Amander Therese Clark

Title(s)Professor, Molecular, Cell and Developmental Biology
SchoolCollege of Letters and Science
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    Collapse Biography 
    Collapse Education and Training
    University of Melbourne, AustraliaBSc04/1995Cell and Developmental Biology
    University of Melbourne, AustraliaPhD03/1999Cell and Developmental Biology
    Baylor College of Medicine, USAPostdoc08/2022Genetics
    University of California, San Francisco, USAAssistant Researcher06/2006Stem Cell Biology
    Collapse Awards and Honors
    Australian and New Zealand Society for Reproductive Biology2022Founders Medal
    Concern Foundation2015Young Investigator Prize
    Lance Armstrong Foundation2007Young Investigator Prize
    International Society for Stem Cell Research2003Young Investigator Award

    Collapse Overview 
    Collapse Overview
    Amander Clark, PhD is the Founding Director of the UCLA Center for Reproductive Science, Health and Education. The goal of the Center is to provide a home for researchers and students interested in the science and social science of reproductive bodies, pregnancy and pregnancy outcomes. She is also a Professor of Molecular Cell and Developmental Biology in the College of Letters and Science. Professor Clark is an award-winning scientist and internationally recognized expert on topics in stem cell biology and reproductive science, being regularly invited to appear as a subject matter expert for media outlets including the New York Times, the Economist, the New Yorker and Public Radio. Results from the Clark Lab provide the basis for engineering models of reproductive organs. Her current emphasis is on engineering models of the ovary to understand ovarian development, as well as ovarian disease and dysfunction which affect millions of women and girls around the world. She also serves on the National Academies of Science Engineering and Medicine Board of Health Sciences Policy. In 2023 Professor Clark began her elected role as President of the International Society for Stem Cell Research, a global non-profit that promotes excellence in stem cell science and applications to human health.

    Collapse Research 
    Collapse Research Activities and Funding
    Towards a preclinical model for overcoming infertility with induced pluripotent stem cells
    NIH R01HD098278Jun 1, 2019 - May 31, 2024
    Role: Principal Investigator
    2016 Mammalian Reproduction Gordon Research Conference
    NIH R13HD089561Jul 16, 2016 - Jul 15, 2017
    Role: Principal Investigator
    Cellular and Molecular Basis of Human Primordial Germ Cell Specification
    NIH R01HD079546Dec 20, 2014 - Apr 30, 2025
    Role: Principal Investigator
    SCDB Meeting: Innovations in Development
    NIH R13HD074374Aug 5, 2012 - Jul 31, 2013
    Role: Co-Principal Investigator
    Understanding epigenetic remodeling in primordial germ cells
    NIH R01HD058047Apr 1, 2008 - Apr 30, 2024
    Role: Principal Investigator

    Collapse ORNG Applications 
    Collapse Featured Publications

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    1. Human developmental biology - a global perspective. Development. 2024 Sep 01; 151(17). Clark AT, Goolam M, Hanna JH, Long K, Nicol D, Petropoulos S, Saitou M, Tam PPL, Wang H. PMID: 39279534.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    2. When boundaries benefit science and society. Cell. 2024 Jun 20; 187(13):3187-3193. Clark AT, Rossant J, Lovell-Badge R. PMID: 38906094.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    3. Derivation of human primordial germ cell-like cells in an embryonic-like culture. Nat Commun. 2024 Jan 02; 15(1):167. Esfahani SN, Zheng Y, Arabpour A, Irizarry AMR, Kobayashi N, Xue X, Shao Y, Zhao C, Agranonik NL, Sparrow M, Hunt TJ, Faith J, Lara MJ, Wu QY, Silber S, Petropoulos S, Yang R, Chien KR, Clark AT, Fu J. PMID: 38167821; PMCID: PMC10762101.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    4. Metabolic memory of Δ9-tetrahydrocannabinol exposure in pluripotent stem cells and primordial germ cells-like cells. Elife. 2023 Dec 27; 12. Verdikt R, Armstrong AA, Cheng J, Hwang YS, Clark AT, Yang X, Allard P. PMID: 38150302; PMCID: PMC10752584.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    5. Generation of a rhesus macaque induced pluripotent stem cell line (riPSC05) under feeder-free conditions. Stem Cell Res. 2023 12; 73:103241. Lara MJD, Wamaitha SE, Arabpour A, Hennebold JD, Clark AT, Sosa E. PMID: 37976652; PMCID: PMC10953572.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    6. Reconstituted ovaries self-assemble without an ovarian surface epithelium. Stem Cell Reports. 2023 11 14; 18(11):2190-2202. Sosa E, Mumu SK, Alvarado CC, Wu QY, Roberson I, Espinoza A, Hsu FM, Saito K, Hunt TJ, Faith JE, Lowe MG, DiRusso JA, Clark AT. PMID: 37890483; PMCID: PMC10679655.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    7. Human embryo models made from pluripotent stem cells are not synthetic; they aren't embryos, either. Cell Stem Cell. 2023 10 05; 30(10):1290-1293. Landecker HL, Clark AT. PMID: 37802034; PMCID: PMC10927377.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    8. Metabolic memory of Δ9-tetrahydrocannabinol exposure in pluripotent stem cells and primordial germ cells-like cells. bioRxiv. 2023 Oct 02. Verdikt R, Armstrong AA, Cheng J, Hwang YS, Clark AT, Yang X, Allard P. PMID: 36993751; PMCID: PMC10054962.
      View in: PubMed   Mentions:
    9. Single-cell analysis of the developing human ovary defines distinct insights into ovarian somatic and germline progenitors. Dev Cell. 2023 10 23; 58(20):2097-2111.e3. Wamaitha SE, Nie X, Pandolfi EC, Wang X, Yang Y, Stukenborg JB, Cairns BR, Guo J, Clark AT. PMID: 37582368; PMCID: PMC10615783.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    10. Transposable elements in early human embryo development and embryo models. Curr Opin Genet Dev. 2023 08; 81:102086. DiRusso JA, Clark AT. PMID: 37441874; PMCID: PMC10917458.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    11. TET1 facilitates specification of early human lineages including germ cells. iScience. 2023 Jul 21; 26(7):107191. Hsu FM, Wu QY, Fabyanic EB, Wei A, Wu H, Clark AT. PMID: 37456839; PMCID: PMC10345126.
      View in: PubMed   Mentions: 1  
    12. In vitro germ cell induction from fertile and infertile monozygotic twin research participants. Cell Rep Med. 2022 10 18; 3(10):100782. Pandolfi EC, Hsu FM, Duhon M, Zheng Y, Goldsmith S, Fu J, Silber SJ, Clark AT. PMID: 36260988; PMCID: PMC9589117.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    13. TGFβ superfamily signaling regulates the state of human stem cell pluripotency and capacity to create well-structured telencephalic organoids. Stem Cell Reports. 2022 10 11; 17(10):2220-2238. Watanabe M, Buth JE, Haney JR, Vishlaghi N, Turcios F, Elahi LS, Gu W, Pearson CA, Kurdian A, Baliaouri NV, Collier AJ, Miranda OA, Dunn N, Chen D, Sabri S, Torre-Ubieta L, Clark AT, Plath K, Christofk HR, Kornblum HI, Gandal MJ, Novitch BG. PMID: 36179695; PMCID: PMC9561534.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansCells
    14. EED is required for mouse primordial germ cell differentiation in the embryonic gonad. Dev Cell. 2022 06 20; 57(12):1482-1495.e5. Lowe MG, Yen MR, Hsu FM, Hosohama L, Hu Z, Chitiashvili T, Hunt TJ, Gorgy I, Bernard M, Wamaitha SE, Chen PY, Clark AT. PMID: 35679863; PMCID: PMC9278986.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    15. FGFR3 is expressed by human primordial germ cells and is repressed after meiotic initiation to form primordial oocytes. Stem Cell Reports. 2022 06 14; 17(6):1268-1278. Chitiashvili T, Hsu FM, Dror I, Plath K, Clark A. PMID: 35594860; PMCID: PMC9214056.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    16. Human reproduction is regulated by retrotransposons derived from ancient Hominidae-specific viral infections. Nat Commun. 2022 01 24; 13(1):463. Xiang X, Tao Y, DiRusso J, Hsu FM, Zhang J, Xue Z, Pontis J, Trono D, Liu W, Clark AT. PMID: 35075135; PMCID: PMC8786967.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimalsCells
    17. The role of MORC3 in silencing transposable elements in mouse embryonic stem cells. Epigenetics Chromatin. 2021 10 27; 14(1):49. Desai VP, Chouaref J, Wu H, Pastor WA, Kan RL, Oey HM, Li Z, Ho J, Vonk KKD, San Leon Granado D, Christopher MA, Clark AT, Jacobsen SE, Daxinger L. PMID: 34706774; PMCID: PMC8555065.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    18. Postpubertal spermatogonial stem cell transplantation restores functional sperm production in rhesus monkeys irradiated before and after puberty. Andrology. 2021 09; 9(5):1603-1616. Shetty G, Mitchell JM, Lam TNA, Phan TT, Zhang J, Tailor RC, Peters KA, Penedo MC, Hanna CB, Clark AT, Orwig KE, Meistrich ML. PMID: 33960147; PMCID: PMC8815151.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCellsPHPublic Health
    19. Generation of three human induced pluripotent stem cell sublines (UCLAi004-A, UCLAi004-B, and UCLAi004-C) for reproductive science research. Stem Cell Res. 2021 07; 54:102446. Pandolfi EC, Hunt TJ, Goldsmith S, Hurlbut K, Silber SJ, Clark AT. PMID: 34216981; PMCID: PMC9354709.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    20. Generation of three human induced pluripotent stem cell sublines (UCLAi005-A, UCLAi005-B and UCLAi005-C) for reproductive science research. Stem Cell Res. 2021 07; 54:102409. Pandolfi EC, Hunt TJ, Goldsmith S, Hurlbut K, Silber SJ, Clark AT. PMID: 34130154; PMCID: PMC9411073.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    21. Human embryo research, stem cell-derived embryo models and in vitro gametogenesis: Considerations leading to the revised ISSCR guidelines. Stem Cell Reports. 2021 06 08; 16(6):1416-1424. Clark AT, Brivanlou A, Fu J, Kato K, Mathews D, Niakan KK, Rivron N, Saitou M, Surani A, Tang F, Rossant J. PMID: 34048690; PMCID: PMC8190666.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansCells
    22. Modelling human blastocysts by reprogramming fibroblasts into iBlastoids. Nature. 2021 Mar; 591(7851):627-632. Liu X, Tan JP, Schröder J, Aberkane A, Ouyang JF, Mohenska M, Lim SM, Sun YBY, Chen J, Sun G, Zhou Y, Poppe D, Lister R, Clark AT, Rackham OJL, Zenker J, Polo JM. PMID: 33731926.
      View in: PubMed   Mentions: 110     Fields:    Translation:HumansCells
    23. Mammalian primordial germ cell specification. Development. 2021 03 15; 148(6). Hancock GV, Wamaitha SE, Peretz L, Clark AT. PMID: 33722957; PMCID: PMC7990907.
      View in: PubMed   Mentions: 30     Fields:    Translation:HumansAnimalsCells
    24. Generation of six human induced pluripotent stem cell sublines (MZT01E, MZT01F, MZT01N and MZT02D, MZT02G and MZT02H) for reproductive science research. Stem Cell Res. 2021 03; 51:102204. Pandolfi EC, Sosa E, Hunt TJ, Goldsmith S, Hurlbut K, Silber SJ, Clark AT. PMID: 33548810; PMCID: PMC8043044.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    25. Single-cell analysis of the developing human testis reveals somatic niche cell specification and fetal germline stem cell establishment. Cell Stem Cell. 2021 04 01; 28(4):764-778.e4. Guo J, Sosa E, Chitiashvili T, Nie X, Rojas EJ, Oliver E, DonorConnect, Plath K, Hotaling JM, Stukenborg JB, Clark AT, Cairns BR. PMID: 33453151; PMCID: PMC8026516.
      View in: PubMed   Mentions: 71     Fields:    Translation:HumansCells
    26. Female human primordial germ cells display X-chromosome dosage compensation despite the absence of X-inactivation. Nat Cell Biol. 2020 12; 22(12):1436-1446. Chitiashvili T, Dror I, Kim R, Hsu FM, Chaudhari R, Pandolfi E, Chen D, Liebscher S, Schenke-Layland K, Plath K, Clark A. PMID: 33257808; PMCID: PMC7717582.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansCells
    27. Reprogramming roadmap reveals route to human induced trophoblast stem cells. Nature. 2020 10; 586(7827):101-107. Liu X, Ouyang JF, Rossello FJ, Tan JP, Davidson KC, Valdes DS, Schröder J, Sun YBY, Chen J, Knaupp AS, Sun G, Chy HS, Huang Z, Pflueger J, Firas J, Tano V, Buckberry S, Paynter JM, Larcombe MR, Poppe D, Choo XY, O'Brien CM, Pastor WA, Chen D, Leichter AL, Naeem H, Tripathi P, Das PP, Grubman A, Powell DR, Laslett AL, David L, Nilsson SK, Clark AT, Lister R, Nefzger CM, Martelotto LG, Rackham OJL, Polo JM. PMID: 32939092.
      View in: PubMed   Mentions: 86     Fields:    Translation:HumansCells
    28. An Extended Culture System that Supports Human Primordial Germ Cell-like Cell Survival and Initiation of DNA Methylation Erasure. Stem Cell Reports. 2020 03 10; 14(3):433-446. Gell JJ, Liu W, Sosa E, Chialastri A, Hancock G, Tao Y, Wamaitha SE, Bower G, Dey SS, Clark AT. PMID: 32059791; PMCID: PMC7066331.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansCells
    29. Human Primordial Germ Cells Are Specified from Lineage-Primed Progenitors. Cell Rep. 2019 12 24; 29(13):4568-4582.e5. Chen D, Sun N, Hou L, Kim R, Faith J, Aslanyan M, Tao Y, Zheng Y, Fu J, Liu W, Kellis M, Clark A. PMID: 31875561; PMCID: PMC6939677.
      View in: PubMed   Mentions: 76     Fields:    Translation:HumansAnimalsCells
    30. Modeling Progressive Fibrosis with Pluripotent Stem Cells Identifies an Anti-fibrotic Small Molecule. Cell Rep. 2019 12 10; 29(11):3488-3505.e9. Vijayaraj P, Minasyan A, Durra A, Karumbayaram S, Mehrabi M, Aros CJ, Ahadome SD, Shia DW, Chung K, Sandlin JM, Darmawan KF, Bhatt KV, Manze CC, Paul MK, Wilkinson DC, Yan W, Clark AT, Rickabaugh TM, Wallace WD, Graeber TG, Damoiseaux R, Gomperts BN. PMID: 31825831; PMCID: PMC6927560.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimalsCells
    31. Standing on the shoulders of giants: The changing landscape of pluripotent stem cells in research. Anat Rec (Hoboken). 2020 10; 303(10):2597-2602. Clark AT. PMID: 31751000.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    32. Generation of three human induced pluripotent stem cell sublines (MZT04D, MZT04J, MZT04C) for reproductive science research. Stem Cell Res. 2019 10; 40:101576. Pandolfi EC, Rojas EJ, Sosa E, Gell JJ, Hunt TJ, Goldsmith S, Fan Y, Silber SJ, Clark AT. PMID: 31622877.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    33. Human embryo implantation modelled in microfluidic channels. Nature. 2019 09; 573(7774):350-351. Clark AT. PMID: 31530907.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    34. The TFAP2C-Regulated OCT4 Naive Enhancer Is Involved in Human Germline Formation. Cell Rep. 2018 12 26; 25(13):3591-3602.e5. Chen D, Liu W, Zimmerman J, Pastor WA, Kim R, Hosohama L, Ho J, Aslanyan M, Gell JJ, Jacobsen SE, Clark AT. PMID: 30590035; PMCID: PMC6342560.
      View in: PubMed   Mentions: 38     Fields:    Translation:HumansCells
    35. Differentiation of primate primordial germ cell-like cells following transplantation into the adult gonadal niche. Nat Commun. 2018 12 17; 9(1):5339. Sosa E, Chen D, Rojas EJ, Hennebold JD, Peters KA, Wu Z, Lam TN, Mitchell JM, Sukhwani M, Tailor RC, Meistrich ML, Orwig KE, Shetty G, Clark AT. PMID: 30559363; PMCID: PMC6297357.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansAnimalsCells
    36. Restoring Fertility with Human Induced Pluripotent Stem Cells: Are We There Yet? Cell Stem Cell. 2018 12 06; 23(6):777-779. Gell JJ, Clark AT. PMID: 30526878.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    37. TFAP2C regulates transcription in human naive pluripotency by opening enhancers. Nat Cell Biol. 2018 05; 20(5):553-564. Pastor WA, Liu W, Chen D, Ho J, Kim R, Hunt TJ, Lukianchikov A, Liu X, Polo JM, Jacobsen SE, Clark AT. PMID: 29695788; PMCID: PMC5926822.
      View in: PubMed   Mentions: 91     Fields:    Translation:HumansAnimalsCells
    38. Editorial. Stem Cell Res. 2018 05; 29:179. Clark AT, Orwig KE. PMID: 29715681.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    39. Mitochondrial DNA selection in human germ cells. Nat Cell Biol. 2018 02; 20(2):118-120. Chen D, Clark AT. PMID: 29371703.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    40. Deriving Dorsal Spinal Sensory Interneurons from Human Pluripotent Stem Cells. Stem Cell Reports. 2018 02 13; 10(2):390-405. Gupta S, Sivalingam D, Hain S, Makkar C, Sosa E, Clark A, Butler SJ. PMID: 29337120; PMCID: PMC5832443.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansCells
    41. PRDM14 is expressed in germ cell tumors with constitutive overexpression altering human germline differentiation and proliferation. Stem Cell Res. 2018 03; 27:46-56. Gell JJ, Zhao J, Chen D, Hunt TJ, Clark AT. PMID: 29324254; PMCID: PMC5858915.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansCells
    42. TRIM28-Regulated Transposon Repression Is Required for Human Germline Competency and Not Primed or Naive Human Pluripotency. Stem Cell Reports. 2018 01 09; 10(1):243-256. Tao Y, Yen MR, Chitiashvili T, Nakano H, Kim R, Hosohama L, Tan YC, Nakano A, Chen PY, Clark AT. PMID: 29290627; PMCID: PMC5768987.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimalsCells
    43. Correction: In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse. Elife. 2017 08 31; 6. Morselli M, Pastor WA, Montanini B, Nee K, Ferrari R, Fu K, Bonora G, Rubbi L, Clark AT, Ottonello S, Jacobsen SE, Pellegrini M. PMID: 28858608; PMCID: PMC5578735.
      View in: PubMed   Mentions:    Fields:    
    44. Primate Primordial Germ Cells Acquire Transplantation Potential by Carnegie Stage 23. Stem Cell Reports. 2017 07 11; 9(1):329-341. Clark AT, Gkountela S, Chen D, Liu W, Sosa E, Sukhwani M, Hennebold JD, Orwig KE. PMID: 28579394; PMCID: PMC5511048.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansAnimalsCells
    45. Modeling human infertility with pluripotent stem cells. Stem Cell Res. 2017 05; 21:187-192. Chen D, Gell JJ, Tao Y, Sosa E, Clark AT. PMID: 28431857; PMCID: PMC5498156.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    46. An integration-free, virus-free rhesus macaque induced pluripotent stem cell line (riPSC90) from embryonic fibroblasts. Stem Cell Res. 2017 05; 21:5-8. Sosa E, Kim R, Rojas EJ, Hosohama L, Hennebold JD, Orwig KE, Clark AT. PMID: 28677539; PMCID: PMC5499526.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    47. New Monoclonal Antibodies to Defined Cell Surface Proteins on Human Pluripotent Stem Cells. Stem Cells. 2017 03; 35(3):626-640. O'Brien CM, Chy HS, Zhou Q, Blumenfeld S, Lambshead JW, Liu X, Kie J, Capaldo BD, Chung TL, Adams TE, Phan T, Bentley JD, McKinstry WJ, Oliva K, McMurrick PJ, Wang YC, Rossello FJ, Lindeman GJ, Chen D, Jarde T, Clark AT, Abud HE, Visvader JE, Nefzger CM, Polo JM, Loring JF, Laslett AL. PMID: 28009074; PMCID: PMC5412944.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansAnimalsCells
    48. Nuclear Localization of Mitochondrial TCA Cycle Enzymes as a Critical Step in Mammalian Zygotic Genome Activation. Cell. 2017 Jan 12; 168(1-2):210-223.e11. Nagaraj R, Sharpley MS, Chi F, Braas D, Zhou Y, Kim R, Clark AT, Banerjee U. PMID: 28086092; PMCID: PMC5321559.
      View in: PubMed   Mentions: 133     Fields:    Translation:AnimalsCells
    49. Germline competency of human embryonic stem cells depends on eomesodermin. Biol Reprod. 2017 01 01; 97(6):850-861. Chen D, Liu W, Lukianchikov A, Hancock GV, Zimmerman J, Lowe MG, Kim R, Galic Z, Irie N, Surani MA, Jacobsen SE, Clark AT. PMID: 29091993; PMCID: PMC5803789.
      View in: PubMed   Mentions: 49     Fields:    Translation:HumansCells
    50. Human Embryonic Stem Cells Do Not Change Their X Inactivation Status during Differentiation. Cell Rep. 2017 01 03; 18(1):54-67. Patel S, Bonora G, Sahakyan A, Kim R, Chronis C, Langerman J, Fitz-Gibbon S, Rubbi L, Skelton RJP, Ardehali R, Pellegrini M, Lowry WE, Clark AT, Plath K. PMID: 27989715; PMCID: PMC5214931.
      View in: PubMed   Mentions: 54     Fields:    Translation:HumansCells
    51. Human Naive Pluripotent Stem Cells Model X Chromosome Dampening and X Inactivation. Cell Stem Cell. 2017 01 05; 20(1):87-101. Sahakyan A, Kim R, Chronis C, Sabri S, Bonora G, Theunissen TW, Kuoy E, Langerman J, Clark AT, Jaenisch R, Plath K. PMID: 27989770; PMCID: PMC5218861.
      View in: PubMed   Mentions: 116     Fields:    Translation:HumansCells
    52. Multiparameter mechanical and morphometric screening of cells. Sci Rep. 2016 12 02; 6:37863. Masaeli M, Gupta D, O'Byrne S, Tse HT, Gossett DR, Tseng P, Utada AS, Jung HJ, Young S, Clark AT, Di Carlo D. PMID: 27910869; PMCID: PMC5133672.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansAnimalsCells
    53. An integration-free, virus-free rhesus macaque induced pluripotent stem cell line (riPSC89) from embryonic fibroblasts. Stem Cell Res. 2016 09; 17(2):444-447. Sosa E, Kim R, Rojas EJ, Hosohama L, Hennebold JD, Orwig KE, Clark AT. PMID: 27879222; PMCID: PMC5123433.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    54. Stage-Specific Demethylation in Primordial Germ Cells Safeguards against Precocious Differentiation. Dev Cell. 2016 10 10; 39(1):75-86. Hargan-Calvopina J, Taylor S, Cook H, Hu Z, Lee SA, Yen MR, Chiang YS, Chen PY, Clark AT. PMID: 27618282; PMCID: PMC5064860.
      View in: PubMed   Mentions: 49     Fields:    Translation:AnimalsCells
    55. Mouse MORC3 is a GHKL ATPase that localizes to H3K4me3 marked chromatin. Proc Natl Acad Sci U S A. 2016 08 30; 113(35):E5108-16. Li S, Yen L, Pastor WA, Johnston JB, Du J, Shew CJ, Liu W, Ho J, Stender B, Clark AT, Burlingame AL, Daxinger L, Patel DJ, Jacobsen SE. PMID: 27528681; PMCID: PMC5024608.
      View in: PubMed   Mentions: 28     Fields:    Translation:AnimalsCells
    56. Naive Human Pluripotent Cells Feature a Methylation Landscape Devoid of Blastocyst or Germline Memory. Cell Stem Cell. 2016 Mar 03; 18(3):323-329. Pastor WA, Chen D, Liu W, Kim R, Sahakyan A, Lukianchikov A, Plath K, Jacobsen SE, Clark AT. PMID: 26853856; PMCID: PMC4779431.
      View in: PubMed   Mentions: 149     Fields:    Translation:HumansAnimalsCells
    57. DNA methylation remodeling in vitro and in vivo. Curr Opin Genet Dev. 2015 Oct; 34:82-7. Clark AT. PMID: 26451496; PMCID: PMC4674345.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansAnimalsCells
    58. Editorial overview: Cell reprogramming, regeneration and repair: Reprogramming: the eternal circle. Curr Opin Genet Dev. 2015 Oct; 34:v-vi. Clark AT, Zwaka TP. PMID: 26476785.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    59. PGC Reversion to Pluripotency Involves Erasure of DNA Methylation from Imprinting Control Centers followed by Locus-Specific Re-methylation. Stem Cell Reports. 2015 Sep 08; 5(3):337-49. Oliveros-Etter M, Li Z, Nee K, Hosohama L, Hargan-Calvopina J, Lee SA, Joti P, Yu J, Clark AT. PMID: 26278040; PMCID: PMC4618453.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    60. Erratum: MORC1 represses transposable elements in the mouse male germline. Nat Commun. 2015 Jul 10; 6:7604. Pastor WA, Stroud H, Nee K, Liu W, Pezic D, Manakov S, Lee SA, Moissiard G, Zamudio N, Bourc'his D, Aravin AA, Clark AT, Jacobsen SE. PMID: 26159654; PMCID: PMC5784397.
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    61. DNA Demethylation Dynamics in the Human Prenatal Germline. Cell. 2015 Jun 04; 161(6):1425-36. Gkountela S, Zhang KX, Shafiq TA, Liao WW, Hargan-Calvopiña J, Chen PY, Clark AT. PMID: 26004067; PMCID: PMC4458157.
      View in: PubMed   Mentions: 169     Fields:    Translation:HumansCells
    62. The Aorta-Gonad-Mesonephros Organ Culture Recapitulates 5hmC Reorganization and Replication-Dependent and Independent Loss of DNA Methylation in the Germline. Stem Cells Dev. 2015 Jul 01; 24(13):1536-45. Calvopina JH, Cook H, Vincent JJ, Nee K, Clark AT. PMID: 25749005; PMCID: PMC4499782.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    63. In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse. Elife. 2015 Apr 07; 4:e06205. Morselli M, Pastor WA, Montanini B, Nee K, Ferrari R, Fu K, Bonora G, Rubbi L, Clark AT, Ottonello S, Jacobsen SE, Pellegrini M. PMID: 25848745; PMCID: PMC4412109.
      View in: PubMed   Mentions: 87     Fields:    Translation:AnimalsCells
    64. Human germline differentiation charts a new course. EMBO J. 2015 Apr 15; 34(8):975-7. Chen D, Clark AT. PMID: 25787856; PMCID: PMC4406644.
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    65. The Sm protein methyltransferase PRMT5 is not required for primordial germ cell specification in mice. EMBO J. 2015 Mar 12; 34(6):748-58. Li Z, Yu J, Hosohama L, Nee K, Gkountela S, Chaudhari S, Cass AA, Xiao X, Clark AT. PMID: 25519955; PMCID: PMC4369312.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    66. MORC1 represses transposable elements in the mouse male germline. Nat Commun. 2014 Dec 12; 5:5795. Pastor WA, Stroud H, Nee K, Liu W, Pezic D, Manakov S, Lee SA, Moissiard G, Zamudio N, Bourc'his D, Aravin AA, Clark AT, Jacobsen SE. PMID: 25503965; PMCID: PMC4268658.
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    67. A big surprise in the little zygote: the curious business of losing methylated cytosines. Cell Stem Cell. 2014 Oct 02; 15(4):393-394. Gkountela S, Clark AT. PMID: 25280211; PMCID: PMC4243610.
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    68. Aneuploidy induces profound changes in gene expression, proliferation and tumorigenicity of human pluripotent stem cells. Nat Commun. 2014 Sep 08; 5:4825. Ben-David U, Arad G, Weissbein U, Mandefro B, Maimon A, Golan-Lev T, Narwani K, Clark AT, Andrews PW, Benvenisty N, Carlos Biancotti J. PMID: 25198699.
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    69. PRMT5 is required for human embryonic stem cell proliferation but not pluripotency. Stem Cell Rev Rep. 2014 Apr; 10(2):230-9. Gkountela S, Li Z, Chin CJ, Lee SA, Clark AT. PMID: 24477620; PMCID: PMC3972323.
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    70. Germline stem cells: toward the regeneration of spermatogenesis. Fertil Steril. 2014 Jan; 101(1):3-13. Valli H, Phillips BT, Shetty G, Byrne JA, Clark AT, Meistrich ML, Orwig KE. PMID: 24314923; PMCID: PMC3880407.
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    71. Mammalian protein arginine methyltransferase 7 (PRMT7) specifically targets RXR sites in lysine- and arginine-rich regions. J Biol Chem. 2013 Dec 27; 288(52):37010-25. Feng Y, Maity R, Whitelegge JP, Hadjikyriacou A, Li Z, Zurita-Lopez C, Al-Hadid Q, Clark AT, Bedford MT, Masson JY, Clarke SG. PMID: 24247247; PMCID: PMC3873558.
      View in: PubMed   Mentions: 79     Fields:    Translation:HumansAnimalsCells
    72. Human somatic cell nuclear transfer: a scientist's perspective. Mol Reprod Dev. 2013 Sep; 80(9):Fmi-Fmiii. Clark A. PMID: 24078473.
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    73. Generation and characterization of transgene-free human induced pluripotent stem cells and conversion to putative clinical-grade status. Stem Cell Res Ther. 2013 Jul 26; 4(4):87. Awe JP, Lee PC, Ramathal C, Vega-Crespo A, Durruthy-Durruthy J, Cooper A, Karumbayaram S, Lowry WE, Clark AT, Zack JA, Sebastiano V, Kohn DB, Pyle AD, Martin MG, Lipshutz GS, Phelps PE, Pera RA, Byrne JA. PMID: 23890092; PMCID: PMC3854769.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansAnimalsCells
    74. RNA-Seq Library Generation from Rare Human Cells Isolated by FACS. Bio Protoc. 2013 Jun 20; 3(12). Gkountela S, Clark AT. PMID: 27441203; PMCID: PMC4948646.
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    75. Stage-specific roles for tet1 and tet2 in DNA demethylation in primordial germ cells. Cell Stem Cell. 2013 Apr 04; 12(4):470-8. Vincent JJ, Huang Y, Chen PY, Feng S, Calvopiña JH, Nee K, Lee SA, Le T, Yoon AJ, Faull K, Fan G, Rao A, Jacobsen SE, Pellegrini M, Clark AT. PMID: 23415914; PMCID: PMC3684274.
      View in: PubMed   Mentions: 86     Fields:    Translation:AnimalsCells
    76. The ontogeny of cKIT+ human primordial germ cells proves to be a resource for human germ line reprogramming, imprint erasure and in vitro differentiation. Nat Cell Biol. 2013 Jan; 15(1):113-22. Gkountela S, Li Z, Vincent JJ, Zhang KX, Chen A, Pellegrini M, Clark AT. PMID: 23242216; PMCID: PMC3786872.
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    77. Pluripotency takes off without Blimp1. Cell Stem Cell. 2012 Jul 06; 11(1):1-2. Clark AT. PMID: 22770234; PMCID: PMC3553853.
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    78. Cdk2ap2 is a novel regulator for self-renewal of murine embryonic stem cells. Stem Cells Dev. 2012 Nov 01; 21(16):3010-8. Deshpande AM, Khalid O, Kim JJ, Kim Y, Lindgren A, Clark AT, Wong DT. PMID: 22548356; PMCID: PMC3475145.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    79. Hydrodynamic stretching of single cells for large population mechanical phenotyping. Proc Natl Acad Sci U S A. 2012 May 15; 109(20):7630-5. Gossett DR, Tse HT, Lee SA, Ying Y, Lindgren AG, Yang OO, Rao J, Clark AT, Di Carlo D. PMID: 22547795; PMCID: PMC3356639.
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    80. Single cell analysis facilitates staging of Blimp1-dependent primordial germ cells derived from mouse embryonic stem cells. PLoS One. 2011; 6(12):e28960. Vincent JJ, Li Z, Lee SA, Liu X, Etter MO, Diaz-Perez SV, Taylor SK, Gkountela S, Lindgren AG, Clark AT. PMID: 22194959; PMCID: PMC3240638.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    81. Fruitful progress to fertility: male fertility in the test tube. Nat Med. 2011 Dec 06; 17(12):1564-5. Clark AT, Phillips BT, Orwig KE. PMID: 22146462.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimals
    82. Derivation of new human embryonic stem cell lines reveals rapid epigenetic progression in vitro that can be prevented by chemical modification of chromatin. Hum Mol Genet. 2012 Feb 15; 21(4):751-64. Diaz Perez SV, Kim R, Li Z, Marquez VE, Patel S, Plath K, Clark AT. PMID: 22058289; PMCID: PMC3263987.
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    83. Epigenetically reprogramming of human embryonic stem cells by 3-deazaneplanocin a and sodium butyrate. Int J Prev Med. 2011 Apr; 2(2):73-8. Azghadi S, Clark AT. PMID: 21603011; PMCID: PMC3093775.
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    84. Mitochondrial function controls proliferation and early differentiation potential of embryonic stem cells. Stem Cells. 2011 Mar; 29(3):486-95. Mandal S, Lindgren AG, Srivastava AS, Clark AT, Banerjee U. PMID: 21425411; PMCID: PMC4374603.
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    85. Loss of Pten causes tumor initiation following differentiation of murine pluripotent stem cells due to failed repression of Nanog. PLoS One. 2011 Jan 27; 6(1):e16478. Lindgren AG, Natsuhara K, Tian E, Vincent JJ, Li X, Jiao J, Wu H, Banerjee U, Clark AT. PMID: 21304588; PMCID: PMC3029365.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    86. Identification and classification of chromosomal aberrations in human induced pluripotent stem cells. Cell Stem Cell. 2010 Oct 08; 7(4):521-31. Mayshar Y, Ben-David U, Lavon N, Biancotti JC, Yakir B, Clark AT, Plath K, Lowry WE, Benvenisty N. PMID: 20887957.
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    87. Female human iPSCs retain an inactive X chromosome. Cell Stem Cell. 2010 Sep 03; 7(3):329-42. Tchieu J, Kuoy E, Chin MH, Trinh H, Patterson M, Sherman SP, Aimiuwu O, Lindgren A, Hakimian S, Zack JA, Clark AT, Pyle AD, Lowry WE, Plath K. PMID: 20727844; PMCID: PMC2935700.
      View in: PubMed   Mentions: 141     Fields:    Translation:HumansCells
    88. Centromere protein A dynamics in human pluripotent stem cell self-renewal, differentiation and DNA damage. Hum Mol Genet. 2010 Oct 15; 19(20):3970-82. Ambartsumyan G, Gill RK, Perez SD, Conway D, Vincent J, Dalal Y, Clark AT. PMID: 20650959; PMCID: PMC2947403.
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    89. Relationship between nucleosome positioning and DNA methylation. Nature. 2010 Jul 15; 466(7304):388-92. Chodavarapu RK, Feng S, Bernatavichute YV, Chen PY, Stroud H, Yu Y, Hetzel JA, Kuo F, Kim J, Cokus SJ, Casero D, Bernal M, Huijser P, Clark AT, Krämer U, Merchant SS, Zhang X, Jacobsen SE, Pellegrini M. PMID: 20512117; PMCID: PMC2964354.
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    90. Microfluidic image cytometry for quantitative single-cell profiling of human pluripotent stem cells in chemically defined conditions. Lab Chip. 2010 May 07; 10(9):1113-9. Kamei K, Ohashi M, Gschweng E, Ho Q, Suh J, Tang J, For Yu ZT, Clark AT, Pyle AD, Teitell MA, Lee KB, Witte ON, Tseng HR. PMID: 20390128; PMCID: PMC2970622.
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    91. Egg-citing advances in generating primordial germ cells in the laboratory. Biol Reprod. 2010 Feb; 82(2):233-4. Clark AT. PMID: 20018911.
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    92. Induced pluripotent stem cells and embryonic stem cells are distinguished by gene expression signatures. Cell Stem Cell. 2009 Jul 02; 5(1):111-23. Chin MH, Mason MJ, Xie W, Volinia S, Singer M, Peterson C, Ambartsumyan G, Aimiuwu O, Richter L, Zhang J, Khvorostov I, Ott V, Grunstein M, Lavon N, Benvenisty N, Croce CM, Clark AT, Baxter T, Pyle AD, Teitell MA, Pelegrini M, Plath K, Lowry WE. PMID: 19570518; PMCID: PMC3448781.
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    93. Cyclin-dependent kinase 2-associating protein 1 commits murine embryonic stem cell differentiation through retinoblastoma protein regulation. J Biol Chem. 2009 Aug 28; 284(35):23405-14. Kim Y, Deshpande A, Dai Y, Kim JJ, Lindgren A, Conway A, Clark AT, Wong DT. PMID: 19564334; PMCID: PMC2749114.
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    94. Directed differentiation of human-induced pluripotent stem cells generates active motor neurons. Stem Cells. 2009 Apr; 27(4):806-11. Karumbayaram S, Novitch BG, Patterson M, Umbach JA, Richter L, Lindgren A, Conway AE, Clark AT, Goldman SA, Plath K, Wiedau-Pazos M, Kornblum HI, Lowry WE. PMID: 19350680; PMCID: PMC2895909.
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    95. Derivation of primordial germ cells from human embryonic and induced pluripotent stem cells is significantly improved by coculture with human fetal gonadal cells. Stem Cells. 2009 Apr; 27(4):783-95. Park TS, Galic Z, Conway AE, Lindgren A, van Handel BJ, Magnusson M, Richter L, Teitell MA, Mikkola HK, Lowry WE, Plath K, Clark AT. PMID: 19350678; PMCID: PMC4357362.
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    96. Histone h3 lysine 56 acetylation is linked to the core transcriptional network in human embryonic stem cells. Mol Cell. 2009 Feb 27; 33(4):417-27. Xie W, Song C, Young NL, Sperling AS, Xu F, Sridharan R, Conway AE, Garcia BA, Plath K, Clark AT, Grunstein M. PMID: 19250903; PMCID: PMC2671231.
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    97. A self-renewal program controls the expansion of genetically unstable cancer stem cells in pluripotent stem cell-derived tumors. Stem Cells. 2009 Jan; 27(1):18-28. Conway AE, Lindgren A, Galic Z, Pyle AD, Wu H, Zack JA, Pelligrini M, Teitell MA, Clark AT. PMID: 19224508; PMCID: PMC3194037.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansAnimalsCells
    98. Aneuploidy and early human embryo development. Hum Mol Genet. 2008 Apr 15; 17(R1):R10-5. Ambartsumyan G, Clark AT. PMID: 18632690.
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    99. Copy number variant analysis of human embryonic stem cells. Stem Cells. 2008 Jun; 26(6):1484-9. Wu H, Kim KJ, Mehta K, Paxia S, Sundstrom A, Anantharaman T, Kuraishy AI, Doan T, Ghosh J, Pyle AD, Clark A, Lowry W, Fan G, Baxter T, Mishra B, Sun Y, Teitell MA. PMID: 18369100; PMCID: PMC3901366.
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    100. UHRF1 plays a role in maintaining DNA methylation in mammalian cells. Science. 2007 Sep 21; 317(5845):1760-4. Bostick M, Kim JK, Estève PO, Clark A, Pradhan S, Jacobsen SE. PMID: 17673620.
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    101. Establishment and differentiation of human embryonic stem cell derived germ cells. Soc Reprod Fertil Suppl. 2007; 63:77-86. Clark AT. PMID: 17566263.
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    102. The stem cell identity of testicular cancer. Stem Cell Rev. 2007 Jan; 3(1):49-59. Clark AT. PMID: 17873381.
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    103. Bone morphogenetic proteins induce germ cell differentiation from human embryonic stem cells. Stem Cells Dev. 2006 Dec; 15(6):831-7. Kee K, Gonsalves JM, Clark AT, Pera RA. PMID: 17253946.
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    104. Intermolecular interactions of homologs of germ plasm components in mammalian germ cells. Dev Biol. 2007 Jan 15; 301(2):417-31. Fox MS, Clark AT, El Majdoubi M, Vigne JL, Urano J, Hostetler CE, Griswold MD, Weiner RI, Reijo Pera RA. PMID: 16996493; PMCID: PMC2563953.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    105. Modeling human germ cell development with embryonic stem cells. Regen Med. 2006 Jan; 1(1):85-93. Clark AT, Reijo Pera RA. PMID: 17465822.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    106. Human embryonic stem cell genes OCT4, NANOG, STELLAR, and GDF3 are expressed in both seminoma and breast carcinoma. Cancer. 2005 Nov 15; 104(10):2255-65. Ezeh UI, Turek PJ, Reijo RA, Clark AT. PMID: 16228988.
      View in: PubMed   Mentions: 179     Fields:    Translation:HumansCells
    107. Implementing large-scale ENU mutagenesis screens in North America. Genetica. 2004 Sep; 122(1):51-64. Clark AT, Goldowitz D, Takahashi JS, Vitaterna MH, Siepka SM, Peters LL, Frankel WN, Carlson GA, Rossant J, Nadeau JH, Justice MJ. PMID: 15619961; PMCID: PMC3774779.
      View in: PubMed   Mentions: 40     Fields:    Translation:Animals
    108. Spontaneous differentiation of germ cells from human embryonic stem cells in vitro. Hum Mol Genet. 2004 Apr 01; 13(7):727-39. Clark AT, Bodnar MS, Fox M, Rodriquez RT, Abeyta MJ, Firpo MT, Pera RA. PMID: 14962983.
      View in: PubMed   Mentions: 146     Fields:    Translation:HumansAnimalsCells
    109. Unique gene expression signatures of independently-derived human embryonic stem cell lines. Hum Mol Genet. 2004 Mar 15; 13(6):601-8. Abeyta MJ, Clark AT, Rodriguez RT, Bodnar MS, Pera RA, Firpo MT. PMID: 14749348.
      View in: PubMed   Mentions: 95     Fields:    Translation:HumansCells
    110. Mutations in a novel locus on mouse chromosome 11 resulting in male infertility associated with defects in microtubule assembly and sperm tail function. Biol Reprod. 2004 May; 70(5):1317-24. Clark AT, Firozi K, Justice MJ. PMID: 14711786.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    111. Human STELLAR, NANOG, and GDF3 genes are expressed in pluripotent cells and map to chromosome 12p13, a hotspot for teratocarcinoma. Stem Cells. 2004; 22(2):169-79. Clark AT, Rodriguez RT, Bodnar MS, Abeyta MJ, Cedars MI, Turek PJ, Firpo MT, Reijo Pera RA. PMID: 14990856.
      View in: PubMed   Mentions: 72     Fields:    Translation:HumansAnimalsCells
    112. Functional genetic analysis of mouse chromosome 11. Nature. 2003 Sep 04; 425(6953):81-6. Kile BT, Hentges KE, Clark AT, Nakamura H, Salinger AP, Liu B, Box N, Stockton DW, Johnson RL, Behringer RR, Bradley A, Justice MJ. PMID: 12955145.
      View in: PubMed   Mentions: 84     Fields:    Translation:HumansAnimalsCells
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