Neema Jamshidi

Title(s)Assistant Professor-in-Residence, Radiological Sciences
SchoolMedicine
vCardDownload vCard

    Collapse Overview 

    Collapse ORNG Applications 
    Collapse Clinical Trials

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Dysfunctional β-cell longevity in diabetes relies on energy conservation and positive epistasis. Life Sci Alliance. 2024 Dec; 7(12). Raval K, Jamshidi N, Seyran B, Salwinski L, Pillai R, Yang L, Ma F, Pellegrini M, Shin J, Yang X, Tudzarova S. PMID: 39313296; PMCID: PMC11420665.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    2. A Computer Vision Algorithm to Predict Superior Mesenteric Artery Margin Status for Patients with Pancreatic Ductal Adenocarcinoma. Ann Surg. 2024 Aug 23. Wang J, Ashraf Ganjouei A, Romero-Hernandez F, Foroutani L, Bahceci D, Deranteriassian A, Casey M, Li PY, Houshmand S, Behr S, Jamshidi N, Majumdar S, Donahue T, Kim GE, Wang ZJ, Thornblade LW, Adam M, Alseidi A. PMID: 39176476.
      View in: PubMed   Mentions:    Fields:    
    3. Multi-Modality, Multi-Dimensional Characterization of Pediatric Non-Alcoholic Fatty Liver Disease. Metabolites. 2023 Aug 08; 13(8). Jamshidi N, Feizi A, Sirlin CB, Lavine JE, Kuo MD. PMID: 37623872; PMCID: PMC10456937.
      View in: PubMed   Mentions: 1  
    4. Loss of the Kidney Urate Transporter, Urat1, Leads to Disrupted Redox Homeostasis in Mice. Antioxidants (Basel). 2023 Mar 22; 12(3). Jamshidi N, Nigam KB, Nigam SK. PMID: 36979028; PMCID: PMC10045411.
      View in: PubMed   Mentions: 2  
    5. Construction of a radiogenomic association map of pancreatic ductal adenocarcinoma. BMC Cancer. 2023 Feb 27; 23(1):189. Jamshidi N, Senthilvelan J, Dawson DW, Donahue TR, Kuo MD. PMID: 36843111; PMCID: PMC9969670.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    6. Drug transporters OAT1 and OAT3 have specific effects on multiple organs and gut microbiome as revealed by contextualized metabolic network reconstructions. Sci Rep. 2022 10 31; 12(1):18308. Jamshidi N, Nigam SK. PMID: 36316339; PMCID: PMC9622871.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    7. AHR is a master regulator of diverse pathways in endogenous metabolism. Sci Rep. 2022 10 05; 12(1):16625. Granados JC, Falah K, Koo I, Morgan EW, Perdew GH, Patterson AD, Jamshidi N, Nigam SK. PMID: 36198709; PMCID: PMC9534852.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimals
    8. A pipeline for automated deep learning liver segmentation (PADLLS) from contrast enhanced CT exams. Sci Rep. 2022 09 22; 12(1):15794. Senthilvelan J, Jamshidi N. PMID: 36138084; PMCID: PMC9500060.
      View in: PubMed   Mentions: 4     Fields:    
    9. Looking beyond the gunsight: A potential bailout technique for arterial and venous recanalization. Diagn Interv Radiol. 2022 May; 28(3):260-263. Kao SD, Srinivasa RN, Callese T, Jamshidi N, Plotnik A. PMID: 35748210; PMCID: PMC9634927.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    10. Mechanical thrombectomy of COVID-19 DVT with congenital heart disease leading to phlegmasia cerulea dolens: a case report. BMC Cardiovasc Disord. 2021 12 09; 21(1):592. Jamshidi N, Tan W, Foote D, Reardon L, Lluri G, Aboulhosn J, Moriarty J, Lin J. PMID: 34886795; PMCID: PMC8655716.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    11. Tissue clearing techniques for three-dimensional optical imaging of intact human prostate and correlations with multi-parametric MRI. Prostate. 2021 Dec; 81(16):1450. Cipollari S, Jamshidi N, Du L, Sung K, Huang D, Margolis DJ, Huang J, Reiter RE, Kuo MD. PMID: 34591333.
      View in: PubMed   Mentions:    Fields:    
    12. Tissue clearing techniques for three-dimensional optical imaging of intact human prostate and correlations with multi-parametric MRI. Prostate. 2021 06; 81(9):521-529. Cipollari S, Jamshidi N, Du L, Sung K, Huang D, Margolis DJ, Huang J, Reiter RE, Kuo MD. PMID: 33876838; PMCID: PMC9014804.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    13. A key role for the transporter OAT1 in systemic lipid metabolism. J Biol Chem. 2021 Jan-Jun; 296:100603. Granados JC, Nigam AK, Bush KT, Jamshidi N, Nigam SK. PMID: 33785360; PMCID: PMC8102404.
      View in: PubMed   Mentions: 15     Fields:    Translation:Animals
    14. Inhibition of mitochondrial complex II in neuronal cells triggers unique pathways culminating in autophagy with implications for neurodegeneration. Sci Rep. 2021 01 15; 11(1):1483. Ranganayaki S, Jamshidi N, Aiyaz M, Rashmi SK, Gayathri N, Harsha PK, Padmanabhan B, Srinivas Bharath MM. PMID: 33452321; PMCID: PMC7810707.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    15. Inline balloon-assisted vascular sheath fragment removal. CVIR Endovasc. 2020 Oct 04; 3(1):53. Jamshidi N, Chiang J. PMID: 32886241; PMCID: PMC7474008.
      View in: PubMed   Mentions: 3  
    16. Metabolome Changes during In Vivo Red Cell Aging Reveal Disruption of Key Metabolic Pathways. iScience. 2020 Oct 23; 23(10):101630. Jamshidi N, Xu X, von Löhneysen K, Soldau K, Mohney RP, Karoly ED, Scott M, Friedman JS. PMID: 33103072; PMCID: PMC7575880.
      View in: PubMed   Mentions: 7  
    17. Transcatheter Embolization of Renal-Splenic Shunt to Treat Hematemesis. Cardiovasc Intervent Radiol. 2020 Nov; 43(11):1708-1711. Jamshidi N, Kee ST. PMID: 32710128; PMCID: PMC9400816.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    18. PK Papyrus Coronary Stent for the Treatment of Diminutive and Tortuous Visceral Artery Pseudoaneurysms. Cardiovasc Intervent Radiol. 2020 07; 43(7):1097-1098. Jamshidi N. PMID: 32133552.
      View in: PubMed   Mentions:    Fields:    
    19. Correction: Evaluation of the predictive ability of ultrasound-based assessment of breast cancer using BI-RADS natural language reporting against commercial transcriptome-based tests. PLoS One. 2020; 15(2):e0229584. Jamshidi N, Chang J, Mock K, Nguyen B, Dauphine C, Kuo MD. PMID: 32074137; PMCID: PMC7029870.
      View in: PubMed   Mentions:    Fields:    
    20. Insights into Dynamic Network States Using Metabolomic Data. Methods Mol Biol. 2019; 1978:243-258. Mostolizadeh R, Dräger A, Jamshidi N. PMID: 31119667.
      View in: PubMed   Mentions: 1     Fields:    
    21. Radiomics and radiogenomics of primary liver cancers. Clin Mol Hepatol. 2019 03; 25(1):21-29. Jeong WK, Jamshidi N, Felker ER, Raman SS, Lu DS. PMID: 30441889; PMCID: PMC6435966.
      View in: PubMed   Mentions: 38     Fields:    Translation:Humans
    22. Receptor-based Surrogate Subtypes and Discrepancies with Breast Cancer Intrinsic Subtypes: Implications for Image Biomarker Development. Radiology. 2018 10; 289(1):210-217. Jamshidi N, Yamamoto S, Gornbein J, Kuo MD. PMID: 30040052.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    23. Functional interrogation of Plasmodium genus metabolism identifies species- and stage-specific differences in nutrient essentiality and drug targeting. PLoS Comput Biol. 2018 01; 14(1):e1005895. Abdel-Haleem AM, Hefzi H, Mineta K, Gao X, Gojobori T, Palsson BO, Lewis NE, Jamshidi N. PMID: 29300748; PMCID: PMC5771636.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansAnimalsCells
    24. Integrated Host-Pathogen Metabolic Reconstructions. Methods Mol Biol. 2018; 1716:197-217. Raghunathan A, Jamshidi N. PMID: 29222755.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    25. The Emerging Facets of Non-Cancerous Warburg Effect. Front Endocrinol (Lausanne). 2017; 8:279. Abdel-Haleem AM, Lewis NE, Jamshidi N, Mineta K, Gao X, Gojobori T. PMID: 29109698; PMCID: PMC5660072.
      View in: PubMed   Mentions: 38     Fields:    
    26. Multiregional Radiogenomic Assessment of Prostate Microenvironments with Multiparametric MR Imaging and DNA Whole-Exome Sequencing of Prostate Glands with Adenocarcinoma. Radiology. 2017 07; 284(1):109-119. Jamshidi N, Margolis DJ, Raman S, Huang J, Reiter RE, Kuo MD. PMID: 28453432; PMCID: PMC6197054.
      View in: PubMed   Mentions: 16     Fields:    Translation:Humans
    27. Quality of Radiomic Features in Glioblastoma Multiforme: Impact of Semi-Automated Tumor Segmentation Software. Korean J Radiol. 2017 May-Jun; 18(3):498-509. Lee M, Woo B, Kuo MD, Jamshidi N, Kim JH. PMID: 28458602; PMCID: PMC5390619.
      View in: PubMed   Mentions: 16     Fields:    Translation:Humans
    28. Systems biology analysis of drivers underlying hallmarks of cancer cell metabolism. Sci Rep. 2017 01 25; 7:41241. Zielinski DC, Jamshidi N, Corbett AJ, Bordbar A, Thomas A, Palsson BO. PMID: 28120890; PMCID: PMC5264163.
      View in: PubMed   Mentions: 55     Fields:    Translation:HumansCells
    29. Genomic Adequacy from Solid Tumor Core Needle Biopsies of ex Vivo Tissue and in Vivo Lung Masses: Prospective Study. Radiology. 2017 03; 282(3):903-912. Jamshidi N, Huang D, Abtin FG, Loh CT, Kee ST, Suh RD, Yamamoto S, Das K, Dry S, Binder S, Enzmann DR, Kuo MD. PMID: 27755912.
      View in: PubMed   Mentions: 16     Fields:    Translation:Humans
    30. An Organic Anion Transporter 1 (OAT1)-centered Metabolic Network. J Biol Chem. 2016 09 09; 291(37):19474-86. Liu HC, Jamshidi N, Chen Y, Eraly SA, Cho SY, Bhatnagar V, Wu W, Bush KT, Abagyan R, Palsson BO, Nigam SK. PMID: 27440044; PMCID: PMC5016685.
      View in: PubMed   Mentions: 25     Fields:    Translation:Animals
    31. Transcriptome profiling reveals novel gene expression signatures and regulating transcription factors of TGFβ-induced epithelial-to-mesenchymal transition. Cancer Med. 2016 08; 5(8):1962-72. Du L, Yamamoto S, Burnette BL, Huang D, Gao K, Jamshidi N, Kuo MD. PMID: 27318801; PMCID: PMC4971924.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
    32. Radiogenomic Analysis Demonstrates Associations between (18)F-Fluoro-2-Deoxyglucose PET, Prognosis, and Epithelial-Mesenchymal Transition in Non-Small Cell Lung Cancer. Radiology. 2016 07; 280(1):261-70. Yamamoto S, Huang D, Du L, Korn RL, Jamshidi N, Burnette BL, Kuo MD. PMID: 27082783.
      View in: PubMed   Mentions: 18     Fields:    Translation:Humans
    33. The radiogenomic risk score stratifies outcomes in a renal cell cancer phase 2 clinical trial. Eur Radiol. 2016 Aug; 26(8):2798-807. Jamshidi N, Jonasch E, Zapala M, Korn RL, Brooks JD, Ljungberg B, Kuo MD. PMID: 26560727.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansCTClinical Trials
    34. Personalized Whole-Cell Kinetic Models of Metabolism for Discovery in Genomics and Pharmacodynamics. Cell Syst. 2015 Oct 28; 1(4):283-92. Bordbar A, McCloskey D, Zielinski DC, Sonnenschein N, Jamshidi N, Palsson BO. PMID: 27136057.
      View in: PubMed   Mentions: 49     Fields:    
    35. Do genome-scale models need exact solvers or clearer standards? Mol Syst Biol. 2015 Oct 14; 11(10):831. Ebrahim A, Almaas E, Bauer E, Bordbar A, Burgard AP, Chang RL, Dräger A, Famili I, Feist AM, Fleming RM, Fong SS, Hatzimanikatis V, Herrgård MJ, Holder A, Hucka M, Hyduke D, Jamshidi N, Lee SY, Le Novère N, Lerman JA, Lewis NE, Ma D, Mahadevan R, Maranas C, Nagarajan H, Navid A, Nielsen J, Nielsen LK, Nogales J, Noronha A, Pal C, Palsson BO, Papin JA, Patil KR, Price ND, Reed JL, Saunders M, Senger RS, Sonnenschein N, Sun Y, Thiele I. PMID: 26467284; PMCID: PMC4631202.
      View in: PubMed   Mentions: 33     Fields:    
    36. Cell scale host-pathogen modeling: another branch in the evolution of constraint-based methods. Front Microbiol. 2015; 6:1032. Jamshidi N, Raghunathan A. PMID: 26500611; PMCID: PMC4594423.
      View in: PubMed   Mentions: 9  
    37. Transcriptome-based reconstructions from the murine knockout suggest involvement of the urate transporter, URAT1 (slc22a12), in novel metabolic pathways. Biochem Biophys Rep. 2015 Sep 01; 3:51-61. Eraly SA, Liu HC, Jamshidi N, Nigam SK. PMID: 26251846; PMCID: PMC4522937.
      View in: PubMed   Mentions: 7  
    38. Systems analysis of host-parasite interactions. Wiley Interdiscip Rev Syst Biol Med. 2015 Nov-Dec; 7(6):381-400. Swann J, Jamshidi N, Lewis NE, Winzeler EA. PMID: 26306749; PMCID: PMC4679367.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansAnimals
    39. The Radiogenomic Risk Score: Construction of a Prognostic Quantitative, Noninvasive Image-based Molecular Assay for Renal Cell Carcinoma. Radiology. 2015 Oct; 277(1):114-23. Jamshidi N, Jonasch E, Zapala M, Korn RL, Aganovic L, Zhao H, Tumkur Sitaram R, Tibshirani RJ, Banerjee S, Brooks JD, Ljungberg B, Kuo MD. PMID: 26402495.
      View in: PubMed   Mentions: 34     Fields:    Translation:Humans
    40. Breast Cancer: Radiogenomic Biomarker Reveals Associations among Dynamic Contrast-enhanced MR Imaging, Long Noncoding RNA, and Metastasis. Radiology. 2015 May; 275(2):384-92. Yamamoto S, Han W, Kim Y, Du L, Jamshidi N, Huang D, Kim JH, Kuo MD. PMID: 25734557.
      View in: PubMed   Mentions: 57     Fields:    Translation:Humans
    41. Behind the numbers: Decoding molecular phenotypes with radiogenomics--guiding principles and technical considerations. Radiology. 2014 Feb; 270(2):320-5. Kuo MD, Jamshidi N. PMID: 24471381.
      View in: PubMed   Mentions: 105     Fields:    Translation:Humans
    42. Network reconstruction of platelet metabolism identifies metabolic signature for aspirin resistance. Sci Rep. 2014 Jan 29; 4:3925. Thomas A, Rahmanian S, Bordbar A, Palsson BØ, Jamshidi N. PMID: 24473230; PMCID: PMC3905279.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansCells
    43. Illuminating radiogenomic characteristics of glioblastoma multiforme through integration of MR imaging, messenger RNA expression, and DNA copy number variation. Radiology. 2014 Jan; 270(1):1-2. Jamshidi N, Diehn M, Bredel M, Kuo MD. PMID: 24056404; PMCID: PMC6481936.
      View in: PubMed   Mentions: 69     Fields:    Translation:Humans
    44. Multispecific drug transporter Slc22a8 (Oat3) regulates multiple metabolic and signaling pathways. Drug Metab Dispos. 2013 Oct; 41(10):1825-34. Wu W, Jamshidi N, Eraly SA, Liu HC, Bush KT, Palsson BO, Nigam SK. PMID: 23920220; PMCID: PMC3781372.
      View in: PubMed   Mentions: 41     Fields:    Translation:AnimalsCells
    45. A community-driven global reconstruction of human metabolism. Nat Biotechnol. 2013 May; 31(5):419-25. Thiele I, Swainston N, Fleming RM, Hoppe A, Sahoo S, Aurich MK, Haraldsdottir H, Mo ML, Rolfsson O, Stobbe MD, Thorleifsson SG, Agren R, Bölling C, Bordel S, Chavali AK, Dobson P, Dunn WB, Endler L, Hala D, Hucka M, Hull D, Jameson D, Jamshidi N, Jonsson JJ, Juty N, Keating S, Nookaew I, Le Novère N, Malys N, Mazein A, Papin JA, Price ND, Selkov E, Sigurdsson MI, Simeonidis E, Sonnenschein N, Smallbone K, Sorokin A, van Beek JH, Weichart D, Goryanin I, Nielsen J, Westerhoff HV, Kell DB, Mendes P, Palsson BØ. PMID: 23455439; PMCID: PMC3856361.
      View in: PubMed   Mentions: 484     Fields:    Translation:Humans
    46. Updating and curating metabolic pathways of TB. Tuberculosis (Edinb). 2013 Jan; 93(1):47-59. Slayden RA, Jackson M, Zucker J, Ramirez MV, Dawson CC, Crew R, Sampson NS, Thomas ST, Jamshidi N, Sisk P, Caspi R, Crick DC, McNeil MR, Pavelka MS, Niederweis M, Siroy A, Dona V, McFadden J, Boshoff H, Lew JM. PMID: 23375378; PMCID: PMC4121119.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansCells
    47. Parameter optimization for quantitative signal-concentration mapping using spoiled gradient echo MRI. Radiol Res Pract. 2012; 2012:815729. Hathout G, Jamshidi N. PMID: 23213523; PMCID: PMC3503446.
      View in: PubMed   Mentions: 2  
    48. Individualized therapy of HHT driven by network analysis of metabolomic profiles. BMC Syst Biol. 2011 Dec 20; 5:200. Jamshidi N, Miller FJ, Mandel J, Evans T, Kuo MD. PMID: 22185482; PMCID: PMC3339509.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    49. iAB-RBC-283: A proteomically derived knowledge-base of erythrocyte metabolism that can be used to simulate its physiological and patho-physiological states. BMC Syst Biol. 2011 Jul 12; 5:110. Bordbar A, Jamshidi N, Palsson BO. PMID: 21749716; PMCID: PMC3158119.
      View in: PubMed   Mentions: 51     Fields:    Translation:HumansCells
    50. Linkage of organic anion transporter-1 to metabolic pathways through integrated "omics"-driven network and functional analysis. J Biol Chem. 2011 Sep 09; 286(36):31522-31. Ahn SY, Jamshidi N, Mo ML, Wu W, Eraly SA, Dnyanmote A, Bush KT, Gallegos TF, Sweet DH, Palsson BØ, Nigam SK. PMID: 21757732; PMCID: PMC3173137.
      View in: PubMed   Mentions: 36     Fields:    Translation:HumansAnimalsCells
    51. A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1. BMC Syst Biol. 2010 Oct 19; 4:140. Sigurdsson MI, Jamshidi N, Steingrimsson E, Thiele I, Palsson BØ. PMID: 20959003; PMCID: PMC2978158.
      View in: PubMed   Mentions: 80     Fields:    Translation:HumansAnimals
    52. Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions. Mol Syst Biol. 2010 Oct 19; 6:422. Bordbar A, Lewis NE, Schellenberger J, Palsson BØ, Jamshidi N. PMID: 20959820; PMCID: PMC2990636.
      View in: PubMed   Mentions: 137     Fields:    Translation:HumansCells
    53. Assessment of metabolic phenotypes in patients with non-ischemic dilated cardiomyopathy undergoing cardiac resynchronization therapy. J Cardiovasc Transl Res. 2010 Dec; 3(6):643-51. Obrzut S, Tiongson J, Jamshidi N, Phan HM, Hoh C, Birgersdotter-Green U. PMID: 20842468; PMCID: PMC2993897.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    54. Imaging and modeling of myocardial metabolism. J Cardiovasc Transl Res. 2010 Aug; 3(4):384-96. Obrzut S, Jamshidi N, Karimi A, Birgersdotter-Green U, Hoh C. PMID: 20559785; PMCID: PMC2899022.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    55. Mass action stoichiometric simulation models: incorporating kinetics and regulation into stoichiometric models. Biophys J. 2010 Jan 20; 98(2):175-85. Jamshidi N, Palsson BØ. PMID: 20338839; PMCID: PMC2808481.
      View in: PubMed   Mentions: 41     Fields:    Translation:HumansCells
    56. Nutritional systems biology modeling: from molecular mechanisms to physiology. PLoS Comput Biol. 2009 Nov; 5(11):e1000554. de Graaf AA, Freidig AP, De Roos B, Jamshidi N, Heinemann M, Rullmann JA, Hall KD, Adiels M, van Ommen B. PMID: 19956660; PMCID: PMC2777333.
      View in: PubMed   Mentions: 30     Fields:    Translation:HumansAnimals
    57. Flux-concentration duality in dynamic nonequilibrium biological networks. Biophys J. 2009 Sep 02; 97(5):L11-3. Jamshidi N, Palsson BØ. PMID: 19720010; PMCID: PMC2749767.
      View in: PubMed   Mentions: 5     Fields:    
    58. Using in silico models to simulate dual perturbation experiments: procedure development and interpretation of outcomes. BMC Syst Biol. 2009 Apr 30; 3:44. Jamshidi N, Palsson BO. PMID: 19405968; PMCID: PMC2689188.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    59. Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization. PLoS Comput Biol. 2009 Mar; 5(3):e1000312. Thiele I, Jamshidi N, Fleming RM, Palsson BØ. PMID: 19282977; PMCID: PMC2648898.
      View in: PubMed   Mentions: 90     Fields:    Translation:Cells
    60. Identification of potential pathway mediation targets in Toll-like receptor signaling. PLoS Comput Biol. 2009 Feb; 5(2):e1000292. Li F, Thiele I, Jamshidi N, Palsson BØ. PMID: 19229310; PMCID: PMC2634968.
      View in: PubMed   Mentions: 32     Fields:    Translation:HumansCells
    61. Genome-scale network analysis of imprinted human metabolic genes. Epigenetics. 2009 Jan; 4(1):43-6. Sigurdsson MI, Jamshidi N, Jonsson JJ, Palsson BO. PMID: 19218833.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    62. Top-down analysis of temporal hierarchy in biochemical reaction networks. PLoS Comput Biol. 2008 Sep 12; 4(9):e1000177. Jamshidi N, Palsson BØ. PMID: 18787685; PMCID: PMC2518853.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansAnimalsCells
    63. Formulating genome-scale kinetic models in the post-genome era. Mol Syst Biol. 2008; 4:171. Jamshidi N, Palsson BØ. PMID: 18319723; PMCID: PMC2290940.
      View in: PubMed   Mentions: 50     Fields:    Translation:Cells
    64. A genome-scale, constraint-based approach to systems biology of human metabolism. Mol Biosyst. 2007 Sep; 3(9):598-603. Mo ML, Jamshidi N, Palsson BØ. PMID: 17700859.
      View in: PubMed   Mentions: 23     Fields:    Translation:Humans
    65. Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ661 and proposing alternative drug targets. BMC Syst Biol. 2007 Jun 08; 1:26. Jamshidi N, Palsson BØ. PMID: 17555602; PMCID: PMC1925256.
      View in: PubMed   Mentions: 129     Fields:    Translation:Cells
    66. Global reconstruction of the human metabolic network based on genomic and bibliomic data. Proc Natl Acad Sci U S A. 2007 Feb 06; 104(6):1777-82. Duarte NC, Becker SA, Jamshidi N, Thiele I, Mo ML, Vo TD, Srivas R, Palsson BØ. PMID: 17267599; PMCID: PMC1794290.
      View in: PubMed   Mentions: 594     Fields:    Translation:Humans
    67. In silico analysis of SNPs and other high-throughput data. Methods Mol Biol. 2007; 366:267-85. Jamshidi N, Vo TD, Palsson BO. PMID: 17568130.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    68. Systems biology of SNPs. Mol Syst Biol. 2006; 2:38. Jamshidi N, Palsson BØ. PMID: 16820779; PMCID: PMC1681509.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansCells
    69. Systems biology of the human red blood cell. Blood Cells Mol Dis. 2006 Mar-Apr; 36(2):239-47. Jamshidi N, Palsson BØ. PMID: 16533612.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansCells
    70. The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res. 2005; 33(17):5691-702. Overbeek R, Begley T, Butler RM, Choudhuri JV, Chuang HY, Cohoon M, de Crécy-Lagard V, Diaz N, Disz T, Edwards R, Fonstein M, Frank ED, Gerdes S, Glass EM, Goesmann A, Hanson A, Iwata-Reuyl D, Jensen R, Jamshidi N, Krause L, Kubal M, Larsen N, Linke B, McHardy AC, Meyer F, Neuweger H, Olsen G, Olson R, Osterman A, Portnoy V, Pusch GD, Rodionov DA, Rückert C, Steiner J, Stevens R, Thiele I, Vassieva O, Ye Y, Zagnitko O, Vonstein V. PMID: 16214803; PMCID: PMC1251668.
      View in: PubMed   Mentions: 1044     Fields:    
    71. In silico model-driven assessment of the effects of single nucleotide polymorphisms (SNPs) on human red blood cell metabolism. Genome Res. 2002 Nov; 12(11):1687-92. Jamshidi N, Wiback SJ, Palsson B BØ. PMID: 12421755; PMCID: PMC187553.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansCells
    72. Description and analysis of metabolic connectivity and dynamics in the human red blood cell. Biophys J. 2002 Aug; 83(2):646-62. Kauffman KJ, Pajerowski JD, Jamshidi N, Palsson BO, Edwards JS. PMID: 12124254; PMCID: PMC1302176.
      View in: PubMed   Mentions: 18     Fields:    Translation:HumansCells
    73. Microelectronic array devices and techniques for electric field enhanced DNA hybridization in low-conductance buffers. Electrophoresis. 2002 May; 23(10):1543-50. Gurtner C, Tu E, Jamshidi N, Haigis RW, Onofrey TJ, Edman CF, Sosnowski R, Wallace B, Heller MJ. PMID: 12116167.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    74. Dynamic simulation of the human red blood cell metabolic network. Bioinformatics. 2001 Mar; 17(3):286-7. Jamshidi N, Edwards JS, Fahland T, Church GM, Palsson BO. PMID: 11294796.
      View in: PubMed   Mentions: 31     Fields:    Translation:HumansCells
    75. Enhanced DNA fragmentation in the thymus of spontaneously hypertensive rats. Am J Physiol. 1999 06; 276(6):H2135-40. Suzuki H, Delano FA, Jamshidi N, Katz D, Mori M, Kosaki K, Gottlieb RA, Ishii H, Schmid-Schönbein GW. PMID: 10362697.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    76. Xanthine oxidase activity associated with arterial blood pressure in spontaneously hypertensive rats. Proc Natl Acad Sci U S A. 1998 Apr 14; 95(8):4754-9. Suzuki H, DeLano FA, Parks DA, Jamshidi N, Granger DN, Ishii H, Suematsu M, Zweifach BW, Schmid-Schönbein GW. PMID: 9539811; PMCID: PMC22563.
      View in: PubMed   Mentions: 53     Fields:    Translation:Animals
    Neema's Networks
    Concepts (341)
    Derived automatically from this person's publications.
    Explore
    _
    Co-Authors (45)
    People in Profiles who have published with this person.
    Explore
    _
    Similar People (60)
    People who share similar concepts with this person.
    Explore
    _
    Same Department
    Search Department
    _

    UCLA Profiles is managed by the UCSF Clinical and Translational Science Institute (CTSI), part of the Clinical and Translational Science Award program funded by the National Center for Advancing Translational Sciences (Grant Number UL1 TR000004) at the National Institutes of Health (NIH).
    This site is running Profiles RNS version UCSF-v3.1.0-6-g69de2244 on PROFILES-PWEB03. We use cookies to operate our website. We also use cookies to analyze our site’s performance and improve your experience on our site. For more information about how we use cookies, please see our Website Terms of Use.

    Copyright © The Regents of the University of California