Matteo Pellegrini

Title(s)Professor, Molecular, Cell and Developmental Biology
SchoolCollege of Letters and Science
vCardDownload vCard
    Other Positions
    Title(s)Professor, Human Genetics

    Title(s)Professor, CA NanoSystems

    Title(s)Professor, Medicine


    Collapse Research 
    Collapse Research Activities and Funding
    Metabolic and epigenetic reprogramming of vital organs in SARS-CoV-2 induced systemic toxicity
    NIH R01DK132735Sep 17, 2021 - Aug 31, 2024
    Role: Co-Principal Investigator
    Bruins in Genomics: Dental, Oral & Craniofacial Research Training Program (BIG DOC)
    NIH R25DE030117Jan 15, 2021 - Dec 31, 2025
    Role: Co-Principal Investigator
    Role of collagen heterogeneity in remodeling of acute and chronic heart scars
    NIH R01HL149687Jul 1, 2020 - Jun 30, 2024
    Role: Co-Principal Investigator
    Enhancing the International Molecular Exchange (IMEx): Providing an Improved Community-Oriented Molecular Interactions Resource
    NIH R01GM123126Mar 1, 2018 - Feb 28, 2022
    Role: Principal Investigator
    Epigenetic clock for measuring the DNA methylation age of mouse tissues
    NIH R21AG049400May 1, 2016 - Apr 30, 2018
    Role: Co-Principal Investigator
    Biomedical Big Data Training Grant
    NIH T32LM012424May 1, 2015 - Jun 30, 2020
    Role: Principal Investigator
    Biomedical Big Data Training Grant
    NIH T32CA201160May 1, 2015 - Apr 30, 2020
    Role: Principal Investigator
    DNA methylation and its relationship to gene expression and physiologic traits
    NIH R01GM095656Jul 1, 2011 - Mar 31, 2016
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. TREM2 macrophages induced by human lipids drive inflammation in acne lesions. Sci Immunol. 2022 Jul 22; 7(73):eabo2787. Do TH, Ma F, Andrade PR, Teles R, de Andrade Silva BJ, Hu C, Espinoza A, Hsu JE, Cho CS, Kim M, Xi J, Xing X, Plazyo O, Tsoi LC, Cheng C, Kim J, Bryson BD, O'Neill AM, Colonna M, Gudjonsson JE, Klechevsky E, Lee JH, Gallo RL, Bloom BR, Pellegrini M, Modlin RL. PMID: 35867799.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    2. Testing the association of relative growth rate and adaptation to climate across natural ecotypes of Arabidopsis. New Phytol. 2022 Jul 10. Fletcher LR, Scoffoni C, Farrell C, Buckley TN, Pellegrini M, Sack L. PMID: 35811421.
      View in: PubMed   Mentions:    Fields:    
    3. Bruins-in-Genomics: Evaluation of the impact of a UCLA undergraduate summer program in computational biology on participating students. PLoS One. 2022; 17(5):e0268861. Coller HA, Beggs S, Andrews S, Maloy J, Chiu A, Sankararaman S, Pellegrini M, Freimer N, Johnson T, Papp J, Eskin E, Hoffmann A. PMID: 35622842; PMCID: PMC9140266.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    4. Integrated analysis of an in vivo model of intra-nasal exposure to instilled air pollutants reveals cell-type specific responses in the placenta. Sci Rep. 2022 05 19; 12(1):8438. Tosevska A, Ghosh S, Ganguly A, Cappelletti M, Kallapur SG, Pellegrini M, Devaskar SU. PMID: 35589747; PMCID: PMC9119931.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    5. Cell-Free RNA as a Novel Biomarker for Response to Therapy in Head & Neck Cancer. Front Oncol. 2022; 12:869108. Tosevska A, Morselli M, Basak SK, Avila L, Mehta P, Wang MB, Srivatsan ES, Pellegrini M. PMID: 35600369; PMCID: PMC9121879.
      View in: PubMed   Mentions:
    6. The effects of age, sex, weight, and breed on canid methylomes. Epigenetics. 2022 May 03; 1-16. Rubbi L, Zhang H, Feng J, He C, Kurnia P, Ratan P, Tammana A, House S, Thompson M, Farrell C, Snir S, Stahler D, Ostrander EA, vonHoldt BM, Pellegrini M. PMID: 35502722.
      View in: PubMed   Mentions:    Fields:    
    7. Transcriptional Evaluation of the Ductus Arteriosus at the Single-Cell Level Uncovers a Requirement for Vim (Vimentin) for Complete Closure. Arterioscler Thromb Vasc Biol. 2022 06; 42(6):732-742. Salvador J, Hernandez GE, Ma F, Abrahamson CW, Pellegrini M, Goldman R, Ridge KM, Iruela-Arispe ML. PMID: 35443793.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    8. High-quality genome and methylomes illustrate features underlying evolutionary success of oaks. Nat Commun. 2022 04 19; 13(1):2047. Sork VL, Cokus SJ, Fitz-Gibbon ST, Zimin AV, Puiu D, Garcia JA, Gugger PF, Henriquez CL, Zhen Y, Lohmueller KE, Pellegrini M, Salzberg SL. PMID: 35440538; PMCID: PMC9018854.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    9. Mapping human haematopoietic stem cells from haemogenic endothelium to birth. Nature. 2022 04; 604(7906):534-540. Calvanese V, Capellera-Garcia S, Ma F, Fares I, Liebscher S, Ng ES, Ekstrand S, Aguadé-Gorgorió J, Vavilina A, Lefaudeux D, Nadel B, Li JY, Wang Y, Lee LK, Ardehali R, Iruela-Arispe ML, Pellegrini M, Stanley EG, Elefanty AG, Schenke-Layland K, Mikkola HKA. PMID: 35418685.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    10. DNA methylation profiles in pneumonia patients reflect changes in cell types and pneumonia severity. Epigenetics. 2022 Mar 21; 1-15. Morselli M, Farrell C, Montoya D, Gören T, Sabirli R, Türkçüer I, Kurt Ö, Köseler A, Pellegrini M. PMID: 35311624.
      View in: PubMed   Mentions: 1     Fields:    
    11. The transcription factor Fli1 restricts the formation of memory precursor NK cells during viral infection. Nat Immunol. 2022 04; 23(4):556-567. Riggan L, Ma F, Li JH, Fernandez E, Nathanson DA, Pellegrini M, O'Sullivan TE. PMID: 35288713; PMCID: PMC8989647.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    12. Hibernation slows epigenetic ageing in yellow-bellied marmots. Nat Ecol Evol. 2022 04; 6(4):418-426. Pinho GM, Martin JGA, Farrell C, Haghani A, Zoller JA, Zhang J, Snir S, Pellegrini M, Wayne RK, Blumstein DT, Horvath S. PMID: 35256811; PMCID: PMC8986532.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    13. A complex network of interactions governs DNA methylation at telomeric regions. Nucleic Acids Res. 2022 02 22; 50(3):1449-1464. Farrell C, Vaquero-Sedas MI, Cubiles MD, Thompson M, Vega-Vaquero A, Pellegrini M, Vega-Palas MA. PMID: 35061900; PMCID: PMC8860613.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    14. Pseudotime Analysis Reveals Exponential Trends in DNA Methylation Aging with Mortality Associated Timescales. Cells. 2022 02 22; 11(5). Lapborisuth K, Farrell C, Pellegrini M. PMID: 35269389; PMCID: PMC8909670.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    15. Aortic intimal resident macrophages are essential for maintenance of the non-thrombogenic intravascular state. Nat Cardiovasc Res. 2022 Jan; 1(1):67-84. Hernandez GE, Ma F, Martinez G, Firozabadi NB, Salvador J, Juang LJ, Leung J, Zhao P, López DA, Ardehali R, Beaudin AE, Kastrup CJ, Pellegrini M, Flick MJ, Iruela-Arispe ML. PMID: 35599984; PMCID: PMC9121812.
      View in: PubMed   Mentions: 1  
    16. Epigenetic models developed for plains zebras predict age in domestic horses and endangered equids. Commun Biol. 2021 12 17; 4(1):1412. Larison B, Pinho GM, Haghani A, Zoller JA, Li CZ, Finno CJ, Farrell C, Kaelin CB, Barsh GS, Wooding B, Robeck TR, Maddox D, Pellegrini M, Horvath S. PMID: 34921240; PMCID: PMC8683477.
      View in: PubMed   Mentions: 3  Translation:Animals
    17. Combining ReACp53 with Carboplatin to Target High-Grade Serous Ovarian Cancers. Cancers (Basel). 2021 Nov 24; 13(23). Neal A, Lai T, Singh T, Rahseparian N, Grogan T, Elashoff D, Scott P, Pellegrini M, Memarzadeh S. PMID: 34885017; PMCID: PMC8657291.
      View in: PubMed   Mentions:
    18. Development of allogeneic HSC-engineered iNKT cells for off-the-shelf cancer immunotherapy. Cell Rep Med. 2021 11 16; 2(11):100449. Li YR, Zhou Y, Kim YJ, Zhu Y, Ma F, Yu J, Wang YC, Chen X, Li Z, Zeng S, Wang X, Lee D, Ku J, Tsao T, Hardoy C, Huang J, Cheng D, Montel-Hagen A, Seet CS, Crooks GM, Larson SM, Sasine JP, Wang X, Pellegrini M, Ribas A, Kohn DB, Witte O, Wang P, Yang L. PMID: 34841295; PMCID: PMC8607011.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    19. Systematic evaluation of transcriptomics-based deconvolution methods and references using thousands of clinical samples. Brief Bioinform. 2021 11 05; 22(6). Nadel BB, Oliva M, Shou BL, Mitchell K, Ma F, Montoya DJ, Mouton A, Kim-Hellmuth S, Stranger BE, Pellegrini M, Mangul S. PMID: 34346485; PMCID: PMC8768458.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    20. Fasting-mimicking diet prevents high-fat diet effect on cardiometabolic risk and lifespan. Nat Metab. 2021 10; 3(10):1342-1356. Mishra A, Mirzaei H, Guidi N, Vinciguerra M, Mouton A, Linardic M, Rappa F, Barone R, Navarrete G, Wei M, Brandhorst S, Di Biase S, Morgan TE, Ram Kumar S, Conti PS, Pellegrini M, Bernier M, de Cabo R, Longo VD. PMID: 34650272.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    21. The induction of preterm labor in rhesus macaques is determined by the  strength of immune response to intrauterine infection. PLoS Biol. 2021 09; 19(9):e3001385. Cappelletti M, Presicce P, Feiyang M, Senthamaraikannan P, Miller LA, Pellegrini M, Sim MS, Jobe AH, Divanovic S, Way SS, Chougnet CA, Kallapur SG. PMID: 34495952; PMCID: PMC8452070.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    22. NOTUM promotes thermogenic capacity and protects against diet-induced obesity in male mice. Sci Rep. 2021 08 12; 11(1):16409. Guo F, Seldin M, Péterfy M, Charugundla S, Zhou Z, Lee SD, Mouton A, Rajbhandari P, Zhang W, Pellegrini M, Tontonoz P, Lusis AJ, Shih DM. PMID: 34385484; PMCID: PMC8361163.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    23. The cellular architecture of the antimicrobial response network in human leprosy granulomas. Nat Immunol. 2021 07; 22(7):839-850. Ma F, Hughes TK, Teles RMB, Andrade PR, de Andrade Silva BJ, Plazyo O, Tsoi LC, Do T, Wadsworth MH, Oulee A, Ochoa MT, Sarno EN, Iruela-Arispe ML, Klechevsky E, Bryson B, Shalek AK, Bloom BR, Gudjonsson JE, Pellegrini M, Modlin RL. PMID: 34168371; PMCID: PMC8579511.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    24. Targeting monoamine oxidase A-regulated tumor-associated macrophage polarization for cancer immunotherapy. Nat Commun. 2021 06 10; 12(1):3530. Wang YC, Wang X, Yu J, Ma F, Li Z, Zhou Y, Zeng S, Ma X, Li YR, Neal A, Huang J, To A, Clarke N, Memarzadeh S, Pellegrini M, Yang L. PMID: 34112755; PMCID: PMC8192781.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansAnimalsCells
    25. Single-cell RNA sequencing of batch Chlamydomonas cultures reveals heterogeneity in their diurnal cycle phase. Plant Cell. 2021 05 31; 33(4):1042-1057. Ma F, Salomé PA, Merchant SS, Pellegrini M. PMID: 33585940; PMCID: PMC8226295.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    26. Targeting monoamine oxidase A for T cell-based cancer immunotherapy. Sci Immunol. 2021 05 14; 6(59). Wang X, Li B, Kim YJ, Wang YC, Li Z, Yu J, Zeng S, Ma X, Choi IY, Di Biase S, Smith DJ, Zhou Y, Li YR, Ma F, Huang J, Clarke N, To A, Gong L, Pham AT, Moon H, Pellegrini M, Yang L. PMID: 33990379.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCells
    27. BiSulfite Bolt: A bisulfite sequencing analysis platform. Gigascience. 2021 05 08; 10(5). Farrell C, Thompson M, Tosevska A, Oyetunde A, Pellegrini M. PMID: 33966074; PMCID: PMC8106542.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    28. Single-cell sequencing of human white adipose tissue identifies new cell states in health and obesity. Nat Immunol. 2021 05; 22(5):639-653. Hildreth AD, Ma F, Wong YY, Sun R, Pellegrini M, O'Sullivan TE. PMID: 33907320; PMCID: PMC8102391.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansCells
    29. GLUT1 overexpression enhances glucose metabolism and promotes neonatal heart regeneration. Sci Rep. 2021 04 21; 11(1):8669. Fajardo VM, Feng I, Chen BY, Perez-Ramirez CA, Shi B, Clark P, Tian R, Lien CL, Pellegrini M, Christofk H, Nakano H, Nakano A. PMID: 33883682; PMCID: PMC8060418.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    30. Species-Specific Relationships between DNA and Chromatin Properties of CpG Islands in Embryonic Stem Cells and Differentiated Cells. Stem Cell Reports. 2021 04 13; 16(4):899-912. Langerman J, Lopez D, Pellegrini M, Smale ST. PMID: 33770494; PMCID: PMC8072027.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    31. Human DNA methylation signatures differentiate persistent from resolving MRSA bacteremia. Proc Natl Acad Sci U S A. 2021 03 09; 118(10). Chang YL, Rossetti M, Gjertson DW, Rubbi L, Thompson M, Montoya DJ, Morselli M, Ruffin F, Hoffmann A, Pellegrini M, Fowler VG, Yeaman MR, Reed EF, with the MRSA Systems Immunology Group. PMID: 33649198; PMCID: PMC7958259.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    32. The Gene Expression Deconvolution Interactive Tool (GEDIT): accurate cell type quantification from gene expression data. Gigascience. 2021 02 16; 10(2). Nadel BB, Lopez D, Montoya DJ, Ma F, Waddel H, Khan MM, Mangul S, Pellegrini M. PMID: 33590863; PMCID: PMC7931818.
      View in: PubMed   Mentions: 11     Fields:    Translation:Animals
    33. Comparative analysis of embryo proper and suspensor transcriptomes in plant embryos with different morphologies. Proc Natl Acad Sci U S A. 2021 02 09; 118(6). Chen M, Lin JY, Wu X, Apuya NR, Henry KF, Le BH, Bui AQ, Pelletier JM, Cokus S, Pellegrini M, Harada JJ, Goldberg RB. PMID: 33536344; PMCID: PMC8017943.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    34. A High-Content Screen Identifies Drugs That Restrict Tumor Cell Extravasation across the Endothelial Barrier. Cancer Res. 2021 02 01; 81(3):619-633. Hilfenhaus G, Mompeón A, Freshman J, Prajapati DP, Hernandez G, Freitas VM, Ma F, Langenbacher AD, Mirkov S, Song D, Cho BK, Goo YA, Pellegrini M, Chen JN, Damoiseaux R, Iruela-Arispe ML. PMID: 33218969; PMCID: PMC7916904.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    35. β-Globin Lentiviral Vectors Have Reduced Titers due to Incomplete Vector RNA Genomes and Lowered Virion Production. Stem Cell Reports. 2021 01 12; 16(1):198-211. Han J, Tam K, Ma F, Tam C, Aleshe B, Wang X, Quintos JP, Morselli M, Pellegrini M, Hollis RP, Kohn DB. PMID: 33186538; PMCID: PMC7897704.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    36. The Epigenetic Pacemaker: modeling epigenetic states under an evolutionary framework. Bioinformatics. 2020 11 01; 36(17):4662-4663. Farrell C, Snir S, Pellegrini M. PMID: 32573701; PMCID: PMC7750963.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    37. Targeted bisulfite sequencing for biomarker discovery. Methods. 2021 03; 187:13-27. Morselli M, Farrell C, Rubbi L, Fehling HL, Henkhaus R, Pellegrini M. PMID: 32755621; PMCID: PMC7855209.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    38. Type V Collagen in Scar Tissue Regulates the Size of Scar after Heart Injury. Cell. 2020 08 06; 182(3):545-562.e23. Yokota T, McCourt J, Ma F, Ren S, Li S, Kim TH, Kurmangaliyev YZ, Nasiri R, Ahadian S, Nguyen T, Tan XHM, Zhou Y, Wu R, Rodriguez A, Cohn W, Wang Y, Whitelegge J, Ryazantsev S, Khademhosseini A, Teitell MA, Chiou PY, Birk DE, Rowat AC, Crosbie RH, Pellegrini M, Seldin M, Lusis AJ, Deb A. PMID: 32621799; PMCID: PMC7415659.
      View in: PubMed   Mentions: 31     Fields:    Translation:AnimalsCells
    39. Molecular signatures for inflammation vary across cancer types and correlate significantly with tumor stage, sex and vital status of patients. PLoS One. 2020; 15(4):e0221545. So AR, Si JM, Lopez D, Pellegrini M. PMID: 32330128; PMCID: PMC7182171.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    40. Impacts of ciliary neurotrophic factor on the retinal transcriptome in a mouse model of photoreceptor degeneration. Sci Rep. 2020 04 20; 10(1):6593. Wang Y, Rhee KD, Pellegrini M, Yang XJ. PMID: 32313077; PMCID: PMC7171121.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    41. TNF-Signaling Modulates Neutrophil-Mediated Immunity at the Feto-Maternal Interface During LPS-Induced Intrauterine Inflammation. Front Immunol. 2020; 11:558. Presicce P, Cappelletti M, Senthamaraikannan P, Ma F, Morselli M, Jackson CM, Mukherjee S, Miller LA, Pellegrini M, Jobe AH, Chougnet CA, Kallapur SG. PMID: 32308656; PMCID: PMC7145904.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    42. Expression of Stromal Progesterone Receptor and Differential Methylation Patterns in the Endometrium May Correlate with Response to Progesterone Therapy in Endometrial Complex Atypical Hyperplasia. Reprod Sci. 2020 09; 27(9):1778-1790. Neal AS, Nunez M, Lai T, Tosevska A, Morselli M, Amneus M, Zakhour M, Moatamed NA, Pellegrini M, Memarzadeh S. PMID: 32124398; PMCID: PMC7395059.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    43. ACTINN: automated identification of cell types in single cell RNA sequencing. Bioinformatics. 2020 01 15; 36(2):533-538. Ma F, Pellegrini M. PMID: 31359028.
      View in: PubMed   Mentions: 37     Fields:    Translation:HumansAnimals
    44. Telescope: an interactive tool for managing large-scale analysis from mobile devices. Gigascience. 2020 01 01; 9(1). Brito JJ, Mosqueiro T, Rotman J, Xue V, Chapski DJ, la Hoz J, Matias P, Martin LS, Zelikovsky A, Pellegrini M, Mangul S. PMID: 31972019; PMCID: PMC6977584.
      View in: PubMed   Mentions:    Fields:    
    45. The size of cell-free mitochondrial DNA in blood is inversely correlated with tumor burden in cancer patients. Precis Clin Med. 2019 Sep; 2(3):131-139. An Q, Hu Y, Li Q, Chen X, Huang J, Pellegrini M, Zhou XJ, Rettig M, Fan G. PMID: 31598384; PMCID: PMC6770274.
      View in: PubMed   Mentions: 6  
    46. Interactions between core histone marks and DNA methyltransferases predict DNA methylation patterns observed in human cells and tissues. Epigenetics. 2020 03; 15(3):272-282. Fu K, Bonora G, Pellegrini M. PMID: 31509087; PMCID: PMC7028327.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    47. H3K36 Methylation and the Chromodomain Protein Eaf3 Are Required for Proper Cotranscriptional Spliceosome Assembly. Cell Rep. 2019 06 25; 27(13):3760-3769.e4. Leung CS, Douglass SM, Morselli M, Obusan MB, Pavlyukov MS, Pellegrini M, Johnson TL. PMID: 31242410; PMCID: PMC6904931.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    48. Dual RNA-Seq of Human Leprosy Lesions Identifies Bacterial Determinants Linked to Host Immune Response. Cell Rep. 2019 03 26; 26(13):3574-3585.e3. Montoya DJ, Andrade P, Silva BJA, Teles RMB, Ma F, Bryson B, Sadanand S, Noel T, Lu J, Sarno E, Arnvig KB, Young D, Lahiri R, Williams DL, Fortune S, Bloom BR, Pellegrini M, Modlin RL. PMID: 30917313; PMCID: PMC6508871.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
    49. Endocardially Derived Macrophages Are Essential for Valvular Remodeling. Dev Cell. 2019 03 11; 48(5):617-630.e3. Shigeta A, Huang V, Zuo J, Besada R, Nakashima Y, Lu Y, Ding Y, Pellegrini M, Kulkarni RP, Hsiai T, Deb A, Zhou B, Nakano H, Nakano A. PMID: 30799229; PMCID: PMC6440481.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    50. A comparison between whole transcript and 3' RNA sequencing methods using Kapa and Lexogen library preparation methods. BMC Genomics. 2019 Jan 07; 20(1):9. Ma F, Fuqua BK, Hasin Y, Yukhtman C, Vulpe CD, Lusis AJ, Pellegrini M. PMID: 30616562; PMCID: PMC6323698.
      View in: PubMed   Mentions: 26     Fields:    Translation:AnimalsCells
    51. Comparison of reprogramming factor targets reveals both species-specific and conserved mechanisms in early iPSC reprogramming. BMC Genomics. 2018 Dec 22; 19(1):956. Fu K, Chronis C, Soufi A, Bonora G, Edwards M, Smale ST, Zaret KS, Plath K, Pellegrini M. PMID: 30577748; PMCID: PMC6303873.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCells
    52. Plasticity of antimicrobial and phagocytic programs in human macrophages. Immunology. 2019 02; 156(2):164-173. Montoya D, Mehta M, Ferguson BG, Teles RMB, Krutzik SR, Cruz D, Pellegrini M, Modlin RL. PMID: 30357820; PMCID: PMC6328994.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    53. A multi-tissue full lifespan epigenetic clock for mice. Aging (Albany NY). 2018 10 21; 10(10):2832-2854. Thompson MJ, Chwialkowska K, Rubbi L, Lusis AJ, Davis RC, Srivastava A, Korstanje R, Churchill GA, Horvath S, Pellegrini M. PMID: 30348905; PMCID: PMC6224226.
      View in: PubMed   Mentions: 43     Fields:    Translation:AnimalsCells
    54. A temporal transcriptome and methylome in human embryonic stem cell-derived cardiomyocytes identifies novel regulators of early cardiac development. Epigenetics. 2018; 13(10-11):1013-1026. Fu K, Nakano H, Morselli M, Chen T, Pappoe H, Nakano A, Pellegrini M. PMID: 30240284; PMCID: PMC6342070.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    55. Metabolic repair through emergence of new pathways in Escherichia coli. Nat Chem Biol. 2018 11; 14(11):1005-1009. Pontrelli S, Fricke RCB, Teoh ST, Laviña WA, Putri SP, Fitz-Gibbon S, Chung M, Pellegrini M, Fukusaki E, Liao JC. PMID: 30327558.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    56. Author Correction: Synaptic N6-methyladenosine (m6A) epitranscriptome reveals functional partitioning of localized transcripts. Nat Neurosci. 2018 Oct; 21(10):1493. Merkurjev D, Hong WT, Iida K, Oomoto I, Goldie BJ, Yamaguti H, Ohara T, Kawaguchi SY, Hirano T, Martin KC, Pellegrini M, Wang DO. PMID: 30097659.
      View in: PubMed   Mentions: 1     Fields:    
    57. Human antimicrobial cytotoxic T lymphocytes, defined by NK receptors and antimicrobial proteins, kill intracellular bacteria. Sci Immunol. 2018 08 31; 3(26). Balin SJ, Pellegrini M, Klechevsky E, Won ST, Weiss DI, Choi AW, Hakimian J, Lu J, Ochoa MT, Bloom BR, Lanier LL, Stenger S, Modlin RL. PMID: 30171080; PMCID: PMC6431239.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansCells
    58. Seed genome hypomethylated regions are enriched in transcription factor genes. Proc Natl Acad Sci U S A. 2018 08 28; 115(35):E8315-E8322. Chen M, Lin JY, Hur J, Pelletier JM, Baden R, Pellegrini M, Harada JJ, Goldberg RB. PMID: 30104383; PMCID: PMC6126732.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    59. Epigenome-wide association in adipose tissue from the METSIM cohort. Hum Mol Genet. 2018 07 15; 27(14):2586. Orozco LD, Farrell C, Hale C, Rubbi L, Rinaldi A, Civelek M, Pan C, Lam L, Montoya D, Edillor C, Seldin M, Boehnke M, Mohlke KL, Jacobsen S, Kuusisto J, Laakso M, Lusis AJ, Pellegrini M. PMID: 29893869; PMCID: PMC6030960.
      View in: PubMed   Mentions: 5     Fields:    
    60. Synaptic N6-methyladenosine (m6A) epitranscriptome reveals functional partitioning of localized transcripts. Nat Neurosci. 2018 07; 21(7):1004-1014. Merkurjev D, Hong WT, Iida K, Oomoto I, Goldie BJ, Yamaguti H, Ohara T, Kawaguchi SY, Hirano T, Martin KC, Pellegrini M, Wang DO. PMID: 29950670.
      View in: PubMed   Mentions: 63     Fields:    Translation:AnimalsCells
    61. Vav3-induced cytoskeletal dynamics contribute to heterotypic properties of endothelial barriers. J Cell Biol. 2018 08 06; 217(8):2813-2830. Hilfenhaus G, Nguyen DP, Freshman J, Prajapati D, Ma F, Song D, Ziyad S, Cuadrado M, Pellegrini M, Bustelo XR, Iruela-Arispe ML. PMID: 29858212; PMCID: PMC6080943.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansAnimalsCells
    62. The Memory of Environmental Chemical Exposure in C. elegans Is Dependent on the Jumonji Demethylases jmjd-2 and jmjd-3/utx-1. Cell Rep. 2018 05 22; 23(8):2392-2404. Camacho J, Truong L, Kurt Z, Chen YW, Morselli M, Gutierrez G, Pellegrini M, Yang X, Allard P. PMID: 29791850; PMCID: PMC6003705.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    63. Epigenome-wide association in adipose tissue from the METSIM cohort. Hum Mol Genet. 2018 05 15; 27(10):1830-1846. Orozco LD, Farrell C, Hale C, Rubbi L, Rinaldi A, Civelek M, Pan C, Lam L, Montoya D, Edillor C, Seldin M, Boehnke M, Mohlke KL, Jacobsen S, Kuusisto J, Laakso M, Lusis AJ, Pellegrini M. PMID: 29566149; PMCID: PMC5932563.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansCells
    64. Loss of MECP2 Leads to Activation of P53 and Neuronal Senescence. Stem Cell Reports. 2018 05 08; 10(5):1453-1463. Ohashi M, Korsakova E, Allen D, Lee P, Fu K, Vargas BS, Cinkornpumin J, Salas C, Park JC, Germanguz I, Langerman J, Chronis C, Kuoy E, Tran S, Xiao X, Pellegrini M, Plath K, Lowry WE. PMID: 29742391; PMCID: PMC5995366.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansCells
    65. Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages. BMC Microbiol. 2018 03 01; 18(1):19. Cheng L, Marinelli LJ, Grosset N, Fitz-Gibbon ST, Bowman CA, Dang BQ, Russell DA, Jacobs-Sera D, Shi B, Pellegrini M, Miller JF, Gautier M, Hatfull GF, Modlin RL. PMID: 29490612; PMCID: PMC5831693.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    66. High-throughput sequencing of the chloroplast and mitochondrion of Chlamydomonas reinhardtii to generate improved de novo assemblies, analyze expression patterns and transcript speciation, and evaluate diversity among laboratory strains and wild isolates. Plant J. 2018 02; 93(3):545-565. Gallaher SD, Fitz-Gibbon ST, Strenkert D, Purvine SO, Pellegrini M, Merchant SS. PMID: 29172250; PMCID: PMC5775909.
      View in: PubMed   Mentions: 35     Fields:    Translation:AnimalsCells
    67. Immunotherapy of Mild Cognitive Impairment by ω-3 Supplementation: Why Are Amyloid-β Antibodies and ω-3 Not Working in Clinical Trials? J Alzheimers Dis. 2018; 62(3):1013-1022. Fiala M, Restrepo L, Pellegrini M. PMID: 29103035; PMCID: PMC5870008.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimals
    68. Glucose inhibits cardiac muscle maturation through nucleotide biosynthesis. Elife. 2017 12 12; 6. Nakano H, Minami I, Braas D, Pappoe H, Wu X, Sagadevan A, Vergnes L, Fu K, Morselli M, Dunham C, Ding X, Stieg AZ, Gimzewski JK, Pellegrini M, Clark PM, Reue K, Lusis AJ, Ribalet B, Kurdistani SK, Christofk H, Nakatsuji N, Nakano A. PMID: 29231167; PMCID: PMC5726851.
      View in: PubMed   Mentions: 61     Fields:    Translation:HumansAnimalsCells
    69. SaVanT: a web-based tool for the sample-level visualization of molecular signatures in gene expression profiles. BMC Genomics. 2017 Oct 25; 18(1):824. Lopez D, Montoya D, Ambrose M, Lam L, Briscoe L, Adams C, Modlin RL, Pellegrini M. PMID: 29070035; PMCID: PMC5657101.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansAnimalsCells
    70. Similarity between soybean and Arabidopsis seed methylomes and loss of non-CG methylation does not affect seed development. Proc Natl Acad Sci U S A. 2017 11 07; 114(45):E9730-E9739. Lin JY, Le BH, Chen M, Henry KF, Hur J, Hsieh TF, Chen PY, Pelletier JM, Pellegrini M, Fischer RL, Harada JJ, Goldberg RB. PMID: 29078418; PMCID: PMC5692608.
      View in: PubMed   Mentions: 43     Fields:    Translation:AnimalsCells
    71. Targeted mutagenesis in a human-parasitic nematode. PLoS Pathog. 2017 Oct; 13(10):e1006675. Gang SS, Castelletto ML, Bryant AS, Yang E, Mancuso N, Lopez JB, Pellegrini M, Hallem EA. PMID: 29016680; PMCID: PMC5650185.
      View in: PubMed   Mentions: 45     Fields:    Translation:HumansAnimals
    72. Correction: In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse. Elife. 2017 08 31; 6. Morselli M, Pastor WA, Montanini B, Nee K, Ferrari R, Fu K, Bonora G, Rubbi L, Clark AT, Ottonello S, Jacobsen SE, Pellegrini M. PMID: 28858608; PMCID: PMC5578735.
      View in: PubMed   Mentions: 1     Fields:    
    73. High-Resolution Mapping of Chromatin Conformation in Cardiac Myocytes Reveals Structural Remodeling of the Epigenome in Heart Failure. Circulation. 2017 Oct 24; 136(17):1613-1625. Rosa-Garrido M, Chapski DJ, Schmitt AD, Kimball TH, Karbassi E, Monte E, Balderas E, Pellegrini M, Shih TT, Soehalim E, Liem D, Ping P, Galjart NJ, Ren S, Wang Y, Ren B, Vondriska TM. PMID: 28802249; PMCID: PMC5648689.
      View in: PubMed   Mentions: 65     Fields:    Translation:AnimalsCells
    74. Addressing the Digital Divide in Contemporary Biology: Lessons from Teaching UNIX. Trends Biotechnol. 2017 10; 35(10):901-903. Mangul S, Martin LS, Hoffmann A, Pellegrini M, Eskin E. PMID: 28720283.
      View in: PubMed   Mentions: 7     Fields:    
    75. Omega-3 fatty acids increase the unfolded protein response and improve amyloid-β phagocytosis by macrophages of patients with mild cognitive impairment. FASEB J. 2017 10; 31(10):4359-4369. Olivera-Perez HM, Lam L, Dang J, Jiang W, Rodriguez F, Rigali E, Weitzman S, Porter V, Rubbi L, Morselli M, Pellegrini M, Fiala M. PMID: 28634213; PMCID: PMC5602894.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    76. Abf1 and other general regulatory factors control ribosome biogenesis gene expression in budding yeast. Nucleic Acids Res. 2017 05 05; 45(8):4493-4506. Bosio MC, Fermi B, Spagnoli G, Levati E, Rubbi L, Ferrari R, Pellegrini M, Dieci G. PMID: 28158860; PMCID: PMC5416754.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    77. Modulation of innate immunity of patients with Alzheimer's disease by omega-3 fatty acids. FASEB J. 2017 08; 31(8):3229-3239. Fiala M, Kooij G, Wagner K, Hammock B, Pellegrini M. PMID: 28420693; PMCID: PMC5503712.
      View in: PubMed   Mentions: 16     Fields:    Translation:Humans
    78. An epigenetic aging clock for dogs and wolves. Aging (Albany NY). 2017 03 28; 9(3):1055-1068. Thompson MJ, vonHoldt B, Horvath S, Pellegrini M. PMID: 28373601; PMCID: PMC5391218.
      View in: PubMed   Mentions: 54     Fields:    Translation:AnimalsCells
    79. Regulation of Marginal Zone B-Cell Differentiation by MicroRNA-146a. Front Immunol. 2016; 7:670. King JK, Ung NM, Paing MH, Contreras JR, Alberti MO, Fernando TR, Zhang K, Pellegrini M, Rao DS. PMID: 28138326; PMCID: PMC5237642.
      View in: PubMed   Mentions: 13     Fields:    
    80. Human Embryonic Stem Cells Do Not Change Their X Inactivation Status during Differentiation. Cell Rep. 2017 01 03; 18(1):54-67. Patel S, Bonora G, Sahakyan A, Kim R, Chronis C, Langerman J, Fitz-Gibbon S, Rubbi L, Skelton RJP, Ardehali R, Pellegrini M, Lowry WE, Clark AT, Plath K. PMID: 27989715; PMCID: PMC5214931.
      View in: PubMed   Mentions: 42     Fields:    Translation:HumansCells
    81. Cardiac Fibroblasts Adopt Osteogenic Fates and Can Be Targeted to Attenuate Pathological Heart Calcification. Cell Stem Cell. 2017 02 02; 20(2):218-232.e5. Pillai ICL, Li S, Romay M, Lam L, Lu Y, Huang J, Dillard N, Zemanova M, Rubbi L, Wang Y, Lee J, Xia M, Liang O, Xie YH, Pellegrini M, Lusis AJ, Deb A. PMID: 27867037; PMCID: PMC5291784.
      View in: PubMed   Mentions: 36     Fields:    Translation:HumansAnimalsCells
    82. Mergeomics: multidimensional data integration to identify pathogenic perturbations to biological systems. BMC Genomics. 2016 11 04; 17(1):874. Shu L, Zhao Y, Kurt Z, Byars SG, Tukiainen T, Kettunen J, Orozco LD, Pellegrini M, Lusis AJ, Ripatti S, Zhang B, Inouye M, Mäkinen VP, Yang X. PMID: 27814671; PMCID: PMC5097440.
      View in: PubMed   Mentions: 42     Fields:    Translation:HumansAnimals
    83. Reversible Regulation of Promoter and Enhancer Histone Landscape by DNA Methylation in Mouse Embryonic Stem Cells. Cell Rep. 2016 09 27; 17(1):289-302. King AD, Huang K, Rubbi L, Liu S, Wang CY, Wang Y, Pellegrini M, Fan G. PMID: 27681438; PMCID: PMC5507178.
      View in: PubMed   Mentions: 53     Fields:    Translation:AnimalsCells
    84. Increased intermediate M1-M2 macrophage polarization and improved cognition in mild cognitive impairment patients on ω-3 supplementation. FASEB J. 2017 01; 31(1):148-160. Famenini S, Rigali EA, Olivera-Perez HM, Dang J, Chang MT, Halder R, Rao RV, Pellegrini M, Porter V, Bredesen D, Fiala M. PMID: 27677546; PMCID: PMC5161513.
      View in: PubMed   Mentions: 34     Fields:    Translation:HumansCells
    85. Gestational food restriction decreases placental interleukin-10 expression and markers of autophagy and endoplasmic reticulum stress in murine intrauterine growth restriction. Nutr Res. 2016 10; 36(10):1055-1067. Chu A, Thamotharan S, Ganguly A, Wadehra M, Pellegrini M, Devaskar SU. PMID: 27865347; PMCID: PMC5119922.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansAnimalsCells
    86. CRISPR/Cas9-Mediated Correction of the Sickle Mutation in Human CD34+ cells. Mol Ther. 2016 09; 24(9):1561-9. Hoban MD, Lumaquin D, Kuo CY, Romero Z, Long J, Ho M, Young CS, Mojadidi M, Fitz-Gibbon S, Cooper AR, Lill GR, Urbinati F, Campo-Fernandez B, Bjurstrom CF, Pellegrini M, Hollis RP, Kohn DB. PMID: 27406980; PMCID: PMC5113113.
      View in: PubMed   Mentions: 70     Fields:    Translation:HumansCells
    87. Plant hydraulics as a central hub integrating plant and ecosystem function: meeting report for 'Emerging Frontiers in Plant Hydraulics' (Washington, DC, May 2015). Plant Cell Environ. 2016 09; 39(9):2085-94. Sack L, Ball MC, Brodersen C, Davis SD, Des Marais DL, Donovan LA, Givnish TJ, Hacke UG, Huxman T, Jansen S, Jacobsen AL, Johnson DM, Koch GW, Maurel C, McCulloh KA, McDowell NG, McElrone A, Meinzer FC, Melcher PJ, North G, Pellegrini M, Pockman WT, Pratt RB, Sala A, Santiago LS, Savage JA, Scoffoni C, Sevanto S, Sperry J, Tyerman SD, Way D, Holbrook NM. PMID: 27037757.
      View in: PubMed   Mentions: 8     Fields:    Translation:Animals
    88. Astrocytes Can Adopt Endothelial Cell Fates in a p53-Dependent Manner. Mol Neurobiol. 2017 08; 54(6):4584-4596. Brumm AJ, Nunez S, Doroudchi MM, Kawaguchi R, Duan J, Pellegrini M, Lam L, Carmichael ST, Deb A, Hinman JD. PMID: 27389775; PMCID: PMC5219956.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    89. Epigenetic changes in T-cell and monocyte signatures and production of neurotoxic cytokines in ALS patients. FASEB J. 2016 10; 30(10):3461-3473. Lam L, Chin L, Halder RC, Sagong B, Famenini S, Sayre J, Montoya D, Rubbi L, Pellegrini M, Fiala M. PMID: 27368295; PMCID: PMC5024692.
      View in: PubMed   Mentions: 27     Fields:    Translation:HumansAnimalsCells
    90. CRISPR-Mediated VHL Knockout Generates an Improved Model for Metastatic Renal Cell Carcinoma. Sci Rep. 2016 06 30; 6:29032. Schokrpur S, Hu J, Moughon DL, Liu P, Lin LC, Hermann K, Mangul S, Guan W, Pellegrini M, Xu H, Wu L. PMID: 27358011; PMCID: PMC4928183.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansAnimalsCells
    91. Epigenetic changes mediated by polycomb repressive complex 2 and E2a are associated with drug resistance in a mouse model of lymphoma. Genome Med. 2016 05 04; 8(1):54. Flinders C, Lam L, Rubbi L, Ferrari R, Fitz-Gibbon S, Chen PY, Thompson M, Christofk H, B Agus D, Ruderman D, Mallick P, Pellegrini M. PMID: 27146673; PMCID: PMC4857420.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    92. Systems Nutrigenomics Reveals Brain Gene Networks Linking Metabolic and Brain Disorders. EBioMedicine. 2016 May; 7:157-66. Meng Q, Ying Z, Noble E, Zhao Y, Agrawal R, Mikhail A, Zhuang Y, Tyagi E, Zhang Q, Lee JH, Morselli M, Orozco L, Guo W, Kilts TM, Zhu J, Zhang B, Pellegrini M, Xiao X, Young MF, Gomez-Pinilla F, Yang X. PMID: 27322469; PMCID: PMC4909610.
      View in: PubMed   Mentions: 34     Fields:    Translation:HumansAnimals
    93. Species-wide patterns of DNA methylation variation in Quercus lobata and their association with climate gradients. Mol Ecol. 2016 Apr; 25(8):1665-80. Gugger PF, Fitz-Gibbon S, PellEgrini M, Sork VL. PMID: 26833902.
      View in: PubMed   Mentions: 37     Fields:    Translation:AnimalsCells
    94. Rapid Changes in the Translatome during the Conversion of Growth Cones to Synaptic Terminals. Cell Rep. 2016 Feb 09; 14(5):1258-1271. Zhang KX, Tan L, Pellegrini M, Zipursky SL, McEwen JM. PMID: 26832407.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    95. DNA Methylation Indicates Susceptibility to Isoproterenol-Induced Cardiac Pathology and Is Associated With Chromatin States. Circ Res. 2016 Mar 04; 118(5):786-97. Chen H, Orozco LD, Wang J, Rau CD, Rubbi L, Ren S, Wang Y, Pellegrini M, Lusis AJ, Vondriska TM. PMID: 26838786; PMCID: PMC4779427.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    96. Anti-inflammatory therapies of amyotrophic lateral sclerosis guided by immune pathways. Am J Neurodegener Dis. 2015; 4(2):28-39. Lam L, Halder RC, Montoya DJ, Rubbi L, Rinaldi A, Sagong B, Weitzman S, Rubattino R, Singh RR, Pellegrini M, Fiala M. PMID: 26807342; PMCID: PMC4700124.
      View in: PubMed   Mentions: 6  
    97. A high-throughput screen of inactive X chromosome reactivation identifies the enhancement of DNA demethylation by 5-aza-2'-dC upon inhibition of ribonucleotide reductase. Epigenetics Chromatin. 2015; 8:42. Minkovsky A, Sahakyan A, Bonora G, Damoiseaux R, Dimitrova E, Rubbi L, Pellegrini M, Radu CG, Plath K. PMID: 26468331; PMCID: PMC4604769.
      View in: PubMed   Mentions: 20     Fields:    
    98. Dynamic Changes in the Transcriptome and Methylome of Chlamydomonas reinhardtii throughout Its Life Cycle. Plant Physiol. 2015 Dec; 169(4):2730-43. Lopez D, Hamaji T, Kropat J, De Hoff P, Morselli M, Rubbi L, Fitz-Gibbon S, Gallaher SD, Merchant SS, Umen J, Pellegrini M. PMID: 26450704; PMCID: PMC4677889.
      View in: PubMed   Mentions: 28     Fields:    Translation:AnimalsCells
    99. Distinct Shifts in Microbiota Composition during Drosophila Aging Impair Intestinal Function and Drive Mortality. Cell Rep. 2015 Sep 08; 12(10):1656-67. Clark RI, Salazar A, Yamada R, Fitz-Gibbon S, Morselli M, Alcaraz J, Rana A, Rera M, Pellegrini M, Ja WW, Walker DW. PMID: 26321641; PMCID: PMC4565751.
      View in: PubMed   Mentions: 160     Fields:    Translation:AnimalsCells
    100. Genome-wide signature of local adaptation linked to variable CpG methylation in oak populations. Mol Ecol. 2015 Aug; 24(15):3823-30. Platt A, Gugger PF, Pellegrini M, Sork VL. PMID: 25951436.
      View in: PubMed   Mentions: 30     Fields:    Translation:AnimalsCells
    101. Pancreatic cancer patient survival correlates with DNA methylation of pancreas development genes. PLoS One. 2015; 10(6):e0128814. Thompson MJ, Rubbi L, Dawson DW, Donahue TR, Pellegrini M. PMID: 26039411; PMCID: PMC4454596.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansCells
    102. Epigenome-wide association of liver methylation patterns and complex metabolic traits in mice. Cell Metab. 2015 Jun 02; 21(6):905-17. Orozco LD, Morselli M, Rubbi L, Guo W, Go J, Shi H, Lopez D, Furlotte NA, Bennett BJ, Farber CR, Ghazalpour A, Zhang MQ, Bahous R, Rozen R, Lusis AJ, Pellegrini M. PMID: 26039453; PMCID: PMC4454894.
      View in: PubMed   Mentions: 50     Fields:    Translation:AnimalsCells
    103. In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse. Elife. 2015 Apr 07; 4:e06205. Morselli M, Pastor WA, Montanini B, Nee K, Ferrari R, Fu K, Bonora G, Rubbi L, Clark AT, Ottonello S, Jacobsen SE, Pellegrini M. PMID: 25848745; PMCID: PMC4412109.
      View in: PubMed   Mentions: 76     Fields:    Translation:AnimalsCells
    104. A Genome-Wide Chronological Study of Gene Expression and Two Histone Modifications, H3K4me3 and H3K9ac, during Developmental Leaf Senescence. Plant Physiol. 2015 Aug; 168(4):1246-61. Brusslan JA, Bonora G, Rus-Canterbury AM, Tariq F, Jaroszewicz A, Pellegrini M. PMID: 25802367; PMCID: PMC4528724.
      View in: PubMed   Mentions: 35     Fields:    Translation:AnimalsCells
    105. Scl binds to primed enhancers in mesoderm to regulate hematopoietic and cardiac fate divergence. EMBO J. 2015 Mar 12; 34(6):759-77. Org T, Duan D, Ferrari R, Montel-Hagen A, Van Handel B, Kerényi MA, Sasidharan R, Rubbi L, Fujiwara Y, Pellegrini M, Orkin SH, Kurdistani SK, Mikkola HK. PMID: 25564442; PMCID: PMC4369313.
      View in: PubMed   Mentions: 37     Fields:    Translation:HumansCells
    106. Repression of Sox9 by Jag1 is continuously required to suppress the default chondrogenic fate of vascular smooth muscle cells. Dev Cell. 2014 Dec 22; 31(6):707-21. Briot A, Jaroszewicz A, Warren CM, Lu J, Touma M, Rudat C, Hofmann JJ, Airik R, Weinmaster G, Lyons K, Wang Y, Kispert A, Pellegrini M, Iruela-Arispe ML. PMID: 25535917; PMCID: PMC4311887.
      View in: PubMed   Mentions: 28     Fields:    Translation:AnimalsCells
    107. Adenovirus small E1A employs the lysine acetylases p300/CBP and tumor suppressor Rb to repress select host genes and promote productive virus infection. Cell Host Microbe. 2014 Nov 12; 16(5):663-76. Ferrari R, Gou D, Jawdekar G, Johnson SA, Nava M, Su T, Yousef AF, Zemke NR, Pellegrini M, Kurdistani SK, Berk AJ. PMID: 25525796; PMCID: PMC4418520.
      View in: PubMed   Mentions: 58     Fields:    Translation:HumansCells
    108. A comprehensive resource of genomic, epigenomic and transcriptomic sequencing data for the black truffle Tuber melanosporum. Gigascience. 2014; 3:25. Chen PY, Montanini B, Liao WW, Morselli M, Jaroszewicz A, Lopez D, Ottonello S, Pellegrini M. PMID: 25392735; PMCID: PMC4228822.
      View in: PubMed   Mentions: 7     Fields:    
    109. Genome-wide Hi-C analyses in wild-type and mutants reveal high-resolution chromatin interactions in Arabidopsis. Mol Cell. 2014 Sep 04; 55(5):694-707. Feng S, Cokus SJ, Schubert V, Zhai J, Pellegrini M, Jacobsen SE. PMID: 25132175; PMCID: PMC4347903.
      View in: PubMed   Mentions: 121     Fields:    Translation:AnimalsCells
    110. Comparison of molecular signatures from multiple skin diseases identifies mechanisms of immunopathogenesis. J Invest Dermatol. 2015 Jan; 135(1):151-159. Inkeles MS, Scumpia PO, Swindell WR, Lopez D, Teles RMB, Graeber TG, Meller S, Homey B, Elder JT, Gilliet M, Modlin RL, Pellegrini M. PMID: 25111617; PMCID: PMC4268388.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansCells
    111. Detecting communities based on network topology. Sci Rep. 2014 Jul 18; 4:5739. Liu W, Pellegrini M, Wang X. PMID: 25033828; PMCID: PMC4102921.
      View in: PubMed   Mentions: 12     Fields:    
    112. The effects of perinatal testosterone exposure on the DNA methylome of the mouse brain are late-emerging. Biol Sex Differ. 2014; 5:8. Ghahramani NM, Ngun TC, Chen PY, Tian Y, Krishnan S, Muir S, Rubbi L, Arnold AP, de Vries GJ, Forger NG, Pellegrini M, Vilain E. PMID: 24976947; PMCID: PMC4074311.
      View in: PubMed   Mentions: 61     Fields:    
    113. Widespread use of non-productive alternative splice sites in Saccharomyces cerevisiae. PLoS Genet. 2014 Apr; 10(4):e1004249. Kawashima T, Douglass S, Gabunilas J, Pellegrini M, Chanfreau GF. PMID: 24722551; PMCID: PMC3983031.
      View in: PubMed   Mentions: 46     Fields:    Translation:AnimalsCells
    114. Nkx2-5 suppresses the proliferation of atrial myocytes and conduction system. Circ Res. 2014 Mar 28; 114(7):1103-13. Nakashima Y, Yanez DA, Touma M, Nakano H, Jaroszewicz A, Jordan MC, Pellegrini M, Roos KP, Nakano A. PMID: 24563458.
      View in: PubMed   Mentions: 30     Fields:    Translation:AnimalsCells
    115. SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation. Nature. 2014 03 06; 507(7490):124-128. Johnson LM, Du J, Hale CJ, Bischof S, Feng S, Chodavarapu RK, Zhong X, Marson G, Pellegrini M, Segal DJ, Patel DJ, Jacobsen SE. PMID: 24463519; PMCID: PMC3963826.
      View in: PubMed   Mentions: 127     Fields:    Translation:AnimalsCells
    116. FamAnn: an automated variant annotation pipeline to facilitate target discovery for family-based sequencing studies. Bioinformatics. 2014 04 15; 30(8):1175-1176. Yao J, Zhang KX, Kramer M, Pellegrini M, McCombie WR. PMID: 24395755.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    117. A panel of CpG methylation sites distinguishes human embryonic stem cells and induced pluripotent stem cells. Stem Cell Reports. 2014 Jan 14; 2(1):36-43. Huang K, Shen Y, Xue Z, Bibikova M, April C, Liu Z, Cheng L, Nagy A, Pellegrini M, Fan JB, Fan G. PMID: 24511466; PMCID: PMC3916755.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansCells
    118. Characterizing the strand-specific distribution of non-CpG methylation in human pluripotent cells. Nucleic Acids Res. 2014 Mar; 42(5):3009-16. Guo W, Chung WY, Qian M, Pellegrini M, Zhang MQ. PMID: 24343027; PMCID: PMC3950701.
      View in: PubMed   Mentions: 32     Fields:    Translation:HumansCells
    119. Epigenetic differences between shoots and roots in Arabidopsis reveals tissue-specific regulation. Epigenetics. 2014 Feb; 9(2):236-42. Widman N, Feng S, Jacobsen SE, Pellegrini M. PMID: 24169618; PMCID: PMC3962533.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    120. Proteomic and genomic approaches reveal critical functions of H3K9 methylation and heterochromatin protein-1γ in reprogramming to pluripotency. Nat Cell Biol. 2013 Jul; 15(7):872-82. Sridharan R, Gonzales-Cope M, Chronis C, Bonora G, McKee R, Huang C, Patel S, Lopez D, Mishra N, Pellegrini M, Carey M, Garcia BA, Plath K. PMID: 23748610; PMCID: PMC3733997.
      View in: PubMed   Mentions: 120     Fields:    Translation:AnimalsCells
    121. Plants regenerated from tissue culture contain stable epigenome changes in rice. Elife. 2013 Mar 19; 2:e00354. Stroud H, Ding B, Simon SA, Feng S, Bellizzi M, Pellegrini M, Wang GL, Meyers BC, Jacobsen SE. PMID: 23539454; PMCID: PMC3601819.
      View in: PubMed   Mentions: 95     Fields:    Translation:AnimalsCells
    122. Stage-specific roles for tet1 and tet2 in DNA demethylation in primordial germ cells. Cell Stem Cell. 2013 Apr 04; 12(4):470-8. Vincent JJ, Huang Y, Chen PY, Feng S, Calvopiña JH, Nee K, Lee SA, Le T, Yoon AJ, Faull K, Fan G, Rao A, Jacobsen SE, Pellegrini M, Clark AT. PMID: 23415914; PMCID: PMC3684274.
      View in: PubMed   Mentions: 76     Fields:    Translation:AnimalsCells
    123. Retrograde bilin signaling enables Chlamydomonas greening and phototrophic survival. Proc Natl Acad Sci U S A. 2013 Feb 26; 110(9):3621-6. Duanmu D, Casero D, Dent RM, Gallaher S, Yang W, Rockwell NC, Martin SS, Pellegrini M, Niyogi KK, Merchant SS, Grossman AR, Lagarias JC. PMID: 23345435; PMCID: PMC3587268.
      View in: PubMed   Mentions: 39     Fields:    Translation:AnimalsCells
    124. The ontogeny of cKIT+ human primordial germ cells proves to be a resource for human germ line reprogramming, imprint erasure and in vitro differentiation. Nat Cell Biol. 2013 Jan; 15(1):113-22. Gkountela S, Li Z, Vincent JJ, Zhang KX, Chen A, Pellegrini M, Clark AT. PMID: 23242216; PMCID: PMC3786872.
      View in: PubMed   Mentions: 92     Fields:    Translation:HumansCells
    125. Unraveling inflammatory responses using systems genetics and gene-environment interactions in macrophages. Cell. 2012 Oct 26; 151(3):658-70. Orozco LD, Bennett BJ, Farber CR, Ghazalpour A, Pan C, Che N, Wen P, Qi HX, Mutukulu A, Siemers N, Neuhaus I, Yordanova R, Gargalovic P, Pellegrini M, Kirchgessner T, Lusis AJ. PMID: 23101632; PMCID: PMC3513387.
      View in: PubMed   Mentions: 84     Fields:    Translation:AnimalsCells
    126. Insights into the mechanism of cell death induced by saporin delivered into cancer cells by an antibody fusion protein targeting the transferrin receptor 1. Toxicol In Vitro. 2013 Feb; 27(1):220-31. Daniels-Wells TR, Helguera G, Rodríguez JA, Leoh LS, Erb MA, Diamante G, Casero D, Pellegrini M, Martínez-Maza O, Penichet ML. PMID: 23085102; PMCID: PMC3513587.
      View in: PubMed   Mentions: 18     Fields:    Translation:HumansAnimalsCells
    127. New transgenic reporters identify somatosensory neuron subtypes in larval zebrafish. Dev Neurobiol. 2013 Feb; 73(2):152-67. Palanca AM, Lee SL, Yee LE, Joe-Wong C, Trinh le A, Hiroyasu E, Husain M, Fraser SE, Pellegrini M, Sagasti A. PMID: 22865660; PMCID: PMC3541445.
      View in: PubMed   Mentions: 27     Fields:    Translation:AnimalsCells
    128. Propionibacterium acnes bacteriophages display limited genetic diversity and broad killing activity against bacterial skin isolates. mBio. 2012; 3(5). Marinelli LJ, Fitz-Gibbon S, Hayes C, Bowman C, Inkeles M, Loncaric A, Russell DA, Jacobs-Sera D, Cokus S, Pellegrini M, Kim J, Miller JF, Hatfull GF, Modlin RL. PMID: 23015740; PMCID: PMC3448167.
      View in: PubMed   Mentions: 48     Fields:    Translation:HumansCells
    129. Hybrid mouse diversity panel: a panel of inbred mouse strains suitable for analysis of complex genetic traits. Mamm Genome. 2012 Oct; 23(9-10):680-92. Ghazalpour A, Rau CD, Farber CR, Bennett BJ, Orozco LD, van Nas A, Pan C, Allayee H, Beaven SW, Civelek M, Davis RC, Drake TA, Friedman RA, Furlotte N, Hui ST, Jentsch JD, Kostem E, Kang HM, Kang EY, Joo JW, Korshunov VA, Laughlin RE, Martin LJ, Ohmen JD, Parks BW, Pellegrini M, Reue K, Smith DJ, Tetradis S, Wang J, Wang Y, Weiss JN, Kirchgessner T, Gargalovic PS, Eskin E, Lusis AJ, LeBoeuf RC. PMID: 22892838; PMCID: PMC3586763.
      View in: PubMed   Mentions: 79     Fields:    Translation:Animals
    130. Scl represses cardiomyogenesis in prospective hemogenic endothelium and endocardium. Cell. 2012 Aug 03; 150(3):590-605. Van Handel B, Montel-Hagen A, Sasidharan R, Nakano H, Ferrari R, Boogerd CJ, Schredelseker J, Wang Y, Hunter S, Org T, Zhou J, Li X, Pellegrini M, Chen JN, Orkin SH, Kurdistani SK, Evans SM, Nakano A, Mikkola HK. PMID: 22863011; PMCID: PMC3624753.
      View in: PubMed   Mentions: 79     Fields:    Translation:AnimalsCells
    131. Transcriptome and methylome interactions in rice hybrids. Proc Natl Acad Sci U S A. 2012 Jul 24; 109(30):12040-5. Chodavarapu RK, Feng S, Ding B, Simon SA, Lopez D, Jia Y, Wang GL, Meyers BC, Jacobsen SE, Pellegrini M. PMID: 22778444; PMCID: PMC3409791.
      View in: PubMed   Mentions: 85     Fields:    Translation:AnimalsCells
    132. MORC family ATPases required for heterochromatin condensation and gene silencing. Science. 2012 Jun 15; 336(6087):1448-51. Moissiard G, Cokus SJ, Cary J, Feng S, Billi AC, Stroud H, Husmann D, Zhan Y, Lajoie BR, McCord RP, Hale CJ, Feng W, Michaels SD, Frand AR, Pellegrini M, Dekker J, Kim JK, Jacobsen SE. PMID: 22555433; PMCID: PMC3376212.
      View in: PubMed   Mentions: 141     Fields:    Translation:AnimalsCells
    133. Reorganization of the host epigenome by a viral oncogene. Genome Res. 2012 Jul; 22(7):1212-21. Ferrari R, Su T, Li B, Bonora G, Oberai A, Chan Y, Sasidharan R, Berk AJ, Pellegrini M, Kurdistani SK. PMID: 22499665; PMCID: PMC3396363.
      View in: PubMed   Mentions: 44     Fields:    Translation:HumansCells
    134. Epigenetic analysis: ChIP-chip and ChIP-seq. Methods Mol Biol. 2012; 802:377-87. Pellegrini M, Ferrari R. PMID: 22130894.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    135. Using phylogenetic profiles to predict functional relationships. Methods Mol Biol. 2012; 804:167-77. Pellegrini M. PMID: 22144153.
      View in: PubMed   Mentions: 15     Fields:    Translation:Cells
    136. Genome-wide binding map of the HIV-1 Tat protein to the human genome. PLoS One. 2011; 6(11):e26894. Marban C, Su T, Ferrari R, Li B, Vatakis D, Pellegrini M, Zack JA, Rohr O, Kurdistani SK. PMID: 22073215; PMCID: PMC3208564.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansCells
    137. Lethal iron deprivation induced by non-neutralizing antibodies targeting transferrin receptor 1 in malignant B cells. Leuk Lymphoma. 2011 Nov; 52(11):2169-78. Rodríguez JA, Luria-Pérez R, López-Valdés HE, Casero D, Daniels TR, Patel S, Avila D, Leuchter R, So S, Ortiz-Sánchez E, Bonavida B, Martínez-Maza O, Charles AC, Pellegrini M, Helguera G, Penichet ML. PMID: 21870996; PMCID: PMC3732792.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansAnimalsCells
    138. Algal Functional Annotation Tool: a web-based analysis suite to functionally interpret large gene lists using integrated annotation and expression data. BMC Bioinformatics. 2011 Jul 12; 12:282. Lopez D, Casero D, Cokus SJ, Merchant SS, Pellegrini M. PMID: 21749710; PMCID: PMC3144025.
      View in: PubMed   Mentions: 39     Fields:    Translation:Animals
    139. A comparative analysis of DNA methylation across human embryonic stem cell lines. Genome Biol. 2011 Jul 06; 12(7):R62. Chen PY, Feng S, Joo JW, Jacobsen SE, Pellegrini M. PMID: 21733148; PMCID: PMC3218824.
      View in: PubMed   Mentions: 49     Fields:    Translation:HumansCells
    140. Global phosphoproteomics reveals crosstalk between Bcr-Abl and negative feedback mechanisms controlling Src signaling. Sci Signal. 2011 Mar 29; 4(166):ra18. Rubbi L, Titz B, Brown L, Galvan E, Komisopoulou E, Chen SS, Low T, Tahmasian M, Skaggs B, Müschen M, Pellegrini M, Graeber TG. PMID: 21447799; PMCID: PMC4057100.
      View in: PubMed   Mentions: 30     Fields:    Translation:HumansCells
    141. A revised mineral nutrient supplement increases biomass and growth rate in Chlamydomonas reinhardtii. Plant J. 2011 Jun; 66(5):770-80. Kropat J, Hong-Hermesdorf A, Casero D, Ent P, Castruita M, Pellegrini M, Merchant SS, Malasarn D. PMID: 21309872; PMCID: PMC3101321.
      View in: PubMed   Mentions: 105     Fields:    Translation:AnimalsCells
    142. Identification of genes required for de novo DNA methylation in Arabidopsis. Epigenetics. 2011 Mar; 6(3):344-54. Greenberg MV, Ausin I, Chan SW, Cokus SJ, Cuperus JT, Feng S, Law JA, Chu C, Pellegrini M, Carrington JC, Jacobsen SE. PMID: 21150311; PMCID: PMC3092683.
      View in: PubMed   Mentions: 38     Fields:    Translation:AnimalsCells
    143. Determining DNA methylation profiles using sequencing. Methods Mol Biol. 2011; 733:223-38. Feng S, Rubbi L, Jacobsen SE, Pellegrini M. PMID: 21431774.
      View in: PubMed   Mentions: 25     Fields:    Translation:Cells
    144. Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli. Mol Syst Biol. 2010 Dec 21; 6:449. Atsumi S, Wu TY, Machado IM, Huang WC, Chen PY, Pellegrini M, Liao JC. PMID: 21179021; PMCID: PMC3018172.
      View in: PubMed   Mentions: 98     Fields:    Translation:Cells
    145. AID-induced genotoxic stress promotes B cell differentiation in the germinal center via ATM and LKB1 signaling. Mol Cell. 2010 Sep 24; 39(6):873-85. Sherman MH, Kuraishy AI, Deshpande C, Hong JS, Cacalano NA, Gatti RA, Manis JP, Damore MA, Pellegrini M, Teitell MA. PMID: 20864035; PMCID: PMC2945612.
      View in: PubMed   Mentions: 38     Fields:    Translation:HumansAnimalsCells
    146. Molecular analyses of human induced pluripotent stem cells and embryonic stem cells. Cell Stem Cell. 2010 Aug 06; 7(2):263-9. Chin MH, Pellegrini M, Plath K, Lowry WE. PMID: 20682452; PMCID: PMC3276111.
      View in: PubMed   Mentions: 73     Fields:    Translation:HumansCells
    147. Relationship between nucleosome positioning and DNA methylation. Nature. 2010 Jul 15; 466(7304):388-92. Chodavarapu RK, Feng S, Bernatavichute YV, Chen PY, Stroud H, Yu Y, Hetzel JA, Kuo F, Kim J, Cokus SJ, Casero D, Bernal M, Huijser P, Clark AT, Krämer U, Merchant SS, Zhang X, Jacobsen SE, Pellegrini M. PMID: 20512117; PMCID: PMC2964354.
      View in: PubMed   Mentions: 335     Fields:    Translation:HumansAnimalsCells
    148. BS Seeker: precise mapping for bisulfite sequencing. BMC Bioinformatics. 2010 Apr 23; 11:203. Chen PY, Cokus SJ, Pellegrini M. PMID: 20416082; PMCID: PMC2871274.
      View in: PubMed   Mentions: 119     Fields:    Translation:HumansCells
    149. Conservation and divergence of methylation patterning in plants and animals. Proc Natl Acad Sci U S A. 2010 May 11; 107(19):8689-94. Feng S, Cokus SJ, Zhang X, Chen PY, Bostick M, Goll MG, Hetzel J, Jain J, Strauss SH, Halpern ME, Ukomadu C, Sadler KC, Pradhan S, Pellegrini M, Jacobsen SE. PMID: 20395551; PMCID: PMC2889301.
      View in: PubMed   Mentions: 523     Fields:    Translation:AnimalsCells
    150. Detecting coordinated regulation of multi-protein complexes using logic analysis of gene expression. BMC Syst Biol. 2009 Dec 14; 3:115. Sprinzak E, Cokus SJ, Yeates TO, Eisenberg D, Pellegrini M. PMID: 20003439; PMCID: PMC2804736.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    151. Nonsense-mediated mRNA decay mutes the splicing defects of spliceosome component mutations. RNA. 2009 Dec; 15(12):2236-47. Kawashima T, Pellegrini M, Chanfreau GF. PMID: 19850912; PMCID: PMC2779665.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    152. Determining the conservation of DNA methylation in Arabidopsis. Epigenetics. 2009 Feb 16; 4(2):119-24. Widman N, Jacobsen SE, Pellegrini M. PMID: 19384058.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    153. Mef2C is a lineage-restricted target of Scl/Tal1 and regulates megakaryopoiesis and B-cell homeostasis. Blood. 2009 Apr 09; 113(15):3461-71. Gekas C, Rhodes KE, Gereige LM, Helgadottir H, Ferrari R, Kurdistani SK, Montecino-Rodriguez E, Bassel-Duby R, Olson E, Krivtsov AV, Armstrong S, Orkin SH, Pellegrini M, Mikkola HK. PMID: 19211936; PMCID: PMC2945827.
      View in: PubMed   Mentions: 23     Fields:    Translation:AnimalsCells
    154. Expression profile of CREB knockdown in myeloid leukemia cells. BMC Cancer. 2008 Sep 18; 8:264. Pellegrini M, Cheng JC, Voutila J, Judelson D, Taylor J, Nelson SF, Sakamoto KM. PMID: 18801183; PMCID: PMC2647550.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansCells
    155. Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana. PLoS One. 2008 Sep 08; 3(9):e3156. Bernatavichute YV, Zhang X, Cokus S, Pellegrini M, Jacobsen SE. PMID: 18776934; PMCID: PMC2522283.
      View in: PubMed   Mentions: 157     Fields:    Translation:AnimalsCells
    156. Epigenetic reprogramming by adenovirus e1a. Science. 2008 Aug 22; 321(5892):1086-8. Ferrari R, Pellegrini M, Horwitz GA, Xie W, Berk AJ, Kurdistani SK. PMID: 18719284; PMCID: PMC2693122.
      View in: PubMed   Mentions: 115     Fields:    Translation:HumansCells
    157. X-inactivation in female human embryonic stem cells is in a nonrandom pattern and prone to epigenetic alterations. Proc Natl Acad Sci U S A. 2008 Mar 25; 105(12):4709-14. Shen Y, Matsuno Y, Fouse SD, Rao N, Root S, Xu R, Pellegrini M, Riggs AD, Fan G. PMID: 18339804; PMCID: PMC2290804.
      View in: PubMed   Mentions: 100     Fields:    Translation:HumansCells
    158. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature. 2008 Mar 13; 452(7184):215-9. Cokus SJ, Feng S, Zhang X, Chen Z, Merriman B, Haudenschild CD, Pradhan S, Nelson SF, Pellegrini M, Jacobsen SE. PMID: 18278030; PMCID: PMC2377394.
      View in: PubMed   Mentions: 922     Fields:    Translation:AnimalsCells
    159. Promoter CpG methylation contributes to ES cell gene regulation in parallel with Oct4/Nanog, PcG complex, and histone H3 K4/K27 trimethylation. Cell Stem Cell. 2008 Feb 07; 2(2):160-9. Fouse SD, Shen Y, Pellegrini M, Cole S, Meissner A, Van Neste L, Jaenisch R, Fan G. PMID: 18371437; PMCID: PMC3070208.
      View in: PubMed   Mentions: 206     Fields:    Translation:AnimalsCells
    160. Modeling the regulatory network of histone acetylation in Saccharomyces cerevisiae. Mol Syst Biol. 2007; 3:153. Pham H, Ferrari R, Cokus SJ, Kurdistani SK, Pellegrini M. PMID: 18091724; PMCID: PMC2174627.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    161. Genomewide clonal analysis of lethal mutations in the Drosophila melanogaster eye: comparison of the X chromosome and autosomes. Genetics. 2007 Oct; 177(2):689-97. Call GB, Olson JM, Chen J, Villarasa N, Ngo KT, Yabroff AM, Cokus S, Pellegrini M, Bibikova E, Bui C, Cespedes A, Chan C, Chan S, Cheema AK, Chhabra A, Chitsazzadeh V, Do MT, Fang QA, Folick A, Goodstein GL, Huang CR, Hung T, Kim E, Kim W, Kim Y, Kohan E, Kuoy E, Kwak R, Lee E, Lee J, Lin H, Liu HC, Moroz T, Prasad T, Prashad SL, Patananan AN, Rangel A, Rosselli D, Sidhu S, Sitz D, Taber CE, Tan J, Topp K, Tran P, Tran QM, Unkovic M, Wells M, Wickland J, Yackle K, Yavari A, Zaretsky JM, Allen CM, Alli L, An J, Anwar A, Arevalo S, Ayoub D, Badal SS, Baghdanian A, Baghdanian AH, Baumann SA, Becerra VN, Chan HJ, Chang AE, Cheng XA, Chin M, Chong F, Crisostomo C, Datta S, Delosreyes A, Diep F, Ekanayake P, Engeln M, Evers E, Farshidi F, Fischer K, Formanes AJ, Gong J, Gupta R, Haas BE, Hahm V, Hsieh M, Hui JZ, Iao ML, Jin SD, Kim AY, Kim LS, King M, Knudsen-Robbins C, Kohanchi D, Kovshilovskaya B, Ku A, Kung RW, Landig ME, Latterman SS, Lauw SS, Lee DS, Lee JS, Lei KC, Leung LL, Lerner R, Lin JY, Lin K, Lim BC, Lui CP, Liu TQ, Luong V, Makshanoff J, Mei AC, Meza M, Mikhaeil YA, Moarefi M, Nguyen LH, Pai SS, Pandya M, Patel AR, Picard PD, Safaee MM, Salame C, Sanchez C, Sanchez N, Seifert CC, Shah A, Shilgevorkyan OH, Singh I, Soma V, Song JJ, Srivastava N, StaAna JL, Sun C, Tan D, Teruya AS, Tikia R, Tran T, Travis EG, Trinh JD, Vo D, Walsh T, Wong RS, Wu K, Wu YW, Yang NX, Yeranosian M, Yu JS, Zhou JJ, Zhu RX, Abrams A, Abramson A, Amado L, Anderson J, Bashour K, Beyer E, Bookatz A, Brewer S, Buu N, Calvillo S, Cao J, Chan A, Chan J, Chang A, Chang D, Chang Y, Chen Y, Choi J, Chou J, Dang P, Datta S, Davarifar A, Deravanesian A, Desai P, Fabrikant J, Farnad S, Fu K, Garcia E, Garrone N, Gasparyan S, Gayda P, Go S, Goffstein C, Gonzalez C, Guirguis M, Hassid R, Hermogeno B, Hong J, Hong A, Hovestreydt L, Hu C, Huff D, Jamshidian F, Jen J, Kahen K, Kao L, Kelley M, Kho T, Kim Y, Kim S, Kirkpatrick B, Langenbacher A, Laxamana S, Lee J, Lee C, Lee SY, Lee TS, Lee T, Lewis G, Lezcano S, Lin P, Luu T, Luu J, Marrs W, Marsh E, Marshall J, Min S, Minasian T, Minye H, Misra A, Morimoto M, Moshfegh Y, Murray J, Nguyen K, Nguyen C, Nodado E, O'Donahue A, Onugha N, Orjiakor N, Padhiar B, Paul E, Pavel-Dinu M, Pavlenko A, Paz E, Phaklides S, Pham L, Poulose P, Powell R, Pusic A, Ramola D, Regalia K, Ribbens M, Rifai B, Saakyan M, Saarikoski P, Segura M, Shadpour F, Shemmassian A, Singh R, Singh V, Skinner E, Solomin D, Soneji K, Spivey K, Stageberg E, Stavchanskiy M, Tekchandani L, Thai L, Thiyanaratnam J, Tong M, Toor A, Tovar S, Trangsrud K, Tsang WY, Uemura M, Vollmer E, Weiss E, Wood D, Wu J, Wu S, Wu W, Xu Q, Yamauchi Y, Yarosh W, Yee L, Yen G, Banerjee U. PMID: 17720911; PMCID: PMC2034635.
      View in: PubMed   Mentions: 23     Fields:    Translation:AnimalsCells
    162. An improved method for identifying functionally linked proteins using phylogenetic profiles. BMC Bioinformatics. 2007 May 22; 8 Suppl 4:S7. Cokus S, Mizutani S, Pellegrini M. PMID: 17570150; PMCID: PMC1892086.
      View in: PubMed   Mentions: 26     Fields:    
    163. Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis. PLoS Biol. 2007 May; 5(5):e129. Zhang X, Clarenz O, Cokus S, Bernatavichute YV, Pellegrini M, Goodrich J, Jacobsen SE. PMID: 17439305; PMCID: PMC1852588.
      View in: PubMed   Mentions: 312     Fields:    Translation:AnimalsCells
    164. Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell. 2006 Sep 22; 126(6):1189-201. Zhang X, Yazaki J, Sundaresan A, Cokus S, Chan SW, Chen H, Henderson IR, Shinn P, Pellegrini M, Jacobsen SE, Ecker JR. PMID: 16949657.
      View in: PubMed   Mentions: 752     Fields:    Translation:AnimalsCells
    165. Modelling the network of cell cycle transcription factors in the yeast Saccharomyces cerevisiae. BMC Bioinformatics. 2006 Aug 16; 7:381. Cokus S, Rose S, Haynor D, Grønbech-Jensen N, Pellegrini M. PMID: 16914048; PMCID: PMC1570153.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    166. Prolinks: a database of protein functional linkages derived from coevolution. Genome Biol. 2004; 5(5):R35. Bowers PM, Pellegrini M, Thompson MJ, Fierro J, Yeates TO, Eisenberg D. PMID: 15128449; PMCID: PMC416471.
      View in: PubMed   Mentions: 121     Fields:    Translation:Animals
    167. Visualization and interpretation of protein networks in Mycobacterium tuberculosis based on hierarchical clustering of genome-wide functional linkage maps. Nucleic Acids Res. 2003 Dec 15; 31(24):7099-109. Strong M, Graeber TG, Beeby M, Pellegrini M, Thompson MJ, Yeates TO, Eisenberg D. PMID: 14654685; PMCID: PMC291866.
      View in: PubMed   Mentions: 17     Fields:    Translation:Cells
    168. Inference of protein function and protein linkages in Mycobacterium tuberculosis based on prokaryotic genome organization: a combined computational approach. Genome Biol. 2003; 4(9):R59. Strong M, Mallick P, Pellegrini M, Thompson MJ, Eisenberg D. PMID: 12952538; PMCID: PMC193659.
      View in: PubMed   Mentions: 39     Fields:    Translation:Cells
    Matteo's Networks
    Concepts (830)
    Derived automatically from this person's publications.
    _
    Co-Authors (106)
    People in Profiles who have published with this person.
    _
    Similar People (60)
    People who share similar concepts with this person.
    _
    Same Department
    Search Department
    _