor, Molecular, Cell and Developmental Biology
SchoolCollege of Letters and Science
ORCID ORCID Icon0000-0001-8714-1049 Additional info
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    Collapse Biography 
    Collapse Education and Training
    UCLA, Los AngelesB.S.06/2003Chemistry & Biochemistry
    UCLA, Los AngelesPh.D.12/2008Microbiology,Immunology & Molecular Genetics
    MIT, CambridgePostdoctoral Fellow1/2016Cancer Genomics

    Collapse Overview 

    Collapse Research 
    Collapse Research Activities and Funding
    Mechanisms of Genomic Stability by Mammalian Argonaute Proteins
    NIH R01GM143536Sep 1, 2021 - Jun 30, 2025
    Role: Principal Investigator
    In vivo characterization of microRNA regulation
    NIH F32CA139902Sep 29, 2009 - Sep 28, 2012
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Overexpression of Malat1 drives metastasis through inflammatory reprogramming of the tumor microenvironment. Sci Immunol. 2024 Jun 14; 9(96):eadh5462. Martinez-Terroba E, Plasek-Hegde LM, Chiotakakos I, Li V, de Miguel FJ, Robles-Oteiza C, Tyagi A, Politi K, Zamudio JR, Dimitrova N. PMID: 38875320.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    2. Mammalian RNAi represses pericentromeric lncRNAs to maintain genome stability. bioRxiv. 2024 May 24. Sandoval R, Dilsavor CN, Grishanina NR, Patel V, Zamudio JR. PMID: 38765997; PMCID: PMC11100815.
      View in: PubMed   Mentions:
    3. Single-cell and spatial transcriptomics identify a macrophage population associated with skeletal muscle fibrosis. Sci Adv. 2023 07 07; 9(27):eadd9984. Coulis G, Jaime D, Guerrero-Juarez C, Kastenschmidt JM, Farahat PK, Nguyen Q, Pervolarakis N, McLinden K, Thurlow L, Movahedi S, Hughes BS, Duarte J, Sorn A, Montoya E, Mozaffar I, Dragan M, Othy S, Joshi T, Hans CP, Kimonis V, MacLean AL, Nie Q, Wallace LM, Harper SQ, Mozaffar T, Hogarth MW, Bhattacharya S, Jaiswal JK, Golann DR, Su Q, Kessenbrock K, Stec M, Spencer MJ, Zamudio JR, Villalta SA. PMID: 37418531; PMCID: PMC10328414.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansAnimalsCells
    4. Single-cell and spatial transcriptomics identify a macrophage population associated with skeletal muscle fibrosis. bioRxiv. 2023 Apr 18. Coulis G, Jaime D, Guerrero-Juarez C, Kastenschmidt JM, Farahat PK, Nguyen Q, Pervolarakis N, McLinden K, Thurlow L, Movahedi S, Duarte J, Sorn A, Montoya E, Mozaffar I, Dragan M, Othy S, Joshi T, Hans CP, Kimonis V, MacLean AL, Nie Q, Wallace LM, Harper SQ, Mozaffar T, Hogarth MW, Bhattacharya S, Jaiswal JK, Golann DR, Su Q, Kessenbrock K, Stec M, Spencer MJ, Zamudio JR, Villalta SA. PMID: 37131694; PMCID: PMC10153153.
      View in: PubMed   Mentions:
    5. Overexpressed Malat1 Drives Metastasis through Inflammatory Reprogramming of Lung Adenocarcinoma Microenvironment. bioRxiv. 2023 Mar 23. Mart Nez-Terroba E, de Miguel FJ, Li V, Robles-Oteiza C, Politi K, Zamudio JR, Dimitrova N. PMID: 36993368; PMCID: PMC10055261.
      View in: PubMed   Mentions:
    6. Divergent roles for KLF4 and TFCP2L1 in naive ground state pluripotency and human primordial germ cell development. Stem Cell Res. 2021 08; 55:102493. Hancock GV, Liu W, Peretz L, Chen D, Gell JJ, Collier AJ, Zamudio JR, Plath K, Clark AT. PMID: 34399163; PMCID: PMC8969886.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    7. The p53 transcriptional response across tumor types reveals core and senescence-specific signatures modulated by long noncoding RNAs. Proc Natl Acad Sci U S A. 2021 08 03; 118(31). Tesfaye E, Martinez-Terroba E, Bendor J, Winkler L, Olivero C, Chen K, Feldser DM, Zamudio JR, Dimitrova N. PMID: 34326251; PMCID: PMC8346867.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    8. Mitochondrial apoptotic priming is a key determinant of cell fate upon p53 restoration. Proc Natl Acad Sci U S A. 2021 06 08; 118(23). Sánchez-Rivera FJ, Ryan J, Soto-Feliciano YM, Clare Beytagh M, Xuan L, Feldser DM, Hemann MT, Zamudio J, Dimitrova N, Letai A, Jacks T. PMID: 34074758; PMCID: PMC8201929.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimalsCells
    9. p53 Activates the Long Noncoding RNA Pvt1b to Inhibit Myc and Suppress Tumorigenesis. Mol Cell. 2020 02 20; 77(4):761-774.e8. Olivero CE, Martínez-Terroba E, Zimmer J, Liao C, Tesfaye E, Hooshdaran N, Schofield JA, Bendor J, Fang D, Simon MD, Zamudio JR, Dimitrova N. PMID: 31973890; PMCID: PMC7184554.
      View in: PubMed   Mentions: 81     Fields:    Translation:HumansAnimalsCells
    10. Temporal Control of the TGF-β Signaling Network by Mouse ESC MicroRNA Targets of Different Affinities. Cell Rep. 2019 11 26; 29(9):2702-2717.e7. Kelly TJ, Brümmer A, Hooshdaran N, Tariveranmoshabad M, Zamudio JR. PMID: 31775039; PMCID: PMC6939994.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCells
    11. Sequestration of microRNA-mediated target repression by the Ago2-associated RNA-binding protein FAM120A. RNA. 2019 10; 25(10):1291-1297. Kelly TJ, Suzuki HI, Zamudio JR, Suzuki M, Sharp PA. PMID: 31289130; PMCID: PMC6800481.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    12. Endogenous miRNA and target concentrations determine susceptibility to potential ceRNA competition. Mol Cell. 2014 Nov 06; 56(3):347-359. Bosson AD, Zamudio JR, Sharp PA. PMID: 25449132; PMCID: PMC5048918.
      View in: PubMed   Mentions: 218     Fields:    Translation:AnimalsCells
    13. LincRNA-p21 activates p21 in cis to promote Polycomb target gene expression and to enforce the G1/S checkpoint. Mol Cell. 2014 Jun 05; 54(5):777-90. Dimitrova N, Zamudio JR, Jong RM, Soukup D, Resnick R, Sarma K, Ward AJ, Raj A, Lee JT, Sharp PA, Jacks T. PMID: 24857549; PMCID: PMC4103188.
      View in: PubMed   Mentions: 251     Fields:    Translation:AnimalsCells
    14. Argonaute-bound small RNAs from promoter-proximal RNA polymerase II. Cell. 2014 Feb 27; 156(5):920-34. Zamudio JR, Kelly TJ, Sharp PA. PMID: 24581493; PMCID: PMC4111103.
      View in: PubMed   Mentions: 74     Fields:    Translation:HumansAnimalsCells
    15. Antisense RNA polymerase II divergent transcripts are P-TEFb dependent and substrates for the RNA exosome. Proc Natl Acad Sci U S A. 2011 Jun 28; 108(26):10460-5. Flynn RA, Almada AE, Zamudio JR, Sharp PA. PMID: 21670248; PMCID: PMC3127934.
      View in: PubMed   Mentions: 125     Fields:    Translation:AnimalsCells
    16. 2'-O-ribose methylation of cap2 in human: function and evolution in a horizontally mobile family. Nucleic Acids Res. 2011 Jun; 39(11):4756-68. Werner M, Purta E, Kaminska KH, Cymerman IA, Campbell DA, Mittra B, Zamudio JR, Sturm NR, Jaworski J, Bujnicki JM. PMID: 21310715; PMCID: PMC3113572.
      View in: PubMed   Mentions: 71     Fields:    Translation:HumansCells
    17. Hypermethylated cap 4 maximizes Trypanosoma brucei translation. Mol Microbiol. 2009 Jun; 72(5):1100-10. Zamudio JR, Mittra B, Campbell DA, Sturm NR. PMID: 19504740; PMCID: PMC2859698.
      View in: PubMed   Mentions: 25     Fields:    Translation:AnimalsCells
    18. Trypanosoma brucei spliced leader RNA maturation by the cap 1 2'-O-ribose methyltransferase and SLA1 H/ACA snoRNA pseudouridine synthase complex. Mol Cell Biol. 2009 Mar; 29(5):1202-11. Zamudio JR, Mittra B, Chattopadhyay A, Wohlschlegel JA, Sturm NR, Campbell DA. PMID: 19103757; PMCID: PMC2643836.
      View in: PubMed   Mentions: 18     Fields:    Translation:Animals
    19. The TbMTr1 spliced leader RNA cap 1 2'-O-ribose methyltransferase from Trypanosoma brucei acts with substrate specificity. J Biol Chem. 2008 Feb 08; 283(6):3161-3172. Mittra B, Zamudio JR, Bujnicki JM, Stepinski J, Darzynkiewicz E, Campbell DA, Sturm NR. PMID: 18048356.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    20. The 2'-O-ribose methyltransferase for cap 1 of spliced leader RNA and U1 small nuclear RNA in Trypanosoma brucei. Mol Cell Biol. 2007 Sep; 27(17):6084-92. Zamudio JR, Mittra B, Foldynová-Trantírková S, Zeiner GM, Lukes J, Bujnicki JM, Sturm NR, Campbell DA. PMID: 17606627; PMCID: PMC1952150.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    21. Complete cap 4 formation is not required for viability in Trypanosoma brucei. Eukaryot Cell. 2006 Jun; 5(6):905-15. Zamudio JR, Mittra B, Zeiner GM, Feder M, Bujnicki JM, Sturm NR, Campbell DA. PMID: 16757738; PMCID: PMC1489268.
      View in: PubMed   Mentions: 24     Fields:    Translation:AnimalsCells
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