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Neema Jamshidi

Title(s)Assistant Professor-in-Residence, Radiological Sciences
SchoolMedicine
Address757 Westwood Boulevard 1633 B1
Los Angeles CA 90024
Phone41411
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Inline balloon-assisted vascular sheath fragment removal. CVIR Endovasc. 2020 Oct 04; 3(1):53. Jamshidi N, Chiang J. PMID: 32886241.
      View in: PubMed   Mentions:
    2. Transcatheter Embolization of Renal-Splenic Shunt to Treat Hematemesis. Cardiovasc Intervent Radiol. 2020 Jul 24. Jamshidi N, Kee ST. PMID: 32710128.
      View in: PubMed   Mentions:    Fields:    
    3. PK Papyrus Coronary Stent for the Treatment of Diminutive and Tortuous Visceral Artery Pseudoaneurysms. Cardiovasc Intervent Radiol. 2020 Jul; 43(7):1097-1098. Jamshidi N. PMID: 32133552.
      View in: PubMed   Mentions:    Fields:    
    4. Correction: Evaluation of the predictive ability of ultrasound-based assessment of breast cancer using BI-RADS natural language reporting against commercial transcriptome-based tests. PLoS One. 2020; 15(2):e0229584. Jamshidi N, Chang J, Mock K, Nguyen B, Dauphine C, Kuo MD. PMID: 32074137.
      View in: PubMed   Mentions:    Fields:    
    5. Insights into Dynamic Network States Using Metabolomic Data. Methods Mol Biol. 2019; 1978:243-258. Mostolizadeh R, Dräger A, Jamshidi N. PMID: 31119667.
      View in: PubMed   Mentions:    Fields:    
    6. Radiomics and radiogenomics of primary liver cancers. Clin Mol Hepatol. 2019 03; 25(1):21-29. Jeong WK, Jamshidi N, Felker ER, Raman SS, Lu DS. PMID: 30441889.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    7. Receptor-based Surrogate Subtypes and Discrepancies with Breast Cancer Intrinsic Subtypes: Implications for Image Biomarker Development. Radiology. 2018 10; 289(1):210-217. Jamshidi N, Yamamoto S, Gornbein J, Kuo MD. PMID: 30040052.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    8. Functional interrogation of Plasmodium genus metabolism identifies species- and stage-specific differences in nutrient essentiality and drug targeting. PLoS Comput Biol. 2018 01; 14(1):e1005895. Abdel-Haleem AM, Hefzi H, Mineta K, Gao X, Gojobori T, Palsson BO, Lewis NE, Jamshidi N. PMID: 29300748.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    9. Integrated Host-Pathogen Metabolic Reconstructions. Methods Mol Biol. 2018; 1716:197-217. Raghunathan A, Jamshidi N. PMID: 29222755.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    10. The Emerging Facets of Non-Cancerous Warburg Effect. Front Endocrinol (Lausanne). 2017; 8:279. Abdel-Haleem AM, Lewis NE, Jamshidi N, Mineta K, Gao X, Gojobori T. PMID: 29109698.
      View in: PubMed   Mentions:
    11. Multiregional Radiogenomic Assessment of Prostate Microenvironments with Multiparametric MR Imaging and DNA Whole-Exome Sequencing of Prostate Glands with Adenocarcinoma. Radiology. 2017 07; 284(1):109-119. Jamshidi N, Margolis DJ, Raman S, Huang J, Reiter RE, Kuo MD. PMID: 28453432.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    12. Quality of Radiomic Features in Glioblastoma Multiforme: Impact of Semi-Automated Tumor Segmentation Software. Korean J Radiol. 2017 May-Jun; 18(3):498-509. Lee M, Woo B, Kuo MD, Jamshidi N, Kim JH. PMID: 28458602.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    13. Systems biology analysis of drivers underlying hallmarks of cancer cell metabolism. Sci Rep. 2017 01 25; 7:41241. Zielinski DC, Jamshidi N, Corbett AJ, Bordbar A, Thomas A, Palsson BO. PMID: 28120890.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    14. Genomic Adequacy from Solid Tumor Core Needle Biopsies of ex Vivo Tissue and in Vivo Lung Masses: Prospective Study. Radiology. 2017 03; 282(3):903-912. Jamshidi N, Huang D, Abtin FG, Loh CT, Kee ST, Suh RD, Yamamoto S, Das K, Dry S, Binder S, Enzmann DR, Kuo MD. PMID: 27755912.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    15. An Organic Anion Transporter 1 (OAT1)-centered Metabolic Network. J Biol Chem. 2016 09 09; 291(37):19474-86. Liu HC, Jamshidi N, Chen Y, Eraly SA, Cho SY, Bhatnagar V, Wu W, Bush KT, Abagyan R, Palsson BO, Nigam SK. PMID: 27440044.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    16. Transcriptome profiling reveals novel gene expression signatures and regulating transcription factors of TGFß-induced epithelial-to-mesenchymal transition. Cancer Med. 2016 08; 5(8):1962-72. Du L, Yamamoto S, Burnette BL, Huang D, Gao K, Jamshidi N, Kuo MD. PMID: 27318801.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    17. Radiogenomic Analysis Demonstrates Associations between (18)F-Fluoro-2-Deoxyglucose PET, Prognosis, and Epithelial-Mesenchymal Transition in Non-Small Cell Lung Cancer. Radiology. 2016 07; 280(1):261-70. Yamamoto S, Huang D, Du L, Korn RL, Jamshidi N, Burnette BL, Kuo MD. PMID: 27082783.
      View in: PubMed   Mentions: 13     Fields:    Translation:Humans
    18. The radiogenomic risk score stratifies outcomes in a renal cell cancer phase 2 clinical trial. Eur Radiol. 2016 Aug; 26(8):2798-807. Jamshidi N, Jonasch E, Zapala M, Korn RL, Brooks JD, Ljungberg B, Kuo MD. PMID: 26560727.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCTClinical Trials
    19. Personalized Whole-Cell Kinetic Models of Metabolism for Discovery in Genomics and Pharmacodynamics. Cell Syst. 2015 Oct 28; 1(4):283-92. Bordbar A, McCloskey D, Zielinski DC, Sonnenschein N, Jamshidi N, Palsson BO. PMID: 27136057.
      View in: PubMed   Mentions: 23     Fields:    
    20. Do genome-scale models need exact solvers or clearer standards? Mol Syst Biol. 2015 Oct 14; 11(10):831. Ebrahim A, Almaas E, Bauer E, Bordbar A, Burgard AP, Chang RL, Dräger A, Famili I, Feist AM, Fleming RM, Fong SS, Hatzimanikatis V, Herrgård MJ, Holder A, Hucka M, Hyduke D, Jamshidi N, Lee SY, Le Novère N, Lerman JA, Lewis NE, Ma D, Mahadevan R, Maranas C, Nagarajan H, Navid A, Nielsen J, Nielsen LK, Nogales J, Noronha A, Pal C, Palsson BO, Papin JA, Patil KR, Price ND, Reed JL, Saunders M, Senger RS, Sonnenschein N, Sun Y, Thiele I. PMID: 26467284.
      View in: PubMed   Mentions: 10     Fields:    
    21. Cell scale host-pathogen modeling: another branch in the evolution of constraint-based methods. Front Microbiol. 2015; 6:1032. Jamshidi N, Raghunathan A. PMID: 26500611.
      View in: PubMed   Mentions:
    22. Transcriptome-based reconstructions from the murine knockout suggest involvement of the urate transporter, URAT1 (slc22a12), in novel metabolic pathways. Biochem Biophys Rep. 2015 Sep 01; 3:51-61. Eraly SA, Liu HC, Jamshidi N, Nigam SK. PMID: 26251846.
      View in: PubMed   Mentions:
    23. Systems analysis of host-parasite interactions. Wiley Interdiscip Rev Syst Biol Med. 2015 Nov-Dec; 7(6):381-400. Swann J, Jamshidi N, Lewis NE, Winzeler EA. PMID: 26306749.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimals
    24. The Radiogenomic Risk Score: Construction of a Prognostic Quantitative, Noninvasive Image-based Molecular Assay for Renal Cell Carcinoma. Radiology. 2015 Oct; 277(1):114-23. Jamshidi N, Jonasch E, Zapala M, Korn RL, Aganovic L, Zhao H, Tumkur Sitaram R, Tibshirani RJ, Banerjee S, Brooks JD, Ljungberg B, Kuo MD. PMID: 26402495.
      View in: PubMed   Mentions: 13     Fields:    Translation:Humans
    25. Breast Cancer: Radiogenomic Biomarker Reveals Associations among Dynamic Contrast-enhanced MR Imaging, Long Noncoding RNA, and Metastasis. Radiology. 2015 May; 275(2):384-92. Yamamoto S, Han W, Kim Y, Du L, Jamshidi N, Huang D, Kim JH, Kuo MD. PMID: 25734557.
      View in: PubMed   Mentions: 38     Fields:    Translation:Humans
    26. Behind the numbers: Decoding molecular phenotypes with radiogenomics--guiding principles and technical considerations. Radiology. 2014 Feb; 270(2):320-5. Kuo MD, Jamshidi N. PMID: 24471381.
      View in: PubMed   Mentions: 43     Fields:    Translation:Humans
    27. Network reconstruction of platelet metabolism identifies metabolic signature for aspirin resistance. Sci Rep. 2014 Jan 29; 4:3925. Thomas A, Rahmanian S, Bordbar A, Palsson BØ, Jamshidi N. PMID: 24473230.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    28. Illuminating radiogenomic characteristics of glioblastoma multiforme through integration of MR imaging, messenger RNA expression, and DNA copy number variation. Radiology. 2014 Jan; 270(1):1-2. Jamshidi N, Diehn M, Bredel M, Kuo MD. PMID: 24056404.
      View in: PubMed   Mentions: 47     Fields:    Translation:Humans
    29. Multispecific drug transporter Slc22a8 (Oat3) regulates multiple metabolic and signaling pathways. Drug Metab Dispos. 2013 Oct; 41(10):1825-34. Wu W, Jamshidi N, Eraly SA, Liu HC, Bush KT, Palsson BO, Nigam SK. PMID: 23920220.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    30. A community-driven global reconstruction of human metabolism. Nat Biotechnol. 2013 May; 31(5):419-25. Thiele I, Swainston N, Fleming RM, Hoppe A, Sahoo S, Aurich MK, Haraldsdottir H, Mo ML, Rolfsson O, Stobbe MD, Thorleifsson SG, Agren R, Bölling C, Bordel S, Chavali AK, Dobson P, Dunn WB, Endler L, Hala D, Hucka M, Hull D, Jameson D, Jamshidi N, Jonsson JJ, Juty N, Keating S, Nookaew I, Le Novère N, Malys N, Mazein A, Papin JA, Price ND, Selkov E, Sigurdsson MI, Simeonidis E, Sonnenschein N, Smallbone K, Sorokin A, van Beek JH, Weichart D, Goryanin I, Nielsen J, Westerhoff HV, Kell DB, Mendes P, Palsson BØ. PMID: 23455439.
      View in: PubMed   Mentions: 290     Fields:    Translation:Humans
    31. Updating and curating metabolic pathways of TB. Tuberculosis (Edinb). 2013 Jan; 93(1):47-59. Slayden RA, Jackson M, Zucker J, Ramirez MV, Dawson CC, Crew R, Sampson NS, Thomas ST, Jamshidi N, Sisk P, Caspi R, Crick DC, McNeil MR, Pavelka MS, Niederweis M, Siroy A, Dona V, McFadden J, Boshoff H, Lew JM. PMID: 23375378.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansCells
    32. Parameter optimization for quantitative signal-concentration mapping using spoiled gradient echo MRI. Radiol Res Pract. 2012; 2012:815729. Hathout G, Jamshidi N. PMID: 23213523.
      View in: PubMed   Mentions:
    33. Individualized therapy of HHT driven by network analysis of metabolomic profiles. BMC Syst Biol. 2011 Dec 20; 5:200. Jamshidi N, Miller FJ, Mandel J, Evans T, Kuo MD. PMID: 22185482.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    34. Linkage of organic anion transporter-1 to metabolic pathways through integrated "omics"-driven network and functional analysis. J Biol Chem. 2011 Sep 09; 286(36):31522-31. Ahn SY, Jamshidi N, Mo ML, Wu W, Eraly SA, Dnyanmote A, Bush KT, Gallegos TF, Sweet DH, Palsson BØ, Nigam SK. PMID: 21757732.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansAnimalsCells
    35. iAB-RBC-283: A proteomically derived knowledge-base of erythrocyte metabolism that can be used to simulate its physiological and patho-physiological states. BMC Syst Biol. 2011 Jul 12; 5:110. Bordbar A, Jamshidi N, Palsson BO. PMID: 21749716.
      View in: PubMed   Mentions: 30     Fields:    Translation:HumansCells
    36. Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions. Mol Syst Biol. 2010 Oct 19; 6:422. Bordbar A, Lewis NE, Schellenberger J, Palsson BØ, Jamshidi N. PMID: 20959820.
      View in: PubMed   Mentions: 95     Fields:    Translation:HumansCells
    37. A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1. BMC Syst Biol. 2010 Oct 19; 4:140. Sigurdsson MI, Jamshidi N, Steingrimsson E, Thiele I, Palsson BØ. PMID: 20959003.
      View in: PubMed   Mentions: 50     Fields:    Translation:HumansAnimals
    38. Assessment of metabolic phenotypes in patients with non-ischemic dilated cardiomyopathy undergoing cardiac resynchronization therapy. J Cardiovasc Transl Res. 2010 Dec; 3(6):643-51. Obrzut S, Tiongson J, Jamshidi N, Phan HM, Hoh C, Birgersdotter-Green U. PMID: 20842468.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    39. Imaging and modeling of myocardial metabolism. J Cardiovasc Transl Res. 2010 Aug; 3(4):384-96. Obrzut S, Jamshidi N, Karimi A, Birgersdotter-Green U, Hoh C. PMID: 20559785.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    40. Mass action stoichiometric simulation models: incorporating kinetics and regulation into stoichiometric models. Biophys J. 2010 Jan 20; 98(2):175-85. Jamshidi N, Palsson BØ. PMID: 20338839.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansCells
    41. Nutritional systems biology modeling: from molecular mechanisms to physiology. PLoS Comput Biol. 2009 Nov; 5(11):e1000554. de Graaf AA, Freidig AP, De Roos B, Jamshidi N, Heinemann M, Rullmann JA, Hall KD, Adiels M, van Ommen B. PMID: 19956660.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansAnimals
    42. Flux-concentration duality in dynamic nonequilibrium biological networks. Biophys J. 2009 Sep 02; 97(5):L11-3. Jamshidi N, Palsson BØ. PMID: 19720010.
      View in: PubMed   Mentions: 4     Fields:    
    43. Using in silico models to simulate dual perturbation experiments: procedure development and interpretation of outcomes. BMC Syst Biol. 2009 Apr 30; 3:44. Jamshidi N, Palsson BO. PMID: 19405968.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    44. Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization. PLoS Comput Biol. 2009 Mar; 5(3):e1000312. Thiele I, Jamshidi N, Fleming RM, Palsson BØ. PMID: 19282977.
      View in: PubMed   Mentions: 70     Fields:    Translation:Cells
    45. Identification of potential pathway mediation targets in Toll-like receptor signaling. PLoS Comput Biol. 2009 Feb; 5(2):e1000292. Li F, Thiele I, Jamshidi N, Palsson BØ. PMID: 19229310.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansCells
    46. Genome-scale network analysis of imprinted human metabolic genes. Epigenetics. 2009 Jan; 4(1):43-6. Sigurdsson MI, Jamshidi N, Jonsson JJ, Palsson BO. PMID: 19218833.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    47. Top-down analysis of temporal hierarchy in biochemical reaction networks. PLoS Comput Biol. 2008 Sep 12; 4(9):e1000177. Jamshidi N, Palsson BØ. PMID: 18787685.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansAnimalsCells
    48. Formulating genome-scale kinetic models in the post-genome era. Mol Syst Biol. 2008; 4:171. Jamshidi N, Palsson BØ. PMID: 18319723.
      View in: PubMed   Mentions: 37     Fields:    Translation:Cells
    49. A genome-scale, constraint-based approach to systems biology of human metabolism. Mol Biosyst. 2007 Sep; 3(9):598-603. Mo ML, Jamshidi N, Palsson BØ. PMID: 17700859.
      View in: PubMed   Mentions: 20     Fields:    Translation:Humans
    50. Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ661 and proposing alternative drug targets. BMC Syst Biol. 2007 Jun 08; 1:26. Jamshidi N, Palsson BØ. PMID: 17555602.
      View in: PubMed   Mentions: 108     Fields:    Translation:Cells
    51. Global reconstruction of the human metabolic network based on genomic and bibliomic data. Proc Natl Acad Sci U S A. 2007 Feb 06; 104(6):1777-82. Duarte NC, Becker SA, Jamshidi N, Thiele I, Mo ML, Vo TD, Srivas R, Palsson BØ. PMID: 17267599.
      View in: PubMed   Mentions: 450     Fields:    Translation:Humans
    52. In silico analysis of SNPs and other high-throughput data. Methods Mol Biol. 2007; 366:267-85. Jamshidi N, Vo TD, Palsson BO. PMID: 17568130.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    53. Systems biology of SNPs. Mol Syst Biol. 2006; 2:38. Jamshidi N, Palsson BØ. PMID: 16820779.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansCells
    54. Systems biology of the human red blood cell. Blood Cells Mol Dis. 2006 Mar-Apr; 36(2):239-47. Jamshidi N, Palsson BØ. PMID: 16533612.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansCells
    55. The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res. 2005; 33(17):5691-702. Overbeek R, Begley T, Butler RM, Choudhuri JV, Chuang HY, Cohoon M, de Crécy-Lagard V, Diaz N, Disz T, Edwards R, Fonstein M, Frank ED, Gerdes S, Glass EM, Goesmann A, Hanson A, Iwata-Reuyl D, Jensen R, Jamshidi N, Krause L, Kubal M, Larsen N, Linke B, McHardy AC, Meyer F, Neuweger H, Olsen G, Olson R, Osterman A, Portnoy V, Pusch GD, Rodionov DA, Rückert C, Steiner J, Stevens R, Thiele I, Vassieva O, Ye Y, Zagnitko O, Vonstein V. PMID: 16214803.
      View in: PubMed   Mentions: 789     Fields:    
    56. In silico model-driven assessment of the effects of single nucleotide polymorphisms (SNPs) on human red blood cell metabolism. Genome Res. 2002 Nov; 12(11):1687-92. Jamshidi N, Wiback SJ, Palsson B BØ. PMID: 12421755.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansCells
    57. Description and analysis of metabolic connectivity and dynamics in the human red blood cell. Biophys J. 2002 Aug; 83(2):646-62. Kauffman KJ, Pajerowski JD, Jamshidi N, Palsson BO, Edwards JS. PMID: 12124254.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansCells
    58. Microelectronic array devices and techniques for electric field enhanced DNA hybridization in low-conductance buffers. Electrophoresis. 2002 May; 23(10):1543-50. Gurtner C, Tu E, Jamshidi N, Haigis RW, Onofrey TJ, Edman CF, Sosnowski R, Wallace B, Heller MJ. PMID: 12116167.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    59. Dynamic simulation of the human red blood cell metabolic network. Bioinformatics. 2001 Mar; 17(3):286-7. Jamshidi N, Edwards JS, Fahland T, Church GM, Palsson BO. PMID: 11294796.
      View in: PubMed   Mentions: 31     Fields:    Translation:HumansCells
    60. Enhanced DNA fragmentation in the thymus of spontaneously hypertensive rats. Am J Physiol. 1999 06; 276(6):H2135-40. Suzuki H, Delano FA, Jamshidi N, Katz D, Mori M, Kosaki K, Gottlieb RA, Ishii H, Schmid-Schönbein GW. PMID: 10362697.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    61. Xanthine oxidase activity associated with arterial blood pressure in spontaneously hypertensive rats. Proc Natl Acad Sci U S A. 1998 Apr 14; 95(8):4754-9. Suzuki H, DeLano FA, Parks DA, Jamshidi N, Granger DN, Ishii H, Suematsu M, Zweifach BW, Schmid-Schönbein GW. PMID: 9539811.
      View in: PubMed   Mentions: 38     Fields:    Translation:Animals
    62. Expression studies of pigmentation and POU-domain genes in human melanoma cells. Pigment Cell Res. 1994 Aug; 7(4):235-40. Sturm RA, O'Sullivan BJ, Thomson JA, Jamshidi N, Pedley J, Parsons PG. PMID: 7855069.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
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