Steven Erik Jacobsen

Title(s)Professor, Molecular, Cell and Developmental Biology
SchoolCollege of Letters and Science
vCardDownload vCard
    Other Positions
    Title(s)Professor, Biological Chemistry


    Collapse Research 
    Collapse Research Activities and Funding
    Epigenetic gene regulation in Arabidopsis
    NIH R35GM130272Feb 1, 2019 - Jan 31, 2024
    Role: Principal Investigator
    2007 Epigenetics Gordon Research Conference
    NIH R13HD056518Jul 20, 2007 - Jun 30, 2008
    Role: Principal Investigator
    Genetics of DNA methylation patterning of arabidopsis.
    NIH R37GM060398Jan 1, 2000 - Dec 31, 2018
    Role: Principal Investigator
    Genetics of DNA Methylation Patterning of Arabidopsis
    NIH R01GM060398Jan 1, 2000 - Dec 31, 2008
    Role: Principal Investigator
    SPATIAL REGULATION OF A THALIANA FLORAL HOMEOTIC GENES
    NIH F32GM015964Sep 30, 1993
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Comprehensive identification of SWI/SNF complex subunits underpins deep eukaryotic ancestry and reveals new plant components. Commun Biol. 2022 06 06; 5(1):549. Hernández-García J, Diego-Martin B, Kuo PH, Jami-Alahmadi Y, Vashisht AA, Wohlschlegel J, Jacobsen SE, Blázquez MA, Gallego-Bartolomé J. PMID: 35668117; PMCID: PMC9170682.
      View in: PubMed   Mentions: 1  Translation:AnimalsCells
    2. A SYBR Gold-based Label-free in vitro Dicing Assay. Bio Protoc. 2022 Apr 05; 12(7):e4382. Wang Q, Xue Y, Zhang L, Zhong Z, Feng S, Wang C, Xiao L, Yang Z, Harris JC, Wu Z, Zhai J, Yang M, Li S, Jacobsen SE, Du J. PMID: 35530519; PMCID: PMC9018436.
      View in: PubMed   Mentions:
    3. CRISPR-Cas-mediated transcriptional control and epi-mutagenesis. Plant Physiol. 2022 03 28; 188(4):1811-1824. Gardiner J, Ghoshal B, Wang M, Jacobsen SE. PMID: 35134247; PMCID: PMC8968285.
      View in: PubMed   Mentions: 2     Fields:    
    4. The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis. Proc Natl Acad Sci U S A. 2022 01 18; 119(3). Potok ME, Zhong Z, Picard CL, Liu Q, Do T, Jacobsen CE, Sakr O, Naranbaatar B, Thilakaratne R, Khnkoyan Z, Purl M, Cheng H, Vervaet H, Feng S, Rayatpisheh S, Wohlschlegel JA, O'Malley RC, Ecker JR, Jacobsen SE. PMID: 35027454; PMCID: PMC8784105.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    5. The role of MORC3 in silencing transposable elements in mouse embryonic stem cells. Epigenetics Chromatin. 2021 10 27; 14(1):49. Desai VP, Chouaref J, Wu H, Pastor WA, Kan RL, Oey HM, Li Z, Ho J, Vonk KKD, San Leon Granado D, Christopher MA, Clark AT, Jacobsen SE, Daxinger L. PMID: 34706774; PMCID: PMC8555065.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    6. Mechanism of siRNA production by a plant Dicer-RNA complex in dicing-competent conformation. Science. 2021 Nov 26; 374(6571):1152-1157. Wang Q, Xue Y, Zhang L, Zhong Z, Feng S, Wang C, Xiao L, Yang Z, Harris CJ, Wu Z, Zhai J, Yang M, Li S, Jacobsen SE, Du J. PMID: 34648373; PMCID: PMC8682726.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    7. Arabidopsis MORC proteins function in the efficient establishment of RNA directed DNA methylation. Nat Commun. 2021 07 13; 12(1):4292. Xue Y, Zhong Z, Harris CJ, Gallego-Bartolomé J, Wang M, Picard C, Cao X, Hua S, Kwok I, Feng S, Jami-Alahmadi Y, Sha J, Gardiner J, Wohlschlegel J, Jacobsen SE. PMID: 34257299; PMCID: PMC8277788.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    8. CRISPR-based targeting of DNA methylation in Arabidopsis thaliana by a bacterial CG-specific DNA methyltransferase. Proc Natl Acad Sci U S A. 2021 06 08; 118(23). Ghoshal B, Picard CL, Vong B, Feng S, Jacobsen SE. PMID: 34074795; PMCID: PMC8201958.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    9. MBD5 and MBD6 couple DNA methylation to gene silencing through the J-domain protein SILENZIO. Science. 2021 Jun 03. Ichino L, Boone BA, Strauskulage L, Harris CJ, Kaur G, Gladstone MA, Tan M, Feng S, Jami-Alahmadi Y, Duttke SH, Wohlschlegel JA, Cheng X, Redding S, Jacobsen SE. PMID: 34083448; PMCID: PMC8639832.
      View in: PubMed   Mentions: 6     Fields:    
    10. Ectopic targeting of CG DNA methylation in Arabidopsis with the bacterial SssI methyltransferase. Nat Commun. 2021 05 25; 12(1):3130. Liu W, Gallego-Bartolomé J, Zhou Y, Zhong Z, Wang M, Wongpalee SP, Gardiner J, Feng S, Kuo PH, Jacobsen SE. PMID: 34035251; PMCID: PMC8149686.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    11. The histone variant H2A.W and linker histone H1 co-regulate heterochromatin accessibility and DNA methylation. Nat Commun. 2021 05 11; 12(1):2683. Bourguet P, Picard CL, Yelagandula R, Pélissier T, Lorkovic ZJ, Feng S, Pouch-Pélissier MN, Schmücker A, Jacobsen SE, Berger F, Mathieu O. PMID: 33976212; PMCID: PMC8113232.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    12. Whole-genome characterization of chronological age-associated changes in methylome and circular RNAs in moso bamboo (Phyllostachys edulis) from vegetative to floral growth. Plant J. 2021 04; 106(2):435-453. Zhang Z, Wang H, Wang Y, Xi F, Wang H, Kohnen MV, Gao P, Wei W, Chen K, Liu X, Gao Y, Han X, Hu K, Zhang H, Zhu Q, Zheng Y, Liu B, Ahmad A, Hsu YH, Jacobsen SE, Gu L. PMID: 33506534.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    13. DNA methylation-linked chromatin accessibility affects genomic architecture in Arabidopsis. Proc Natl Acad Sci U S A. 2021 02 02; 118(5). Zhong Z, Feng S, Duttke SH, Potok ME, Zhang Y, Gallego-Bartolomé J, Liu W, Jacobsen SE. PMID: 33495321; PMCID: PMC7865151.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    14. A viral guide RNA delivery system for CRISPR-based transcriptional activation and heritable targeted DNA demethylation in Arabidopsis thaliana. PLoS Genet. 2020 12; 16(12):e1008983. Ghoshal B, Vong B, Picard CL, Feng S, Tam JM, Jacobsen SE. PMID: 33315895; PMCID: PMC7769603.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    15. DNA polymerase epsilon is required for heterochromatin maintenance in Arabidopsis. Genome Biol. 2020 11 25; 21(1):283. Bourguet P, López-González L, Gómez-Zambrano Á, Pélissier T, Hesketh A, Potok ME, Pouch-Pélissier MN, Perez M, Da Ines O, Latrasse D, White CI, Jacobsen SE, Benhamed M, Mathieu O. PMID: 33234150; PMCID: PMC7687843.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    16. Efficient and accurate determination of genome-wide DNA methylation patterns in Arabidopsis thaliana with enzymatic methyl sequencing. Epigenetics Chromatin. 2020 10 07; 13(1):42. Feng S, Zhong Z, Wang M, Jacobsen SE. PMID: 33028374; PMCID: PMC7542392.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    17. Promoter and Terminator Optimization for DNA Methylation Targeting in Arabidopsis. Epigenomes. 2020 Jun 12; 4(2). Gardiner J, Zhao JM, Chaffin K, Jacobsen SE. PMID: 34968243; PMCID: PMC8594676.
      View in: PubMed   Mentions: 1  
    18. NAP1-RELATED PROTEIN1 and 2 negatively regulate H2A.Z abundance in chromatin in Arabidopsis. Nat Commun. 2020 06 08; 11(1):2887. Wang Y, Zhong Z, Zhang Y, Xu L, Feng S, Rayatpisheh S, Wohlschlegel JA, Wang Z, Jacobsen SE, Ausin I. PMID: 32513971; PMCID: PMC7280298.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    19. The characterization of Mediator 12 and 13 as conditional positive gene regulators in Arabidopsis. Nat Commun. 2020 06 03; 11(1):2798. Liu Q, Bischof S, Harris CJ, Zhong Z, Zhan L, Nguyen C, Rashoff A, Barshop WD, Sun F, Feng S, Potok M, Gallego-Bartolome J, Zhai J, Wohlschlegel JA, Carey MF, Long JA, Jacobsen SE. PMID: 32493925; PMCID: PMC7271234.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    20. The plant mobile domain proteins MAIN and MAIL1 interact with the phosphatase PP7L to regulate gene expression and silence transposable elements in Arabidopsis thaliana. PLoS Genet. 2020 04; 16(4):e1008324. Nicolau M, Picault N, Descombin J, Jami-Alahmadi Y, Feng S, Bucher E, Jacobsen SE, Deragon JM, Wohlschlegel J, Moissiard G. PMID: 32287271; PMCID: PMC7156037.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    21. CryoEM structures of Arabidopsis DDR complexes involved in RNA-directed DNA methylation. Nat Commun. 2019 09 02; 10(1):3916. Wongpalee SP, Liu S, Gallego-Bartolomé J, Leitner A, Aebersold R, Liu W, Yen L, Nohales MA, Kuo PH, Vashisht AA, Wohlschlegel JA, Feng S, Kay SA, Zhou ZH, Jacobsen SE. PMID: 31477705; PMCID: PMC6718625.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    22. The Gene-Silencing Protein MORC-1 Topologically Entraps DNA and Forms Multimeric Assemblies to Cause DNA Compaction. Mol Cell. 2019 08 22; 75(4):700-710.e6. Kim H, Yen L, Wongpalee SP, Kirshner JA, Mehta N, Xue Y, Johnston JB, Burlingame AL, Kim JK, Loparo JJ, Jacobsen SE. PMID: 31442422; PMCID: PMC6814019.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    23. Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. Nat Commun. 2019 07 26; 10(1):3352. Potok ME, Wang Y, Xu L, Zhong Z, Liu W, Feng S, Naranbaatar B, Rayatpisheh S, Wang Z, Wohlschlegel JA, Ausin I, Jacobsen SE. PMID: 31350403; PMCID: PMC6659704.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    24. Multi-level Modulation of Light Signaling by GIGANTEA Regulates Both the Output and Pace of the Circadian Clock. Dev Cell. 2019 06 17; 49(6):840-851.e8. Nohales MA, Liu W, Duffy T, Nozue K, Sawa M, Pruneda-Paz JL, Maloof JN, Jacobsen SE, Kay SA. PMID: 31105011; PMCID: PMC6597437.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    25. Genome mining and biosynthesis of a polyketide from a biofertilizer fungus that can facilitate reductive iron assimilation in plant. Proc Natl Acad Sci U S A. 2019 03 19; 116(12):5499-5504. Chen M, Liu Q, Gao SS, Young AE, Jacobsen SE, Tang Y. PMID: 30842286; PMCID: PMC6431147.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    26. Site-specific manipulation of Arabidopsis loci using CRISPR-Cas9 SunTag systems. Nat Commun. 2019 02 13; 10(1):729. Papikian A, Liu W, Gallego-Bartolomé J, Jacobsen SE. PMID: 30760722; PMCID: PMC6374409.
      View in: PubMed   Mentions: 63     Fields:    Translation:AnimalsCells
    27. Co-targeting RNA Polymerases IV and V Promotes Efficient De Novo DNA Methylation in Arabidopsis. Cell. 2019 02 21; 176(5):1068-1082.e19. Gallego-Bartolomé J, Liu W, Kuo PH, Feng S, Ghoshal B, Gardiner J, Zhao JM, Park SY, Chory J, Jacobsen SE. PMID: 30739798; PMCID: PMC6386582.
      View in: PubMed   Mentions: 42     Fields:    Translation:AnimalsCells
    28. ADCP1: a novel plant H3K9me2 reader. Cell Res. 2019 01; 29(1):6-7. Harris CJ, Jacobsen SE. PMID: 30514899; PMCID: PMC6318331.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    29. The TFAP2C-Regulated OCT4 Naive Enhancer Is Involved in Human Germline Formation. Cell Rep. 2018 12 26; 25(13):3591-3602.e5. Chen D, Liu W, Zimmerman J, Pastor WA, Kim R, Hosohama L, Ho J, Aslanyan M, Gell JJ, Jacobsen SE, Clark AT. PMID: 30590035; PMCID: PMC6342560.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansCells
    30. A DNA methylation reader complex that enhances gene transcription. Science. 2018 12 07; 362(6419):1182-1186. Harris CJ, Scheibe M, Wongpalee SP, Liu W, Cornett EM, Vaughan RM, Li X, Chen W, Xue Y, Zhong Z, Yen L, Barshop WD, Rayatpisheh S, Gallego-Bartolome J, Groth M, Wang Z, Wohlschlegel JA, Du J, Rothbart SB, Butter F, Jacobsen SE. PMID: 30523112; PMCID: PMC6353633.
      View in: PubMed   Mentions: 68     Fields:    Translation:AnimalsCells
    31. A Nucleosome Bridging Mechanism for Activation of a Maintenance DNA Methyltransferase. Mol Cell. 2019 01 03; 73(1):73-83.e6. Stoddard CI, Feng S, Campbell MG, Liu W, Wang H, Zhong X, Bernatavichute Y, Cheng Y, Jacobsen SE, Narlikar GJ. PMID: 30415948; PMCID: PMC6407616.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    32. The impact and prospect of natural product discovery in agriculture: New technologies to explore the diversity of secondary metabolites in plants and microorganisms for applications in agriculture. EMBO Rep. 2018 11; 19(11). Yan Y, Liu Q, Jacobsen SE, Tang Y. PMID: 30361392; PMCID: PMC6216283.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    33. Mechanistic insights into plant SUVH family H3K9 methyltransferases and their binding to context-biased non-CG DNA methylation. Proc Natl Acad Sci U S A. 2018 09 11; 115(37):E8793-E8802. Li X, Harris CJ, Zhong Z, Chen W, Liu R, Jia B, Wang Z, Li S, Jacobsen SE, Du J. PMID: 30150382; PMCID: PMC6140468.
      View in: PubMed   Mentions: 34     Fields:    Translation:AnimalsCells
    34. Epigenome-wide association in adipose tissue from the METSIM cohort. Hum Mol Genet. 2018 07 15; 27(14):2586. Orozco LD, Farrell C, Hale C, Rubbi L, Rinaldi A, Civelek M, Pan C, Lam L, Montoya D, Edillor C, Seldin M, Boehnke M, Mohlke KL, Jacobsen S, Kuusisto J, Laakso M, Lusis AJ, Pellegrini M. PMID: 29893869; PMCID: PMC6030960.
      View in: PubMed   Mentions: 5     Fields:    
    35. Resistance-gene-directed discovery of a natural-product herbicide with a new mode of action. Nature. 2018 07; 559(7714):415-418. Yan Y, Liu Q, Zang X, Yuan S, Bat-Erdene U, Nguyen C, Gan J, Zhou J, Jacobsen SE, Tang Y. PMID: 29995859; PMCID: PMC6097235.
      View in: PubMed   Mentions: 48     Fields:    Translation:Animals
    36. Epigenome-wide association in adipose tissue from the METSIM cohort. Hum Mol Genet. 2018 05 15; 27(10):1830-1846. Orozco LD, Farrell C, Hale C, Rubbi L, Rinaldi A, Civelek M, Pan C, Lam L, Montoya D, Edillor C, Seldin M, Boehnke M, Mohlke KL, Jacobsen S, Kuusisto J, Laakso M, Lusis AJ, Pellegrini M. PMID: 29566149; PMCID: PMC5932563.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansCells
    37. TFAP2C regulates transcription in human naive pluripotency by opening enhancers. Nat Cell Biol. 2018 05; 20(5):553-564. Pastor WA, Liu W, Chen D, Ho J, Kim R, Hunt TJ, Lukianchikov A, Liu X, Polo JM, Jacobsen SE, Clark AT. PMID: 29695788; PMCID: PMC5926822.
      View in: PubMed   Mentions: 58     Fields:    Translation:HumansAnimalsCells
    38. Targeted DNA demethylation of the Arabidopsis genome using the human TET1 catalytic domain. Proc Natl Acad Sci U S A. 2018 02 27; 115(9):E2125-E2134. Gallego-Bartolomé J, Gardiner J, Liu W, Papikian A, Ghoshal B, Kuo HY, Zhao JM, Segal DJ, Jacobsen SE. PMID: 29444862; PMCID: PMC5834696.
      View in: PubMed   Mentions: 63     Fields:    Translation:HumansAnimalsCells
    39. RNA-directed DNA methylation involves co-transcriptional small-RNA-guided slicing of polymerase V transcripts in Arabidopsis. Nat Plants. 2018 03; 4(3):181-188. Liu W, Duttke SH, Hetzel J, Groth M, Feng S, Gallego-Bartolome J, Zhong Z, Kuo HY, Wang Z, Zhai J, Chory J, Jacobsen SE. PMID: 29379150; PMCID: PMC5832601.
      View in: PubMed   Mentions: 37     Fields:    Translation:AnimalsCells
    40. Large-scale comparative epigenomics reveals hierarchical regulation of non-CG methylation in Arabidopsis. Proc Natl Acad Sci U S A. 2018 01 30; 115(5):E1069-E1074. Zhang Y, Harris CJ, Liu Q, Liu W, Ausin I, Long Y, Xiao L, Feng L, Chen X, Xie Y, Chen X, Zhan L, Feng S, Li JJ, Wang H, Zhai J, Jacobsen SE. PMID: 29339507; PMCID: PMC5798360.
      View in: PubMed   Mentions: 26     Fields:    Translation:AnimalsCells
    41. The histone H3 variant H3.3 regulates gene body DNA methylation in Arabidopsis thaliana. Genome Biol. 2017 05 18; 18(1):94. Wollmann H, Stroud H, Yelagandula R, Tarutani Y, Jiang D, Jing L, Jamge B, Takeuchi H, Holec S, Nie X, Kakutani T, Jacobsen SE, Berger F. PMID: 28521766; PMCID: PMC5437678.
      View in: PubMed   Mentions: 37     Fields:    Translation:AnimalsCells
    42. Corrigendum: SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation. Nature. 2017 03 02; 543(7643):136. Johnson LM, Du J, Hale CJ, Bischof S, Feng S, Chodavarapu RK, Zhong X, Marson G, Pellegrini M, Segal DJ, Patel DJ, Jacobsen SE. PMID: 28178234.
      View in: PubMed   Mentions:    Fields:    
    43. Germline competency of human embryonic stem cells depends on eomesodermin. Biol Reprod. 2017 01 01; 97(6):850-861. Chen D, Liu W, Lukianchikov A, Hancock GV, Zimmerman J, Lowe MG, Kim R, Galic Z, Irie N, Surani MA, Jacobsen SE, Clark AT. PMID: 29091993; PMCID: PMC5803789.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansCells
    44. Large-scale heterochromatin remodeling linked to overreplication-associated DNA damage. Proc Natl Acad Sci U S A. 2017 01 10; 114(2):406-411. Feng W, Hale CJ, Over RS, Cokus SJ, Jacobsen SE, Michaels SD. PMID: 28028228; PMCID: PMC5240675.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    45. Evidence for ARGONAUTE4-DNA interactions in RNA-directed DNA methylation in plants. Genes Dev. 2016 12 01; 30(23):2565-2570. Lahmy S, Pontier D, Bies-Etheve N, Laudié M, Feng S, Jobet E, Hale CJ, Cooke R, Hakimi MA, Angelov D, Jacobsen SE, Lagrange T. PMID: 27986858; PMCID: PMC5204349.
      View in: PubMed   Mentions: 25     Fields:    Translation:Cells
    46. DNA methylome of the 20-gigabase Norway spruce genome. Proc Natl Acad Sci U S A. 2016 12 13; 113(50):E8106-E8113. Ausin I, Feng S, Yu C, Liu W, Kuo HY, Jacobsen EL, Zhai J, Gallego-Bartolome J, Wang L, Egertsdotter U, Street NR, Jacobsen SE, Wang H. PMID: 27911846; PMCID: PMC5167160.
      View in: PubMed   Mentions: 32     Fields:    Translation:AnimalsCells
    47. MTHFD1 controls DNA methylation in Arabidopsis. Nat Commun. 2016 06 13; 7:11640. Groth M, Moissiard G, Wirtz M, Wang H, Garcia-Salinas C, Ramos-Parra PA, Bischof S, Feng S, Cokus SJ, John A, Smith DC, Zhai J, Hale CJ, Long JA, Hell R, Díaz de la Garza RI, Jacobsen SE. PMID: 27291711; PMCID: PMC4909953.
      View in: PubMed   Mentions: 23     Fields:    Translation:AnimalsCells
    48. Identification of Multiple Proteins Coupling Transcriptional Gene Silencing to Genome Stability in Arabidopsis thaliana. PLoS Genet. 2016 06; 12(6):e1006092. Hale CJ, Potok ME, Lopez J, Do T, Liu A, Gallego-Bartolome J, Michaels SD, Jacobsen SE. PMID: 27253878; PMCID: PMC4890748.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    49. Arabidopsis AtMORC4 and AtMORC7 Form Nuclear Bodies and Repress a Large Number of Protein-Coding Genes. PLoS Genet. 2016 05; 12(5):e1005998. Harris CJ, Husmann D, Liu W, Kasmi FE, Wang H, Papikian A, Pastor WA, Moissiard G, Vashisht AA, Dangl JL, Wohlschlegel JA, Jacobsen SE. PMID: 27171361; PMCID: PMC4865129.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    50. Structural Basis for the Unique Multivalent Readout of Unmodified H3 Tail by Arabidopsis ORC1b BAH-PHD Cassette. Structure. 2016 Mar 01; 24(3):486-94. Li S, Yang Z, Du X, Liu R, Wilkinson AW, Gozani O, Jacobsen SE, Patel DJ, Du J. PMID: 26876097; PMCID: PMC4775424.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    51. Naive Human Pluripotent Cells Feature a Methylation Landscape Devoid of Blastocyst or Germline Memory. Cell Stem Cell. 2016 Mar 03; 18(3):323-329. Pastor WA, Chen D, Liu W, Kim R, Sahakyan A, Lukianchikov A, Plath K, Jacobsen SE, Clark AT. PMID: 26853856; PMCID: PMC4779431.
      View in: PubMed   Mentions: 114     Fields:    Translation:HumansAnimalsCells
    52. CG gene body DNA methylation changes and evolution of duplicated genes in cassava. Proc Natl Acad Sci U S A. 2015 Nov 03; 112(44):13729-34. Wang H, Beyene G, Zhai J, Feng S, Fahlgren N, Taylor NJ, Bart R, Carrington JC, Jacobsen SE, Ausin I. PMID: 26483493; PMCID: PMC4640745.
      View in: PubMed   Mentions: 62     Fields:    Translation:AnimalsCells
    53. A One Precursor One siRNA Model for Pol IV-Dependent siRNA Biogenesis. Cell. 2015 Oct 08; 163(2):445-55. Zhai J, Bischof S, Wang H, Feng S, Lee TF, Teng C, Chen X, Park SY, Liu L, Gallego-Bartolome J, Liu W, Henderson IR, Meyers BC, Ausin I, Jacobsen SE. PMID: 26451488; PMCID: PMC5023148.
      View in: PubMed   Mentions: 99     Fields:    Translation:AnimalsCells
    54. C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Cell Discov. 2015; 1. Zhang S, Zhou B, Kang Y, Cui X, Liu A, Deleris A, Greenberg MV, Cui X, Qiu Q, Lu F, Wohlschlegel JA, Jacobsen SE, Cao X. PMID: 26617990; PMCID: PMC4659397.
      View in: PubMed   Mentions: 20  
    55. In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse. Elife. 2015 Apr 07; 4:e06205. Morselli M, Pastor WA, Montanini B, Nee K, Ferrari R, Fu K, Bonora G, Rubbi L, Clark AT, Ottonello S, Jacobsen SE, Pellegrini M. PMID: 25848745; PMCID: PMC4412109.
      View in: PubMed   Mentions: 76     Fields:    Translation:AnimalsCells
    56. Domains rearranged methyltransferase3 controls DNA methylation and regulates RNA polymerase V transcript abundance in Arabidopsis. Proc Natl Acad Sci U S A. 2015 Jan 20; 112(3):911-6. Zhong X, Hale CJ, Nguyen M, Ausin I, Groth M, Hetzel J, Vashisht AA, Henderson IR, Wohlschlegel JA, Jacobsen SE. PMID: 25561521; PMCID: PMC4311829.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    57. Rare allele of a previously unidentified histone H4 acetyltransferase enhances grain weight, yield, and plant biomass in rice. Proc Natl Acad Sci U S A. 2015 Jan 06; 112(1):76-81. Song XJ, Kuroha T, Ayano M, Furuta T, Nagai K, Komeda N, Segami S, Miura K, Ogawa D, Kamura T, Suzuki T, Higashiyama T, Yamasaki M, Mori H, Inukai Y, Wu J, Kitano H, Sakakibara H, Jacobsen SE, Ashikari M. PMID: 25535376; PMCID: PMC4291654.
      View in: PubMed   Mentions: 83     Fields:    Translation:HumansAnimalsCells
    58. MORC1 represses transposable elements in the mouse male germline. Nat Commun. 2014 Dec 12; 5:5795. Pastor WA, Stroud H, Nee K, Liu W, Pezic D, Manakov S, Lee SA, Moissiard G, Zamudio N, Bourc'his D, Aravin AA, Clark AT, Jacobsen SE. PMID: 25503965; PMCID: PMC4268658.
      View in: PubMed   Mentions: 54     Fields:    Translation:AnimalsCells
    59. SNF2 chromatin remodeler-family proteins FRG1 and -2 are required for RNA-directed DNA methylation. Proc Natl Acad Sci U S A. 2014 Dec 09; 111(49):17666-71. Groth M, Stroud H, Feng S, Greenberg MV, Vashisht AA, Wohlschlegel JA, Jacobsen SE, Ausin I. PMID: 25425661; PMCID: PMC4267348.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    60. Genome-wide Hi-C analyses in wild-type and mutants reveal high-resolution chromatin interactions in Arabidopsis. Mol Cell. 2014 Sep 04; 55(5):694-707. Feng S, Cokus SJ, Schubert V, Zhai J, Pellegrini M, Jacobsen SE. PMID: 25132175; PMCID: PMC4347903.
      View in: PubMed   Mentions: 121     Fields:    Translation:AnimalsCells
    61. Mechanism of DNA methylation-directed histone methylation by KRYPTONITE. Mol Cell. 2014 Aug 07; 55(3):495-504. Du J, Johnson LM, Groth M, Feng S, Hale CJ, Li S, Vashisht AA, Wohlschlegel JA, Patel DJ, Jacobsen SE. PMID: 25018018; PMCID: PMC4127122.
      View in: PubMed   Mentions: 80     Fields:    Translation:AnimalsCells
    62. The histone variant H2A.W defines heterochromatin and promotes chromatin condensation in Arabidopsis. Cell. 2014 Jul 03; 158(1):98-109. Yelagandula R, Stroud H, Holec S, Zhou K, Feng S, Zhong X, Muthurajan UM, Nie X, Kawashima T, Groth M, Luger K, Jacobsen SE, Berger F. PMID: 24995981; PMCID: PMC4671829.
      View in: PubMed   Mentions: 91     Fields:    Translation:AnimalsCells
    63. Molecular mechanism of action of plant DRM de novo DNA methyltransferases. Cell. 2014 May 22; 157(5):1050-60. Zhong X, Du J, Hale CJ, Gallego-Bartolome J, Feng S, Vashisht AA, Chory J, Wohlschlegel JA, Patel DJ, Jacobsen SE. PMID: 24855943; PMCID: PMC4123750.
      View in: PubMed   Mentions: 110     Fields:    Translation:AnimalsCells
    64. Transcriptional gene silencing by Arabidopsis microrchidia homologues involves the formation of heteromers. Proc Natl Acad Sci U S A. 2014 May 20; 111(20):7474-9. Moissiard G, Bischof S, Husmann D, Pastor WA, Hale CJ, Yen L, Stroud H, Papikian A, Vashisht AA, Wohlschlegel JA, Jacobsen SE. PMID: 24799676; PMCID: PMC4034193.
      View in: PubMed   Mentions: 30     Fields:    Translation:AnimalsCells
    65. SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation. Nature. 2014 03 06; 507(7490):124-128. Johnson LM, Du J, Hale CJ, Bischof S, Feng S, Chodavarapu RK, Zhong X, Marson G, Pellegrini M, Segal DJ, Patel DJ, Jacobsen SE. PMID: 24463519; PMCID: PMC3963826.
      View in: PubMed   Mentions: 127     Fields:    Translation:AnimalsCells
    66. Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis. Nat Struct Mol Biol. 2014 Jan; 21(1):64-72. Stroud H, Do T, Du J, Zhong X, Feng S, Johnson L, Patel DJ, Jacobsen SE. PMID: 24336224; PMCID: PMC4103798.
      View in: PubMed   Mentions: 331     Fields:    Translation:AnimalsCells
    67. Interplay between active chromatin marks and RNA-directed DNA methylation in Arabidopsis thaliana. PLoS Genet. 2013 Nov; 9(11):e1003946. Greenberg MV, Deleris A, Hale CJ, Liu A, Feng S, Jacobsen SE. PMID: 24244201; PMCID: PMC3820799.
      View in: PubMed   Mentions: 36     Fields:    Translation:AnimalsCells
    68. Epigenetic differences between shoots and roots in Arabidopsis reveals tissue-specific regulation. Epigenetics. 2014 Feb; 9(2):236-42. Widman N, Feng S, Jacobsen SE, Pellegrini M. PMID: 24169618; PMCID: PMC3962533.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    69. Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1. Nature. 2013 Jun 20; 498(7454):385-9. Law JA, Du J, Hale CJ, Feng S, Krajewski K, Palanca AM, Strahl BD, Patel DJ, Jacobsen SE. PMID: 23636332; PMCID: PMC4119789.
      View in: PubMed   Mentions: 154     Fields:    Translation:AnimalsCells
    70. Plants regenerated from tissue culture contain stable epigenome changes in rice. Elife. 2013 Mar 19; 2:e00354. Stroud H, Ding B, Simon SA, Feng S, Bellizzi M, Pellegrini M, Wang GL, Meyers BC, Jacobsen SE. PMID: 23539454; PMCID: PMC3601819.
      View in: PubMed   Mentions: 95     Fields:    Translation:AnimalsCells
    71. Stage-specific roles for tet1 and tet2 in DNA demethylation in primordial germ cells. Cell Stem Cell. 2013 Apr 04; 12(4):470-8. Vincent JJ, Huang Y, Chen PY, Feng S, Calvopiña JH, Nee K, Lee SA, Le T, Yoon AJ, Faull K, Fan G, Rao A, Jacobsen SE, Pellegrini M, Clark AT. PMID: 23415914; PMCID: PMC3684274.
      View in: PubMed   Mentions: 76     Fields:    Translation:AnimalsCells
    72. A matrix protein silences transposons and repeats through interaction with retinoblastoma-associated proteins. Curr Biol. 2013 Feb 18; 23(4):345-50. Xu Y, Wang Y, Stroud H, Gu X, Sun B, Gan ES, Ng KH, Jacobsen SE, He Y, Ito T. PMID: 23394836.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    73. Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome. Cell. 2013 Jan 17; 152(1-2):352-64. Stroud H, Greenberg MV, Feng S, Bernatavichute YV, Jacobsen SE. PMID: 23313553; PMCID: PMC3597350.
      View in: PubMed   Mentions: 388     Fields:    Translation:AnimalsCells
    74. Loss of the DNA methyltransferase MET1 Induces H3K9 hypermethylation at PcG target genes and redistribution of H3K27 trimethylation to transposons in Arabidopsis thaliana. PLoS Genet. 2012; 8(11):e1003062. Deleris A, Stroud H, Bernatavichute Y, Johnson E, Klein G, Schubert D, Jacobsen SE. PMID: 23209430; PMCID: PMC3510029.
      View in: PubMed   Mentions: 76     Fields:    Translation:AnimalsCells
    75. The SET-domain protein SUVR5 mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation-independent manner. PLoS Genet. 2012; 8(10):e1002995. Caro E, Stroud H, Greenberg MV, Bernatavichute YV, Feng S, Groth M, Vashisht AA, Wohlschlegel J, Jacobsen SE. PMID: 23071452; PMCID: PMC3469426.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    76. Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants. Cell. 2012 Sep 28; 151(1):167-80. Du J, Zhong X, Bernatavichute YV, Stroud H, Feng S, Caro E, Vashisht AA, Terragni J, Chin HG, Tu A, Hetzel J, Wohlschlegel JA, Pradhan S, Patel DJ, Jacobsen SE. PMID: 23021223; PMCID: PMC3471781.
      View in: PubMed   Mentions: 215     Fields:    Translation:AnimalsCells
    77. Features of the Arabidopsis recombination landscape resulting from the combined loss of sequence variation and DNA methylation. Proc Natl Acad Sci U S A. 2012 Oct 02; 109(40):16240-5. Colomé-Tatché M, Cortijo S, Wardenaar R, Morgado L, Lahouze B, Sarazin A, Etcheverry M, Martin A, Feng S, Duvernois-Berthet E, Labadie K, Wincker P, Jacobsen SE, Jansen RC, Colot V, Johannes F. PMID: 22988127; PMCID: PMC3479620.
      View in: PubMed   Mentions: 65     Fields:    Translation:AnimalsCells
    78. DDR complex facilitates global association of RNA polymerase V to promoters and evolutionarily young transposons. Nat Struct Mol Biol. 2012 Sep; 19(9):870-5. Zhong X, Hale CJ, Law JA, Johnson LM, Feng S, Tu A, Jacobsen SE. PMID: 22864289; PMCID: PMC3443314.
      View in: PubMed   Mentions: 99     Fields:    Translation:AnimalsCells
    79. Transcriptome and methylome interactions in rice hybrids. Proc Natl Acad Sci U S A. 2012 Jul 24; 109(30):12040-5. Chodavarapu RK, Feng S, Ding B, Simon SA, Lopez D, Jia Y, Wang GL, Meyers BC, Jacobsen SE, Pellegrini M. PMID: 22778444; PMCID: PMC3409791.
      View in: PubMed   Mentions: 85     Fields:    Translation:AnimalsCells
    80. DNA methyltransferases are required to induce heterochromatic re-replication in Arabidopsis. PLoS Genet. 2012 Jul; 8(7):e1002808. Stroud H, Hale CJ, Feng S, Caro E, Jacob Y, Michaels SD, Jacobsen SE. PMID: 22792077; PMCID: PMC3390372.
      View in: PubMed   Mentions: 37     Fields:    Translation:AnimalsCells
    81. INVOLVED IN DE NOVO 2-containing complex involved in RNA-directed DNA methylation in Arabidopsis. Proc Natl Acad Sci U S A. 2012 May 29; 109(22):8374-81. Ausin I, Greenberg MV, Simanshu DK, Hale CJ, Vashisht AA, Simon SA, Lee TF, Feng S, Española SD, Meyers BC, Wohlschlegel JA, Patel DJ, Jacobsen SE. PMID: 22592791; PMCID: PMC3365198.
      View in: PubMed   Mentions: 48     Fields:    Translation:AnimalsCells
    82. MORC family ATPases required for heterochromatin condensation and gene silencing. Science. 2012 Jun 15; 336(6087):1448-51. Moissiard G, Cokus SJ, Cary J, Feng S, Billi AC, Stroud H, Husmann D, Zhan Y, Lajoie BR, McCord RP, Hale CJ, Feng W, Michaels SD, Frand AR, Pellegrini M, Dekker J, Kim JK, Jacobsen SE. PMID: 22555433; PMCID: PMC3376212.
      View in: PubMed   Mentions: 141     Fields:    Translation:AnimalsCells
    83. Histone methyltransferases regulating rRNA gene dose and dosage control in Arabidopsis. Genes Dev. 2012 May 01; 26(9):945-57. Pontvianne F, Blevins T, Chandrasekhara C, Feng W, Stroud H, Jacobsen SE, Michaels SD, Pikaard CS. PMID: 22549957; PMCID: PMC3347792.
      View in: PubMed   Mentions: 42     Fields:    Translation:AnimalsCells
    84. Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana. Proc Natl Acad Sci U S A. 2012 Apr 03; 109(14):5370-5. Stroud H, Otero S, Desvoyes B, Ramírez-Parra E, Jacobsen SE, Gutierrez C. PMID: 22431625; PMCID: PMC3325649.
      View in: PubMed   Mentions: 89     Fields:    Translation:AnimalsCells
    85. Plant biology: Equal-parenting policy. Nature. 2012 Jan 22; 482(7383):42-4. Hale CJ, Jacobsen SE. PMID: 22266937.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    86. The splicing factor SR45 affects the RNA-directed DNA methylation pathway in Arabidopsis. Epigenetics. 2012 Jan 01; 7(1):29-33. Ausin I, Greenberg MV, Li CF, Jacobsen SE. PMID: 22274613; PMCID: PMC3329499.
      View in: PubMed   Mentions: 28     Fields:    Translation:AnimalsCells
    87. SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV. PLoS Genet. 2011 Jul; 7(7):e1002195. Law JA, Vashisht AA, Wohlschlegel JA, Jacobsen SE. PMID: 21811420; PMCID: PMC3141008.
      View in: PubMed   Mentions: 94     Fields:    Translation:AnimalsCells
    88. A comparative analysis of DNA methylation across human embryonic stem cell lines. Genome Biol. 2011 Jul 06; 12(7):R62. Chen PY, Feng S, Joo JW, Jacobsen SE, Pellegrini M. PMID: 21733148; PMCID: PMC3218824.
      View in: PubMed   Mentions: 49     Fields:    Translation:HumansCells
    89. 5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells. Genome Biol. 2011 Jun 20; 12(6):R54. Stroud H, Feng S, Morey Kinney S, Pradhan S, Jacobsen SE. PMID: 21689397; PMCID: PMC3218842.
      View in: PubMed   Mentions: 237     Fields:    Translation:HumansCells
    90. Identification of genes required for de novo DNA methylation in Arabidopsis. Epigenetics. 2011 Mar; 6(3):344-54. Greenberg MV, Ausin I, Chan SW, Cokus SJ, Cuperus JT, Feng S, Law JA, Chu C, Pellegrini M, Carrington JC, Jacobsen SE. PMID: 21150311; PMCID: PMC3092683.
      View in: PubMed   Mentions: 38     Fields:    Translation:AnimalsCells
    91. Genome-wide mapping of Arabidopsis thaliana origins of DNA replication and their associated epigenetic marks. Nat Struct Mol Biol. 2011 Mar; 18(3):395-400. Costas C, de la Paz Sanchez M, Stroud H, Yu Y, Oliveros JC, Feng S, Benguria A, López-Vidriero I, Zhang X, Solano R, Jacobsen SE, Gutierrez C. PMID: 21297636; PMCID: PMC3079358.
      View in: PubMed   Mentions: 61     Fields:    Translation:AnimalsCells
    92. A dual flip-out mechanism for 5mC recognition by the Arabidopsis SUVH5 SRA domain and its impact on DNA methylation and H3K9 dimethylation in vivo. Genes Dev. 2011 Jan 15; 25(2):137-52. Rajakumara E, Law JA, Simanshu DK, Voigt P, Johnson LM, Reinberg D, Patel DJ, Jacobsen SE. PMID: 21245167; PMCID: PMC3022260.
      View in: PubMed   Mentions: 58     Fields:    Translation:AnimalsCells
    93. Epigenetic modifications in plants: an evolutionary perspective. Curr Opin Plant Biol. 2011 Apr; 14(2):179-86. Feng S, Jacobsen SE. PMID: 21233005; PMCID: PMC3097131.
      View in: PubMed   Mentions: 83     Fields:    Translation:AnimalsCells
    94. Determining DNA methylation profiles using sequencing. Methods Mol Biol. 2011; 733:223-38. Feng S, Rubbi L, Jacobsen SE, Pellegrini M. PMID: 21431774.
      View in: PubMed   Mentions: 25     Fields:    Translation:Cells
    95. Involvement of a Jumonji-C domain-containing histone demethylase in DRM2-mediated maintenance of DNA methylation. EMBO Rep. 2010 Dec; 11(12):950-5. Deleris A, Greenberg MV, Ausin I, Law RW, Moissiard G, Schubert D, Jacobsen SE. PMID: 21052090; PMCID: PMC2999860.
      View in: PubMed   Mentions: 37     Fields:    Translation:AnimalsCells
    96. Epigenetic reprogramming in plant and animal development. Science. 2010 Oct 29; 330(6004):622-7. Feng S, Jacobsen SE, Reik W. PMID: 21030646; PMCID: PMC2989926.
      View in: PubMed   Mentions: 423     Fields:    Translation:AnimalsCells
    97. The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana. PLoS Genet. 2010 Oct 28; 6(10):e1001182. Henderson IR, Deleris A, Wong W, Zhong X, Chin HG, Horwitz GA, Kelly KA, Pradhan S, Jacobsen SE. PMID: 21060858; PMCID: PMC2965745.
      View in: PubMed   Mentions: 47     Fields:    Translation:AnimalsCells
    98. Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases. Nature. 2010 Aug 19; 466(7309):987-91. Jacob Y, Stroud H, Leblanc C, Feng S, Zhuo L, Caro E, Hassel C, Gutierrez C, Michaels SD, Jacobsen SE. PMID: 20631708; PMCID: PMC2964344.
      View in: PubMed   Mentions: 84     Fields:    Translation:AnimalsCells
    99. Relationship between nucleosome positioning and DNA methylation. Nature. 2010 Jul 15; 466(7304):388-92. Chodavarapu RK, Feng S, Bernatavichute YV, Chen PY, Stroud H, Yu Y, Hetzel JA, Kuo F, Kim J, Cokus SJ, Casero D, Bernal M, Huijser P, Clark AT, Krämer U, Merchant SS, Zhang X, Jacobsen SE, Pellegrini M. PMID: 20512117; PMCID: PMC2964354.
      View in: PubMed   Mentions: 335     Fields:    Translation:HumansAnimalsCells
    100. A protein complex required for polymerase V transcripts and RNA- directed DNA methylation in Arabidopsis. Curr Biol. 2010 May 25; 20(10):951-6. Law JA, Ausin I, Johnson LM, Vashisht AA, Zhu JK, Wohlschlegel JA, Jacobsen SE. PMID: 20409711; PMCID: PMC2972704.
      View in: PubMed   Mentions: 105     Fields:    Translation:AnimalsCells
    101. Conservation and divergence of methylation patterning in plants and animals. Proc Natl Acad Sci U S A. 2010 May 11; 107(19):8689-94. Feng S, Cokus SJ, Zhang X, Chen PY, Bostick M, Goll MG, Hetzel J, Jain J, Strauss SH, Halpern ME, Ukomadu C, Sadler KC, Pradhan S, Pellegrini M, Jacobsen SE. PMID: 20395551; PMCID: PMC2889301.
      View in: PubMed   Mentions: 523     Fields:    Translation:AnimalsCells
    102. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet. 2010 Mar; 11(3):204-20. Law JA, Jacobsen SE. PMID: 20142834; PMCID: PMC3034103.
      View in: PubMed   Mentions: 1407     Fields:    Translation:AnimalsCells
    103. Accurate sodium bisulfite sequencing in plants. Epigenetics. 2010 Jan 01; 5(1):47-9. Henderson IR, Chan SR, Cao X, Johnson L, Jacobsen SE. PMID: 20081358; PMCID: PMC2829377.
      View in: PubMed   Mentions: 28     Fields:    Translation:AnimalsCells
    104. IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana. Nat Struct Mol Biol. 2009 Dec; 16(12):1325-7. Ausin I, Mockler TC, Chory J, Jacobsen SE. PMID: 19915591; PMCID: PMC2842998.
      View in: PubMed   Mentions: 59     Fields:    Translation:AnimalsCells
    105. A metastable DWARF1 epigenetic mutant affecting plant stature in rice. Proc Natl Acad Sci U S A. 2009 Jul 07; 106(27):11218-23. Miura K, Agetsuma M, Kitano H, Yoshimura A, Matsuoka M, Jacobsen SE, Ashikari M. PMID: 19541604; PMCID: PMC2708680.
      View in: PubMed   Mentions: 62     Fields:    Translation:AnimalsCells
    106. Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana. Genome Biol. 2009; 10(6):R62. Zhang X, Bernatavichute YV, Cokus S, Pellegrini M, Jacobsen SE. PMID: 19508735; PMCID: PMC2718496.
      View in: PubMed   Mentions: 232     Fields:    Translation:AnimalsCells
    107. ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing. Nat Struct Mol Biol. 2009 Jul; 16(7):763-8. Jacob Y, Feng S, LeBlanc CA, Bernatavichute YV, Stroud H, Cokus S, Johnson LM, Pellegrini M, Jacobsen SE, Michaels SD. PMID: 19503079; PMCID: PMC2754316.
      View in: PubMed   Mentions: 122     Fields:    Translation:AnimalsCells
    108. Molecular biology. Dynamic DNA methylation. Science. 2009 Mar 20; 323(5921):1568-9. Law JA, Jacobsen SE. PMID: 19299607.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    109. Determining the conservation of DNA methylation in Arabidopsis. Epigenetics. 2009 Feb 16; 4(2):119-24. Widman N, Jacobsen SE, Pellegrini M. PMID: 19384058.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    110. Criteria for annotation of plant MicroRNAs. Plant Cell. 2008 Dec; 20(12):3186-90. Meyers BC, Axtell MJ, Bartel B, Bartel DP, Baulcombe D, Bowman JL, Cao X, Carrington JC, Chen X, Green PJ, Griffiths-Jones S, Jacobsen SE, Mallory AC, Martienssen RA, Poethig RS, Qi Y, Vaucheret H, Voinnet O, Watanabe Y, Weigel D, Zhu JK. PMID: 19074682; PMCID: PMC2630443.
      View in: PubMed   Mentions: 612     Fields:    
    111. SRA-domain proteins required for DRM2-mediated de novo DNA methylation. PLoS Genet. 2008 Nov; 4(11):e1000280. Johnson LM, Law JA, Khattar A, Henderson IR, Jacobsen SE. PMID: 19043555; PMCID: PMC2582956.
      View in: PubMed   Mentions: 77     Fields:    Translation:AnimalsCells
    112. ORTH/VIM proteins that regulate DNA methylation are functional ubiquitin E3 ligases. Plant J. 2008 Dec; 56(5):704-15. Kraft E, Bostick M, Jacobsen SE, Callis J. PMID: 18643997; PMCID: PMC2973330.
      View in: PubMed   Mentions: 27     Fields:    Translation:AnimalsCells
    113. Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana. PLoS One. 2008 Sep 08; 3(9):e3156. Bernatavichute YV, Zhang X, Cokus S, Pellegrini M, Jacobsen SE. PMID: 18776934; PMCID: PMC2522283.
      View in: PubMed   Mentions: 157     Fields:    Translation:AnimalsCells
    114. Sequencing sliced ends reveals microRNA targets. Nat Biotechnol. 2008 Aug; 26(8):881-2. Henderson IR, Jacobsen SE. PMID: 18688239; PMCID: PMC2989925.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    115. Tandem repeats upstream of the Arabidopsis endogene SDC recruit non-CG DNA methylation and initiate siRNA spreading. Genes Dev. 2008 Jun 15; 22(12):1597-606. Henderson IR, Jacobsen SE. PMID: 18559476; PMCID: PMC2428058.
      View in: PubMed   Mentions: 108     Fields:    Translation:AnimalsCells
    116. The impact of Arabidopsis on human health: diversifying our portfolio. Cell. 2008 Jun 13; 133(6):939-43. Jones AM, Chory J, Dangl JL, Estelle M, Jacobsen SE, Meyerowitz EM, Nordborg M, Weigel D. PMID: 18555767; PMCID: PMC3124625.
      View in: PubMed   Mentions: 34     Fields:    Translation:HumansAnimals
    117. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature. 2008 Mar 13; 452(7184):215-9. Cokus SJ, Feng S, Zhang X, Chen Z, Merriman B, Haudenschild CD, Pradhan S, Nelson SF, Pellegrini M, Jacobsen SE. PMID: 18278030; PMCID: PMC2377394.
      View in: PubMed   Mentions: 922     Fields:    Translation:AnimalsCells
    118. Dynamic regulation of ARGONAUTE4 within multiple nuclear bodies in Arabidopsis thaliana. PLoS Genet. 2008 Feb; 4(2):e27. Li CF, Henderson IR, Song L, Fedoroff N, Lagrange T, Jacobsen SE. PMID: 18266474; PMCID: PMC2233678.
      View in: PubMed   Mentions: 39     Fields:    Translation:AnimalsCells
    119. Promoter methylation study of the H37/RBM5 tumor suppressor gene from the 3p21.3 human lung cancer tumor suppressor locus. Hum Genet. 2008 Feb; 123(1):55-64. Oh JJ, Boctor BN, Jimenez CA, Lopez R, Koegel AK, Taschereau EO, Phan DT, Jacobsen SE, Slamon DJ. PMID: 18038152.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    120. Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components. Genes Dev. 2007 Oct 15; 21(20):2539-44. El-Shami M, Pontier D, Lahmy S, Braun L, Picart C, Vega D, Hakimi MA, Jacobsen SE, Cooke R, Lagrange T. PMID: 17938239; PMCID: PMC2000319.
      View in: PubMed   Mentions: 152     Fields:    Translation:HumansAnimalsCells
    121. The Arabidopsis LHP1 protein colocalizes with histone H3 Lys27 trimethylation. Nat Struct Mol Biol. 2007 Sep; 14(9):869-71. Zhang X, Germann S, Blus BJ, Khorasanizadeh S, Gaudin V, Jacobsen SE. PMID: 17676062.
      View in: PubMed   Mentions: 135     Fields:    Translation:AnimalsCells
    122. UHRF1 plays a role in maintaining DNA methylation in mammalian cells. Science. 2007 Sep 21; 317(5845):1760-4. Bostick M, Kim JK, Estève PO, Clark A, Pradhan S, Jacobsen SE. PMID: 17673620.
      View in: PubMed   Mentions: 580     Fields:    Translation:HumansAnimalsCells
    123. Epigenetic inheritance in plants. Nature. 2007 May 24; 447(7143):418-24. Henderson IR, Jacobsen SE. PMID: 17522675.
      View in: PubMed   Mentions: 308     Fields:    Translation:AnimalsCells
    124. Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis. PLoS Biol. 2007 May; 5(5):e129. Zhang X, Clarenz O, Cokus S, Bernatavichute YV, Pellegrini M, Goodrich J, Jacobsen SE. PMID: 17439305; PMCID: PMC1852588.
      View in: PubMed   Mentions: 312     Fields:    Translation:AnimalsCells
    125. Role of RNA polymerase IV in plant small RNA metabolism. Proc Natl Acad Sci U S A. 2007 Mar 13; 104(11):4536-41. Zhang X, Henderson IR, Lu C, Green PJ, Jacobsen SE. PMID: 17360559; PMCID: PMC1810338.
      View in: PubMed   Mentions: 128     Fields:    Translation:AnimalsCells
    126. The SRA methyl-cytosine-binding domain links DNA and histone methylation. Curr Biol. 2007 Feb 20; 17(4):379-84. Johnson LM, Bostick M, Zhang X, Kraft E, Henderson I, Callis J, Jacobsen SE. PMID: 17239600; PMCID: PMC1850948.
      View in: PubMed   Mentions: 183     Fields:    Translation:AnimalsCells
    127. Two-step recruitment of RNA-directed DNA methylation to tandem repeats. PLoS Biol. 2006 Nov; 4(11):e363. Chan SW, Zhang X, Bernatavichute YV, Jacobsen SE. PMID: 17105345; PMCID: PMC1618421.
      View in: PubMed   Mentions: 75     Fields:    Translation:AnimalsCells
    128. Plant genetics: increased outcrossing in hothead mutants. Nature. 2006 Sep 28; 443(7110):E8; discussion E8-9. Peng P, Chan SW, Shah GA, Jacobsen SE. PMID: 17006468.
      View in: PubMed   Mentions: 9     Fields:    Translation:Animals
    129. MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant. Genome Res. 2006 Oct; 16(10):1276-88. Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC. PMID: 16954541; PMCID: PMC1581437.
      View in: PubMed   Mentions: 164     Fields:    Translation:AnimalsCells
    130. Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell. 2006 Sep 22; 126(6):1189-201. Zhang X, Yazaki J, Sundaresan A, Cokus S, Chan SW, Chen H, Henderson IR, Shinn P, Pellegrini M, Jacobsen SE, Ecker JR. PMID: 16949657.
      View in: PubMed   Mentions: 752     Fields:    Translation:AnimalsCells
    131. The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center. Cell. 2006 Jul 14; 126(1):79-92. Pontes O, Li CF, Costa Nunes P, Haag J, Ream T, Vitins A, Jacobsen SE, Pikaard CS. PMID: 16839878.
      View in: PubMed   Mentions: 203     Fields:    Translation:AnimalsCells
    132. An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana. Cell. 2006 Jul 14; 126(1):93-106. Li CF, Pontes O, El-Shami M, Henderson IR, Bernatavichute YV, Chan SW, Lagrange T, Pikaard CS, Jacobsen SE. PMID: 16839879.
      View in: PubMed   Mentions: 176     Fields:    Translation:AnimalsCells
    133. RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in arabidopsis. PLoS Genet. 2006 Jun 02; 2(6):e83. Chan SW, Henderson IR, Zhang X, Shah G, Chien JS, Jacobsen SE. PMID: 16741558; PMCID: PMC1472700.
      View in: PubMed   Mentions: 107     Fields:    Translation:AnimalsCells
    134. Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nat Genet. 2006 Jun; 38(6):721-5. Henderson IR, Zhang X, Lu C, Johnson L, Meyers BC, Green PJ, Jacobsen SE. PMID: 16699516.
      View in: PubMed   Mentions: 283     Fields:    Translation:Cells
    135. LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC. Proc Natl Acad Sci U S A. 2006 Mar 28; 103(13):5012-7. Mylne JS, Barrett L, Tessadori F, Mesnage S, Johnson L, Bernatavichute YV, Jacobsen SE, Fransz P, Dean C. PMID: 16549797; PMCID: PMC1458786.
      View in: PubMed   Mentions: 89     Fields:    Translation:AnimalsCells
    136. Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2. Science. 2006 Jan 20; 311(5759):395-8. Goll MG, Kirpekar F, Maggert KA, Yoder JA, Hsieh CL, Zhang X, Golic KG, Jacobsen SE, Bestor TH. PMID: 16424344.
      View in: PubMed   Mentions: 403     Fields:    Translation:HumansAnimalsCells
    137. Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis. Genome Biol. 2005; 6(11):R90. Tran RK, Zilberman D, de Bustos C, Ditt RF, Henikoff JG, Lindroth AM, Delrow J, Boyle T, Kwong S, Bryson TD, Jacobsen SE, Henikoff S. PMID: 16277745; PMCID: PMC1297646.
      View in: PubMed   Mentions: 45     Fields:    Translation:AnimalsCells
    138. Gardening the genome: DNA methylation in Arabidopsis thaliana. Nat Rev Genet. 2005 May; 6(5):351-60. Chan SW, Henderson IR, Jacobsen SE. PMID: 15861207.
      View in: PubMed   Mentions: 348     Fields:    Translation:AnimalsCells
    139. DDM1 binds Arabidopsis methyl-CpG binding domain proteins and affects their subnuclear localization. Plant Cell. 2005 May; 17(5):1549-58. Zemach A, Li Y, Wayburn B, Ben-Meir H, Kiss V, Avivi Y, Kalchenko V, Jacobsen SE, Grafi G. PMID: 15805479; PMCID: PMC1091773.
      View in: PubMed   Mentions: 34     Fields:    Translation:AnimalsCells
    140. DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes. Curr Biol. 2005 Jan 26; 15(2):154-9. Tran RK, Henikoff JG, Zilberman D, Ditt RF, Jacobsen SE, Henikoff S. PMID: 15668172.
      View in: PubMed   Mentions: 93     Fields:    Translation:AnimalsCells
    141. Mass spectrometry analysis of Arabidopsis histone H3 reveals distinct combinations of post-translational modifications. Nucleic Acids Res. 2004; 32(22):6511-8. Johnson L, Mollah S, Garcia BA, Muratore TL, Shabanowitz J, Hunt DF, Jacobsen SE. PMID: 15598823; PMCID: PMC545460.
      View in: PubMed   Mentions: 80     Fields:    Translation:Cells
    142. Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3. EMBO J. 2004 Oct 27; 23(21):4286-96. Lindroth AM, Shultis D, Jasencakova Z, Fuchs J, Johnson L, Schubert D, Patnaik D, Pradhan S, Goodrich J, Schubert I, Jenuwein T, Khorasanizadeh S, Jacobsen SE. PMID: 15457214; PMCID: PMC524394.
      View in: PubMed   Mentions: 145     Fields:    Translation:HumansAnimalsCells
    143. Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats. Curr Biol. 2004 Jul 13; 14(13):1214-20. Zilberman D, Cao X, Johansen LK, Xie Z, Carrington JC, Jacobsen SE. PMID: 15242620.
      View in: PubMed   Mentions: 107     Fields:    Translation:AnimalsCells
    144. Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana. Chromosoma. 2004 Mar; 112(6):308-15. Jackson JP, Johnson L, Jasencakova Z, Zhang X, PerezBurgos L, Singh PB, Cheng X, Schubert I, Jenuwein T, Jacobsen SE. PMID: 15014946.
      View in: PubMed   Mentions: 130     Fields:    Translation:AnimalsCells
    145. RNA silencing genes control de novo DNA methylation. Science. 2004 Feb 27; 303(5662):1336. Chan SW, Zilberman D, Xie Z, Johansen LK, Carrington JC, Jacobsen SE. PMID: 14988555.
      View in: PubMed   Mentions: 213     Fields:    Translation:AnimalsCells
    146. Genetic and functional diversification of small RNA pathways in plants. PLoS Biol. 2004 May; 2(5):E104. Xie Z, Johansen LK, Gustafson AM, Kasschau KD, Lellis AD, Zilberman D, Jacobsen SE, Carrington JC. PMID: 15024409; PMCID: PMC350667.
      View in: PubMed   Mentions: 629     Fields:    Translation:AnimalsCells
    147. Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation. Curr Biol. 2003 Dec 16; 13(24):2212-7. Cao X, Aufsatz W, Zilberman D, Mette MF, Huang MS, Matzke M, Jacobsen SE. PMID: 14680640.
      View in: PubMed   Mentions: 198     Fields:    Translation:AnimalsCells
    148. One-way control of FWA imprinting in Arabidopsis endosperm by DNA methylation. Science. 2004 Jan 23; 303(5657):521-3. Kinoshita T, Miura A, Choi Y, Kinoshita Y, Cao X, Jacobsen SE, Fischer RL, Kakutani T. PMID: 14631047.
      View in: PubMed   Mentions: 203     Fields:    Translation:AnimalsCells
    149. Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis. Curr Biol. 2003 Mar 04; 13(5):421-6. Kato M, Miura A, Bender J, Jacobsen SE, Kakutani T. PMID: 12620192.
      View in: PubMed   Mentions: 120     Fields:    Translation:AnimalsCells
    150. ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science. 2003 Jan 31; 299(5607):716-9. Zilberman D, Cao X, Jacobsen SE. PMID: 12522258.
      View in: PubMed   Mentions: 421     Fields:    Translation:AnimalsCells
    151. DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis. EMBO J. 2002 Dec 02; 21(23):6549-59. Soppe WJ, Jasencakova Z, Houben A, Kakutani T, Meister A, Huang MS, Jacobsen SE, Schubert I, Fransz PF. PMID: 12456661; PMCID: PMC136960.
      View in: PubMed   Mentions: 173     Fields:    Translation:AnimalsCells
    152. DICER-LIKE1: blind men and elephants in Arabidopsis development. Trends Plant Sci. 2002 Nov; 7(11):487-91. Schauer SE, Jacobsen SE, Meinke DW, Ray A. PMID: 12417148.
      View in: PubMed   Mentions: 179     Fields:    Translation:Animals
    153. Interplay between two epigenetic marks. DNA methylation and histone H3 lysine 9 methylation. Curr Biol. 2002 Aug 20; 12(16):1360-7. Johnson L, Cao X, Jacobsen S. PMID: 12194816.
      View in: PubMed   Mentions: 201     Fields:    Translation:AnimalsCells
    154. Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes. Proc Natl Acad Sci U S A. 2002 Dec 10; 99 Suppl 4:16491-8. Cao X, Jacobsen SE. PMID: 12151602; PMCID: PMC139913.
      View in: PubMed   Mentions: 231     Fields:    Translation:HumansAnimalsCells
    155. DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in arabidopsis. Cell. 2002 Jul 12; 110(1):33-42. Choi Y, Gehring M, Johnson L, Hannon M, Harada JJ, Goldberg RB, Jacobsen SE, Fischer RL. PMID: 12150995.
      View in: PubMed   Mentions: 272     Fields:    Translation:HumansAnimalsCells
    156. Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing. Curr Biol. 2002 Jul 09; 12(13):1138-44. Cao X, Jacobsen SE. PMID: 12121623.
      View in: PubMed   Mentions: 324     Fields:    Translation:AnimalsCells
    157. Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase. Nature. 2002 Apr 04; 416(6880):556-60. Jackson JP, Lindroth AM, Cao X, Jacobsen SE. PMID: 11898023.
      View in: PubMed   Mentions: 436     Fields:    Translation:HumansAnimalsCells
    158. Ectopic hypermethylation of flower-specific genes in Arabidopsis. Curr Biol. 2000 Feb 24; 10(4):179-86. Jacobsen SE, Sakai H, Finnegan EJ, Cao X, Meyerowitz EM. PMID: 10704409.
      View in: PubMed   Mentions: 86     Fields:    Translation:AnimalsCells
    159. Disruption of an RNA helicase/RNAse III gene in Arabidopsis causes unregulated cell division in floral meristems. Development. 1999 Dec; 126(23):5231-43. Jacobsen SE, Running MP, Meyerowitz EM. PMID: 10556049.
      View in: PubMed   Mentions: 142     Fields:    Translation:AnimalsCells
    Steven's Networks
    Concepts (399)
    Derived automatically from this person's publications.
    _
    Co-Authors (19)
    People in Profiles who have published with this person.
    _
    Similar People (60)
    People who share similar concepts with this person.
    _
    Same Department
    Search Department
    _