Steven Erik Jacobsen

Title(s)Professor, Molecular, Cell and Developmental Biology
SchoolCollege of Letters and Science
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    Other Positions
    Title(s)Professor, Biological Chemistry


    Collapse Biography 
    Collapse Education and Training
    Caltech, Pasadena, CAPostdoctoral06/1998Developmental Biology
    University of Minnesota, St. Paul, MNPhD09/1993Plant Biology

    Collapse Overview 
    Collapse Overview
    Dr. Jacobsen studies mechanisms of epigenetic inheritance and gene regulation in both the model plant Arabidopsis thaliana and in mammalian stem cells. Our research involves genetic screens, genomics, epigenomics, and biochemistry. We also develop novel methods for CRISPR mediated genome editing.

    Collapse Research 
    Collapse Research Activities and Funding
    Epigenetic gene regulation in Arabidopsis
    NIH R35GM130272Feb 1, 2019 - Jan 31, 2024
    Role: Principal Investigator
    Howard Hughes Medical Institute Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. α-Crystalline Domains and Intrinsically Disordered Regions Can Work in Parallel to Induce Accumulation of MBD6 at Chromocenters in Arabidopsis thaliana. Epigenomes. 2024 Aug 28; 8(3). Boone BA, Mendoza CP, Behrendt NJ, Jacobsen SE. PMID: 39311135; PMCID: PMC11417779.
      View in: PubMed   Mentions:
    2. Enhancers associated with unstable RNAs are rare in plants. Nat Plants. 2024 08; 10(8):1246-1257. McDonald BR, Picard CL, Brabb IM, Savenkova MI, Schmitz RJ, Jacobsen SE, Duttke SH. PMID: 39080503; PMCID: PMC11335568.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    3. H1 restricts euchromatin-associated methylation pathways from heterochromatic encroachment. Elife. 2024 May 30; 12. Harris CJ, Zhong Z, Ichino L, Feng S, Jacobsen SE. PMID: 38814684; PMCID: PMC11139477.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    4. H1 restricts euchromatin-associated methylation pathways from heterochromatic encroachment. bioRxiv. 2024 Mar 05. Harris CJ, Zhong Z, Ichino L, Feng S, Jacobsen SE. PMID: 37214879; PMCID: PMC10197610.
      View in: PubMed   Mentions:
    5. MBD2 couples DNA methylation to transposable element silencing during male gametogenesis. Nat Plants. 2024 01; 10(1):13-24. Wang S, Wang M, Ichino L, Boone BA, Zhong Z, Papareddy RK, Lin EK, Yun J, Feng S, Jacobsen SE. PMID: 38225352; PMCID: PMC10808059.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    6. Eukaryotic RNA-guided endonucleases evolved from a unique clade of bacterial enzymes. Nucleic Acids Res. 2023 Dec 11; 51(22):12414-12427. Yoon PH, Skopintsev P, Shi H, Chen L, Adler BA, Al-Shimary M, Craig RJ, Loi KJ, DeTurk EC, Li Z, Amerasekera J, Trinidad M, Nisonoff H, Chen K, Lahiri A, Boger R, Jacobsen S, Banfield JF, Doudna JA. PMID: 37971304; PMCID: PMC10711439.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    7. H3.1K27me1 loss confers Arabidopsis resistance to Geminivirus by sequestering DNA repair proteins onto host genome. Nat Commun. 2023 11 18; 14(1):7484. Wang Z, Castillo-González CM, Zhao C, Tong CY, Li C, Zhong S, Liu Z, Xie K, Zhu J, Wu Z, Peng X, Jacob Y, Michaels SD, Jacobsen SE, Zhang X. PMID: 37980416; PMCID: PMC10657422.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    8. ACD15, ACD21, and SLN regulate the accumulation and mobility of MBD6 to silence genes and transposable elements. Sci Adv. 2023 11 17; 9(46):eadi9036. Boone BA, Ichino L, Wang S, Gardiner J, Yun J, Jami-Alahmadi Y, Sha J, Mendoza CP, Steelman BJ, van Aardenne A, Kira-Lucas S, Trentchev I, Wohlschlegel JA, Jacobsen SE. PMID: 37967186; PMCID: PMC10651127.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    9. Genome Mining from Agriculturally Relevant Fungi Led to a d-Glucose Esterified Polyketide with a Terpene-like Core Structure. J Am Chem Soc. 2023 11 22; 145(46):25080-25085. Yan C, Han W, Zhou Q, Niwa K, Tang MJ, Burch JE, Zhang Y, Delgadillo DA, Sun Z, Wu Z, Jacobsen SE, Nelson H, Houk KN, Tang Y. PMID: 37948671; PMCID: PMC10682982.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    10. ACD15, ACD21 and SLN regulate accumulation and mobility of MBD6 to silence genes and transposable elements. bioRxiv. 2023 Oct 06. Boone BA, Ichino L, Wang S, Gardiner J, Yun J, Jami-Alahmadi Y, Sha J, Mendoza CP, Steelman BJ, van Aardenne A, Kira-Lucas S, Trentchev I, Wohlschlegel JA, Jacobsen SE. PMID: 37662299; PMCID: PMC10473691.
      View in: PubMed   Mentions:
    11. Enhancers associated with unstable RNAs are rare in plants. bioRxiv. 2023 Sep 25. Mcdonald BR, Picard C, Brabb IM, Savenkova MI, Schmitz RJ, Jacobsen SE, Duttke SH. PMID: 37808859; PMCID: PMC10557634.
      View in: PubMed   Mentions:
    12. A maternally programmed intergenerational mechanism enables male offspring to make piRNAs from Y-linked precursor RNAs in Drosophila. Nat Cell Biol. 2023 Oct; 25(10):1495-1505. Venkei ZG, Gainetdinov I, Bagci A, Starostik MR, Choi CP, Fingerhut JM, Chen P, Balsara C, Whitfield TW, Bell GW, Feng S, Jacobsen SE, Aravin AA, Kim JK, Zamore PD, Yamashita YM. PMID: 37723298; PMCID: PMC10567549.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    13. Eukaryotic RNA-guided endonucleases evolved from a unique clade of bacterial enzymes. bioRxiv. 2023 Aug 10. Yoon PH, Skopintsev P, Shi H, Chen LX, Adler BA, Al-Shimary M, Craig RJ, Li Z, Amerasekera J, Trinidad M, Nisonoff H, Chen K, Lahiri A, Boger R, Jacobsen S, Banfield JF, Doudna JA. PMID: 37609353; PMCID: PMC10441404.
      View in: PubMed   Mentions:
    14. Assessing the Biosynthetic Inventory of the Biocontrol Fungus Trichoderma afroharzianum T22. J Agric Food Chem. 2023 Aug 02; 71(30):11502-11519. Han W, Wu Z, Zhong Z, Williams J, Jacobsen SE, Sun Z, Tang Y. PMID: 37471583.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    15. The MOM1 complex recruits the RdDM machinery via MORC6 to establish de novo DNA methylation. Nat Commun. 2023 07 12; 14(1):4135. Li Z, Wang M, Zhong Z, Gallego-Bartolomé J, Feng S, Jami-Alahmadi Y, Wang X, Wohlschlegel J, Bischof S, Long JA, Jacobsen SE. PMID: 37438334; PMCID: PMC10338684.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    16. Structural Analysis of Non-native Peptide-Based Catalysts Using 2D NMR-Guided MD Simulations. J Phys Chem A. 2023 Jul 06; 127(26):5602-5608. Parkman JA, Barlow CD, Sheppert AP, Jacobsen S, Barksdale CA, Wayment AX, Newton MP, Burt SR, Michaelis DJ. PMID: 37347770; PMCID: PMC10722561.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    17. MORC proteins regulate transcription factor binding by mediating chromatin compaction in active chromatin regions. Genome Biol. 2023 04 26; 24(1):96. Zhong Z, Xue Y, Harris CJ, Wang M, Li Z, Ke Y, Liu M, Zhou J, Jami-Alahmadi Y, Feng S, Wohlschlegel JA, Jacobsen SE. PMID: 37101218; PMCID: PMC10131428.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    18. Arabidopsis TRB proteins function in H3K4me3 demethylation by recruiting JMJ14. Nat Commun. 2023 03 28; 14(1):1736. Wang M, Zhong Z, Gallego-Bartolomé J, Feng S, Shih YH, Liu M, Zhou J, Richey JC, Ng C, Jami-Alahmadi Y, Wohlschlegel J, Wu K, Jacobsen SE. PMID: 36977663; PMCID: PMC10049986.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    19. Structure and mechanism of the plant RNA polymerase V. Science. 2023 03 24; 379(6638):1209-1213. Xie G, Du X, Hu H, Li S, Cao X, Jacobsen SE, Du J. PMID: 36893216; PMCID: PMC10041816.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    20. A gene silencing screen uncovers diverse tools for targeted gene repression in Arabidopsis. Nat Plants. 2023 03; 9(3):460-472. Wang M, Zhong Z, Gallego-Bartolomé J, Li Z, Feng S, Kuo HY, Kan RL, Lam H, Richey JC, Tang L, Zhou J, Liu M, Jami-Alahmadi Y, Wohlschlegel J, Jacobsen SE. PMID: 36879017; PMCID: PMC10027610.
      View in: PubMed   Mentions: 6     Fields:    Translation:Animals
    21. Genome editing in plants using the compact editor CasΦ. Proc Natl Acad Sci U S A. 2023 01 24; 120(4):e2216822120. Li Z, Zhong Z, Wu Z, Pausch P, Al-Shayeb B, Amerasekera J, Doudna JA, Jacobsen SE. PMID: 36652483; PMCID: PMC9942878.
      View in: PubMed   Mentions: 10     Fields:    Translation:Animals
    22. The MOM1 complex recruits the RdDM machinery via MORC6 to establish de novo DNA methylation. bioRxiv. 2023 Jan 10. Li Z, Wang M, Zhong Z, Gallego-Bartolomé J, Feng S, Jami-Alahmadi Y, Wang X, Wohlschlegel J, Bischof S, Long JA, Jacobsen SE. PMID: 36711532; PMCID: PMC9882083.
      View in: PubMed   Mentions:
    23. Improving cassava bacterial blight resistance by editing the epigenome. Nat Commun. 2023 01 05; 14(1):85. Veley KM, Elliott K, Jensen G, Zhong Z, Feng S, Yoder M, Gilbert KB, Berry JC, Lin ZD, Ghoshal B, Gallego-Bartolomé J, Norton J, Motomura-Wages S, Carrington JC, Jacobsen SE, Bart RS. PMID: 36604425; PMCID: PMC9816117.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    24. Haplotype-resolved DNA methylome of African cassava genome. Plant Biotechnol J. 2023 02; 21(2):247-249. Zhong Z, Feng S, Mansfeld BN, Ke Y, Qi W, Lim YW, Gruissem W, Bart RS, Jacobsen SE. PMID: 36318278; PMCID: PMC9884013.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    25. Diverse virus-encoded CRISPR-Cas systems include streamlined genome editors. Cell. 2022 11 23; 185(24):4574-4586.e16. Al-Shayeb B, Skopintsev P, Soczek KM, Stahl EC, Li Z, Groover E, Smock D, Eggers AR, Pausch P, Cress BF, Huang CJ, Staskawicz B, Savage DF, Jacobsen SE, Banfield JF, Doudna JA. PMID: 36423580.
      View in: PubMed   Mentions: 35     Fields:    Translation:HumansAnimalsCells
    26. Single-nucleus RNA-seq reveals that MBD5, MBD6, and SILENZIO maintain silencing in the vegetative cell of developing pollen. Cell Rep. 2022 11 22; 41(8):111699. Ichino L, Picard CL, Yun J, Chotai M, Wang S, Lin EK, Papareddy RK, Xue Y, Jacobsen SE. PMID: 36417865; PMCID: PMC9770095.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    27. Histone chaperone ASF1 mediates H3.3-H4 deposition in Arabidopsis. Nat Commun. 2022 11 15; 13(1):6970. Zhong Z, Wang Y, Wang M, Yang F, Thomas QA, Xue Y, Zhang Y, Liu W, Jami-Alahmadi Y, Xu L, Feng S, Marquardt S, Wohlschlegel JA, Ausin I, Jacobsen SE. PMID: 36379930; PMCID: PMC9666630.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    28. Mutations in DNA polymerase δ subunit 1 co-segregate with CMD2-type resistance to Cassava Mosaic Geminiviruses. Nat Commun. 2022 07 07; 13(1):3933. Lim YW, Mansfeld BN, Schläpfer P, Gilbert KB, Narayanan NN, Qi W, Wang Q, Zhong Z, Boyher A, Gehan J, Beyene G, Lin ZD, Esuma W, Feng S, Chanez C, Eggenberger N, Adiga G, Alicai T, Jacobsen SE, Taylor NJ, Gruissem W, Bart RS. PMID: 35798722; PMCID: PMC9262879.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    29. Comprehensive identification of SWI/SNF complex subunits underpins deep eukaryotic ancestry and reveals new plant components. Commun Biol. 2022 06 06; 5(1):549. Hernández-García J, Diego-Martin B, Kuo PH, Jami-Alahmadi Y, Vashisht AA, Wohlschlegel J, Jacobsen SE, Blázquez MA, Gallego-Bartolomé J. PMID: 35668117; PMCID: PMC9170682.
      View in: PubMed   Mentions: 17  Translation:AnimalsCells
    30. A SYBR Gold-based Label-free in vitro Dicing Assay. Bio Protoc. 2022 Apr 05; 12(7):e4382. Wang Q, Xue Y, Zhang L, Zhong Z, Feng S, Wang C, Xiao L, Yang Z, Harris JC, Wu Z, Zhai J, Yang M, Li S, Jacobsen SE, Du J. PMID: 35530519; PMCID: PMC9018436.
      View in: PubMed   Mentions: 1  
    31. CRISPR-Cas-mediated transcriptional control and epi-mutagenesis. Plant Physiol. 2022 03 28; 188(4):1811-1824. Gardiner J, Ghoshal B, Wang M, Jacobsen SE. PMID: 35134247; PMCID: PMC8968285.
      View in: PubMed   Mentions: 9     Fields:    
    32. The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis. Proc Natl Acad Sci U S A. 2022 01 18; 119(3). Potok ME, Zhong Z, Picard CL, Liu Q, Do T, Jacobsen CE, Sakr O, Naranbaatar B, Thilakaratne R, Khnkoyan Z, Purl M, Cheng H, Vervaet H, Feng S, Rayatpisheh S, Wohlschlegel JA, O'Malley RC, Ecker JR, Jacobsen SE. PMID: 35027454; PMCID: PMC8784105.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    33. The role of MORC3 in silencing transposable elements in mouse embryonic stem cells. Epigenetics Chromatin. 2021 10 27; 14(1):49. Desai VP, Chouaref J, Wu H, Pastor WA, Kan RL, Oey HM, Li Z, Ho J, Vonk KKD, San Leon Granado D, Christopher MA, Clark AT, Jacobsen SE, Daxinger L. PMID: 34706774; PMCID: PMC8555065.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    34. Mechanism of siRNA production by a plant Dicer-RNA complex in dicing-competent conformation. Science. 2021 Nov 26; 374(6571):1152-1157. Wang Q, Xue Y, Zhang L, Zhong Z, Feng S, Wang C, Xiao L, Yang Z, Harris CJ, Wu Z, Zhai J, Yang M, Li S, Jacobsen SE, Du J. PMID: 34648373; PMCID: PMC8682726.
      View in: PubMed   Mentions: 40     Fields:    Translation:AnimalsCells
    35. MORC3, a novel MIWI2 association partner, as an epigenetic regulator of piRNA dependent transposon silencing in male germ cells. Sci Rep. 2021 10 14; 11(1):20472. Kojima-Kita K, Kuramochi-Miyagawa S, Nakayama M, Miyata H, Jacobsen SE, Ikawa M, Koseki H, Nakano T. PMID: 34650118; PMCID: PMC8516955.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    36. Plant genome engineering from lab to field-a Keystone Symposia report. Ann N Y Acad Sci. 2021 12; 1506(1):35-54. Cable J, Ronald PC, Voytas D, Zhang F, Levy AA, Takatsuka A, Arimura SI, Jacobsen SE, Toki S, Toda E, Gao C, Zhu JK, Boch J, Van Eck J, Mahfouz M, Andersson M, Fridman E, Weiss T, Wang K, Qi Y, Jores T, Adams T, Bagchi R. PMID: 34435370.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    37. Arabidopsis MORC proteins function in the efficient establishment of RNA directed DNA methylation. Nat Commun. 2021 07 13; 12(1):4292. Xue Y, Zhong Z, Harris CJ, Gallego-Bartolomé J, Wang M, Picard C, Cao X, Hua S, Kwok I, Feng S, Jami-Alahmadi Y, Sha J, Gardiner J, Wohlschlegel J, Jacobsen SE. PMID: 34257299; PMCID: PMC8277788.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    38. CRISPR-based targeting of DNA methylation in Arabidopsis thaliana by a bacterial CG-specific DNA methyltransferase. Proc Natl Acad Sci U S A. 2021 06 08; 118(23). Ghoshal B, Picard CL, Vong B, Feng S, Jacobsen SE. PMID: 34074795; PMCID: PMC8201958.
      View in: PubMed   Mentions: 25     Fields:    Translation:AnimalsCells
    39. MBD5 and MBD6 couple DNA methylation to gene silencing through the J-domain protein SILENZIO. Science. 2021 Jun 03. Ichino L, Boone BA, Strauskulage L, Harris CJ, Kaur G, Gladstone MA, Tan M, Feng S, Jami-Alahmadi Y, Duttke SH, Wohlschlegel JA, Cheng X, Redding S, Jacobsen SE. PMID: 34083448; PMCID: PMC8639832.
      View in: PubMed   Mentions: 27     Fields:    
    40. Ectopic targeting of CG DNA methylation in Arabidopsis with the bacterial SssI methyltransferase. Nat Commun. 2021 05 25; 12(1):3130. Liu W, Gallego-Bartolomé J, Zhou Y, Zhong Z, Wang M, Wongpalee SP, Gardiner J, Feng S, Kuo PH, Jacobsen SE. PMID: 34035251; PMCID: PMC8149686.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    41. The histone variant H2A.W and linker histone H1 co-regulate heterochromatin accessibility and DNA methylation. Nat Commun. 2021 05 11; 12(1):2683. Bourguet P, Picard CL, Yelagandula R, Pélissier T, Lorkovic ZJ, Feng S, Pouch-Pélissier MN, Schmücker A, Jacobsen SE, Berger F, Mathieu O. PMID: 33976212; PMCID: PMC8113232.
      View in: PubMed   Mentions: 38     Fields:    Translation:AnimalsCells
    42. Whole-genome characterization of chronological age-associated changes in methylome and circular RNAs in moso bamboo (Phyllostachys edulis) from vegetative to floral growth. Plant J. 2021 04; 106(2):435-453. Zhang Z, Wang H, Wang Y, Xi F, Wang H, Kohnen MV, Gao P, Wei W, Chen K, Liu X, Gao Y, Han X, Hu K, Zhang H, Zhu Q, Zheng Y, Liu B, Ahmad A, Hsu YH, Jacobsen SE, Gu L. PMID: 33506534.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    43. SNPC-1.3 is a sex-specific transcription factor that drives male piRNA expression in C. elegans. Elife. 2021 02 15; 10. Choi CP, Tay RJ, Starostik MR, Feng S, Moresco JJ, Montgomery BE, Xu E, Hammonds MA, Schatz MC, Montgomery TA, Yates JR, Jacobsen SE, Kim JK. PMID: 33587037; PMCID: PMC7884074.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    44. DNA methylation-linked chromatin accessibility affects genomic architecture in Arabidopsis. Proc Natl Acad Sci U S A. 2021 02 02; 118(5). Zhong Z, Feng S, Duttke SH, Potok ME, Zhang Y, Gallego-Bartolomé J, Liu W, Jacobsen SE. PMID: 33495321; PMCID: PMC7865151.
      View in: PubMed   Mentions: 42     Fields:    Translation:AnimalsCells
    45. A viral guide RNA delivery system for CRISPR-based transcriptional activation and heritable targeted DNA demethylation in Arabidopsis thaliana. PLoS Genet. 2020 Dec; 16(12):e1008983. Ghoshal B, Vong B, Picard CL, Feng S, Tam JM, Jacobsen SE. PMID: 33315895; PMCID: PMC7769603.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    46. DNA polymerase epsilon is required for heterochromatin maintenance in Arabidopsis. Genome Biol. 2020 11 25; 21(1):283. Bourguet P, López-González L, Gómez-Zambrano Á, Pélissier T, Hesketh A, Potok ME, Pouch-Pélissier MN, Perez M, Da Ines O, Latrasse D, White CI, Jacobsen SE, Benhamed M, Mathieu O. PMID: 33234150; PMCID: PMC7687843.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    47. Efficient and accurate determination of genome-wide DNA methylation patterns in Arabidopsis thaliana with enzymatic methyl sequencing. Epigenetics Chromatin. 2020 10 07; 13(1):42. Feng S, Zhong Z, Wang M, Jacobsen SE. PMID: 33028374; PMCID: PMC7542392.
      View in: PubMed   Mentions: 35     Fields:    Translation:AnimalsCells
    48. CRISPR-CasΦ from huge phages is a hypercompact genome editor. Science. 2020 07 17; 369(6501):333-337. Pausch P, Al-Shayeb B, Bisom-Rapp E, Tsuchida CA, Li Z, Cress BF, Knott GJ, Jacobsen SE, Banfield JF, Doudna JA. PMID: 32675376; PMCID: PMC8207990.
      View in: PubMed   Mentions: 210     Fields:    Translation:Cells
    49. Promoter and Terminator Optimization for DNA Methylation Targeting in Arabidopsis. Epigenomes. 2020 Jun 12; 4(2). Gardiner J, Zhao JM, Chaffin K, Jacobsen SE. PMID: 34968243; PMCID: PMC8594676.
      View in: PubMed   Mentions: 1  
    50. NAP1-RELATED PROTEIN1 and 2 negatively regulate H2A.Z abundance in chromatin in Arabidopsis. Nat Commun. 2020 06 08; 11(1):2887. Wang Y, Zhong Z, Zhang Y, Xu L, Feng S, Rayatpisheh S, Wohlschlegel JA, Wang Z, Jacobsen SE, Ausin I. PMID: 32513971; PMCID: PMC7280298.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    51. The characterization of Mediator 12 and 13 as conditional positive gene regulators in Arabidopsis. Nat Commun. 2020 06 03; 11(1):2798. Liu Q, Bischof S, Harris CJ, Zhong Z, Zhan L, Nguyen C, Rashoff A, Barshop WD, Sun F, Feng S, Potok M, Gallego-Bartolome J, Zhai J, Wohlschlegel JA, Carey MF, Long JA, Jacobsen SE. PMID: 32493925; PMCID: PMC7271234.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    52. The plant mobile domain proteins MAIN and MAIL1 interact with the phosphatase PP7L to regulate gene expression and silence transposable elements in Arabidopsis thaliana. PLoS Genet. 2020 04; 16(4):e1008324. Nicolau M, Picault N, Descombin J, Jami-Alahmadi Y, Feng S, Bucher E, Jacobsen SE, Deragon JM, Wohlschlegel J, Moissiard G. PMID: 32287271; PMCID: PMC7156037.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    53. A kinesin Klp10A mediates cell cycle-dependent shuttling of Piwi between nucleus and nuage. PLoS Genet. 2020 03; 16(3):e1008648. Venkei ZG, Choi CP, Feng S, Chen C, Jacobsen SE, Kim JK, Yamashita YM. PMID: 32168327; PMCID: PMC7094869.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    54. CryoEM structures of Arabidopsis DDR complexes involved in RNA-directed DNA methylation. Nat Commun. 2019 09 02; 10(1):3916. Wongpalee SP, Liu S, Gallego-Bartolomé J, Leitner A, Aebersold R, Liu W, Yen L, Nohales MA, Kuo PH, Vashisht AA, Wohlschlegel JA, Feng S, Kay SA, Zhou ZH, Jacobsen SE. PMID: 31477705; PMCID: PMC6718625.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    55. The Gene-Silencing Protein MORC-1 Topologically Entraps DNA and Forms Multimeric Assemblies to Cause DNA Compaction. Mol Cell. 2019 08 22; 75(4):700-710.e6. Kim H, Yen L, Wongpalee SP, Kirshner JA, Mehta N, Xue Y, Johnston JB, Burlingame AL, Kim JK, Loparo JJ, Jacobsen SE. PMID: 31442422; PMCID: PMC6814019.
      View in: PubMed   Mentions: 27     Fields:    Translation:AnimalsCells
    56. Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. Nat Commun. 2019 07 26; 10(1):3352. Potok ME, Wang Y, Xu L, Zhong Z, Liu W, Feng S, Naranbaatar B, Rayatpisheh S, Wang Z, Wohlschlegel JA, Ausin I, Jacobsen SE. PMID: 31350403; PMCID: PMC6659704.
      View in: PubMed   Mentions: 31     Fields:    Translation:AnimalsCells
    57. Multi-level Modulation of Light Signaling by GIGANTEA Regulates Both the Output and Pace of the Circadian Clock. Dev Cell. 2019 06 17; 49(6):840-851.e8. Nohales MA, Liu W, Duffy T, Nozue K, Sawa M, Pruneda-Paz JL, Maloof JN, Jacobsen SE, Kay SA. PMID: 31105011; PMCID: PMC6597437.
      View in: PubMed   Mentions: 34     Fields:    Translation:AnimalsCells
    58. Genome mining and biosynthesis of a polyketide from a biofertilizer fungus that can facilitate reductive iron assimilation in plant. Proc Natl Acad Sci U S A. 2019 03 19; 116(12):5499-5504. Chen M, Liu Q, Gao SS, Young AE, Jacobsen SE, Tang Y. PMID: 30842286; PMCID: PMC6431147.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
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    122. Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants. Cell. 2012 Sep 28; 151(1):167-80. Du J, Zhong X, Bernatavichute YV, Stroud H, Feng S, Caro E, Vashisht AA, Terragni J, Chin HG, Tu A, Hetzel J, Wohlschlegel JA, Pradhan S, Patel DJ, Jacobsen SE. PMID: 23021223; PMCID: PMC3471781.
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    123. Features of the Arabidopsis recombination landscape resulting from the combined loss of sequence variation and DNA methylation. Proc Natl Acad Sci U S A. 2012 Oct 02; 109(40):16240-5. Colomé-Tatché M, Cortijo S, Wardenaar R, Morgado L, Lahouze B, Sarazin A, Etcheverry M, Martin A, Feng S, Duvernois-Berthet E, Labadie K, Wincker P, Jacobsen SE, Jansen RC, Colot V, Johannes F. PMID: 22988127; PMCID: PMC3479620.
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    124. DDR complex facilitates global association of RNA polymerase V to promoters and evolutionarily young transposons. Nat Struct Mol Biol. 2012 Sep; 19(9):870-5. Zhong X, Hale CJ, Law JA, Johnson LM, Feng S, Tu A, Jacobsen SE. PMID: 22864289; PMCID: PMC3443314.
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    125. Transcriptome and methylome interactions in rice hybrids. Proc Natl Acad Sci U S A. 2012 Jul 24; 109(30):12040-5. Chodavarapu RK, Feng S, Ding B, Simon SA, Lopez D, Jia Y, Wang GL, Meyers BC, Jacobsen SE, Pellegrini M. PMID: 22778444; PMCID: PMC3409791.
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    126. DNA methyltransferases are required to induce heterochromatic re-replication in Arabidopsis. PLoS Genet. 2012 Jul; 8(7):e1002808. Stroud H, Hale CJ, Feng S, Caro E, Jacob Y, Michaels SD, Jacobsen SE. PMID: 22792077; PMCID: PMC3390372.
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    127. A unified phylogeny-based nomenclature for histone variants. Epigenetics Chromatin. 2012 Jun 21; 5:7. Talbert PB, Ahmad K, Almouzni G, Ausió J, Berger F, Bhalla PL, Bonner WM, Cande WZ, Chadwick BP, Chan SW, Cross GA, Cui L, Dimitrov SI, Doenecke D, Eirin-López JM, Gorovsky MA, Hake SB, Hamkalo BA, Holec S, Jacobsen SE, Kamieniarz K, Khochbin S, Ladurner AG, Landsman D, Latham JA, Loppin B, Malik HS, Marzluff WF, Pehrson JR, Postberg J, Schneider R, Singh MB, Smith MM, Thompson E, Torres-Padilla ME, Tremethick DJ, Turner BM, Waterborg JH, Wollmann H, Yelagandula R, Zhu B, Henikoff S. PMID: 22650316; PMCID: PMC3380720.
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    128. INVOLVED IN DE NOVO 2-containing complex involved in RNA-directed DNA methylation in Arabidopsis. Proc Natl Acad Sci U S A. 2012 May 29; 109(22):8374-81. Ausin I, Greenberg MV, Simanshu DK, Hale CJ, Vashisht AA, Simon SA, Lee TF, Feng S, Española SD, Meyers BC, Wohlschlegel JA, Patel DJ, Jacobsen SE. PMID: 22592791; PMCID: PMC3365198.
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    129. MORC family ATPases required for heterochromatin condensation and gene silencing. Science. 2012 Jun 15; 336(6087):1448-51. Moissiard G, Cokus SJ, Cary J, Feng S, Billi AC, Stroud H, Husmann D, Zhan Y, Lajoie BR, McCord RP, Hale CJ, Feng W, Michaels SD, Frand AR, Pellegrini M, Dekker J, Kim JK, Jacobsen SE. PMID: 22555433; PMCID: PMC3376212.
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    130. Histone methyltransferases regulating rRNA gene dose and dosage control in Arabidopsis. Genes Dev. 2012 May 01; 26(9):945-57. Pontvianne F, Blevins T, Chandrasekhara C, Feng W, Stroud H, Jacobsen SE, Michaels SD, Pikaard CS. PMID: 22549957; PMCID: PMC3347792.
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    131. Opening the door to epigenetics in PCP. Plant Cell Physiol. 2012 May; 53(5):763-5. Kinoshita T, Jacobsen SE. PMID: 22566217; PMCID: PMC3530370.
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    132. Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana. Proc Natl Acad Sci U S A. 2012 Apr 03; 109(14):5370-5. Stroud H, Otero S, Desvoyes B, Ramírez-Parra E, Jacobsen SE, Gutierrez C. PMID: 22431625; PMCID: PMC3325649.
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    133. DNA methylation dynamics, metabolic fluxes, gene splicing, and alternative phenotypes in honey bees. Proc Natl Acad Sci U S A. 2012 Mar 27; 109(13):4968-73. Foret S, Kucharski R, Pellegrini M, Feng S, Jacobsen SE, Robinson GE, Maleszka R. PMID: 22416128; PMCID: PMC3324026.
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    134. Plant biology: Equal-parenting policy. Nature. 2012 Jan 22; 482(7383):42-4. Hale CJ, Jacobsen SE. PMID: 22266937.
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    135. The splicing factor SR45 affects the RNA-directed DNA methylation pathway in Arabidopsis. Epigenetics. 2012 Jan 01; 7(1):29-33. Ausin I, Greenberg MV, Li CF, Jacobsen SE. PMID: 22274613; PMCID: PMC3329499.
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    136. Association of plasma renin activity and aldosterone-renin ratio with prevalence of chronic kidney disease: the Kaiser Permanente Southern California cohort. J Hypertens. 2011 Nov; 29(11):2226-35. Sim JJ, Shi J, Calara F, Rasgon S, Jacobsen S, Kalantar-Zadeh K. PMID: 21941205.
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    137. SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV. PLoS Genet. 2011 Jul; 7(7):e1002195. Law JA, Vashisht AA, Wohlschlegel JA, Jacobsen SE. PMID: 21811420; PMCID: PMC3141008.
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    138. A comparative analysis of DNA methylation across human embryonic stem cell lines. Genome Biol. 2011 Jul 06; 12(7):R62. Chen PY, Feng S, Joo JW, Jacobsen SE, Pellegrini M. PMID: 21733148; PMCID: PMC3218824.
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    139. 5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells. Genome Biol. 2011 Jun 20; 12(6):R54. Stroud H, Feng S, Morey Kinney S, Pradhan S, Jacobsen SE. PMID: 21689397; PMCID: PMC3218842.
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    140. Tissue-specific distribution and dynamic changes of 5-hydroxymethylcytosine in mammalian genomes. J Biol Chem. 2011 Jul 15; 286(28):24685-93. Kinney SM, Chin HG, Vaisvila R, Bitinaite J, Zheng Y, Estève PO, Feng S, Stroud H, Jacobsen SE, Pradhan S. PMID: 21610077; PMCID: PMC3137044.
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    141. Identification of genes required for de novo DNA methylation in Arabidopsis. Epigenetics. 2011 Mar; 6(3):344-54. Greenberg MV, Ausin I, Chan SW, Cokus SJ, Cuperus JT, Feng S, Law JA, Chu C, Pellegrini M, Carrington JC, Jacobsen SE. PMID: 21150311; PMCID: PMC3092683.
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    142. Genome-wide mapping of Arabidopsis thaliana origins of DNA replication and their associated epigenetic marks. Nat Struct Mol Biol. 2011 Mar; 18(3):395-400. Costas C, de la Paz Sanchez M, Stroud H, Yu Y, Oliveros JC, Feng S, Benguria A, López-Vidriero I, Zhang X, Solano R, Jacobsen SE, Gutierrez C. PMID: 21297636; PMCID: PMC3079358.
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    143. A dual flip-out mechanism for 5mC recognition by the Arabidopsis SUVH5 SRA domain and its impact on DNA methylation and H3K9 dimethylation in vivo. Genes Dev. 2011 Jan 15; 25(2):137-52. Rajakumara E, Law JA, Simanshu DK, Voigt P, Johnson LM, Reinberg D, Patel DJ, Jacobsen SE. PMID: 21245167; PMCID: PMC3022260.
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    144. 6-Thioguanine reactivates epigenetically silenced genes in acute lymphoblastic leukemia cells by facilitating proteasome-mediated degradation of DNMT1. Cancer Res. 2011 Mar 01; 71(5):1904-11. Yuan B, Zhang J, Wang H, Xiong L, Cai Q, Wang T, Jacobsen S, Pradhan S, Wang Y. PMID: 21239472; PMCID: PMC3049985.
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    145. Epigenetic modifications in plants: an evolutionary perspective. Curr Opin Plant Biol. 2011 Apr; 14(2):179-86. Feng S, Jacobsen SE. PMID: 21233005; PMCID: PMC3097131.
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    146. Determining DNA methylation profiles using sequencing. Methods Mol Biol. 2011; 733:223-38. Feng S, Rubbi L, Jacobsen SE, Pellegrini M. PMID: 21431774.
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    147. Involvement of a Jumonji-C domain-containing histone demethylase in DRM2-mediated maintenance of DNA methylation. EMBO Rep. 2010 Dec; 11(12):950-5. Deleris A, Greenberg MV, Ausin I, Law RW, Moissiard G, Schubert D, Jacobsen SE. PMID: 21052090; PMCID: PMC2999860.
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    148. Epigenetic reprogramming in plant and animal development. Science. 2010 Oct 29; 330(6004):622-7. Feng S, Jacobsen SE, Reik W. PMID: 21030646; PMCID: PMC2989926.
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    149. The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana. PLoS Genet. 2010 Oct 28; 6(10):e1001182. Henderson IR, Deleris A, Wong W, Zhong X, Chin HG, Horwitz GA, Kelly KA, Pradhan S, Jacobsen SE. PMID: 21060858; PMCID: PMC2965745.
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    150. Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases. Nature. 2010 Aug 19; 466(7309):987-91. Jacob Y, Stroud H, Leblanc C, Feng S, Zhuo L, Caro E, Hassel C, Gutierrez C, Michaels SD, Jacobsen SE. PMID: 20631708; PMCID: PMC2964344.
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    151. Relationship between nucleosome positioning and DNA methylation. Nature. 2010 Jul 15; 466(7304):388-92. Chodavarapu RK, Feng S, Bernatavichute YV, Chen PY, Stroud H, Yu Y, Hetzel JA, Kuo F, Kim J, Cokus SJ, Casero D, Bernal M, Huijser P, Clark AT, Krämer U, Merchant SS, Zhang X, Jacobsen SE, Pellegrini M. PMID: 20512117; PMCID: PMC2964354.
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    152. A protein complex required for polymerase V transcripts and RNA- directed DNA methylation in Arabidopsis. Curr Biol. 2010 May 25; 20(10):951-6. Law JA, Ausin I, Johnson LM, Vashisht AA, Zhu JK, Wohlschlegel JA, Jacobsen SE. PMID: 20409711; PMCID: PMC2972704.
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    153. Conservation and divergence of methylation patterning in plants and animals. Proc Natl Acad Sci U S A. 2010 May 11; 107(19):8689-94. Feng S, Cokus SJ, Zhang X, Chen PY, Bostick M, Goll MG, Hetzel J, Jain J, Strauss SH, Halpern ME, Ukomadu C, Sadler KC, Pradhan S, Pellegrini M, Jacobsen SE. PMID: 20395551; PMCID: PMC2889301.
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    154. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet. 2010 Mar; 11(3):204-20. Law JA, Jacobsen SE. PMID: 20142834; PMCID: PMC3034103.
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    155. Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency. Nature. 2010 Feb 25; 463(7284):1101-5. Popp C, Dean W, Feng S, Cokus SJ, Andrews S, Pellegrini M, Jacobsen SE, Reik W. PMID: 20098412; PMCID: PMC2965733.
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    156. Accurate sodium bisulfite sequencing in plants. Epigenetics. 2010 Jan 01; 5(1):47-9. Henderson IR, Chan SR, Cao X, Johnson L, Jacobsen SE. PMID: 20081358; PMCID: PMC2829377.
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    157. IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana. Nat Struct Mol Biol. 2009 Dec; 16(12):1325-7. Ausin I, Mockler TC, Chory J, Jacobsen SE. PMID: 19915591; PMCID: PMC2842998.
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    158. SET7/9 mediated methylation of non-histone proteins in mammalian cells. Epigenetics. 2009 Aug 16; 4(6):383-7. Pradhan S, Chin HG, Estève PO, Jacobsen SE. PMID: 19684477; PMCID: PMC2974562.
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    159. A metastable DWARF1 epigenetic mutant affecting plant stature in rice. Proc Natl Acad Sci U S A. 2009 Jul 07; 106(27):11218-23. Miura K, Agetsuma M, Kitano H, Yoshimura A, Matsuoka M, Jacobsen SE, Ashikari M. PMID: 19541604; PMCID: PMC2708680.
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    160. Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana. Genome Biol. 2009; 10(6):R62. Zhang X, Bernatavichute YV, Cokus S, Pellegrini M, Jacobsen SE. PMID: 19508735; PMCID: PMC2718496.
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    161. ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing. Nat Struct Mol Biol. 2009 Jul; 16(7):763-8. Jacob Y, Feng S, LeBlanc CA, Bernatavichute YV, Stroud H, Cokus S, Johnson LM, Pellegrini M, Jacobsen SE, Michaels SD. PMID: 19503079; PMCID: PMC2754316.
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    162. Molecular biology. Dynamic DNA methylation. Science. 2009 Mar 20; 323(5921):1568-9. Law JA, Jacobsen SE. PMID: 19299607.
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    163. Regulation of DNMT1 stability through SET7-mediated lysine methylation in mammalian cells. Proc Natl Acad Sci U S A. 2009 Mar 31; 106(13):5076-81. Estève PO, Chin HG, Benner J, Feehery GR, Samaranayake M, Horwitz GA, Jacobsen SE, Pradhan S. PMID: 19282482; PMCID: PMC2654809.
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    164. Determining the conservation of DNA methylation in Arabidopsis. Epigenetics. 2009 Feb 16; 4(2):119-24. Widman N, Jacobsen SE, Pellegrini M. PMID: 19384058.
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    165. Criteria for annotation of plant MicroRNAs. Plant Cell. 2008 Dec; 20(12):3186-90. Meyers BC, Axtell MJ, Bartel B, Bartel DP, Baulcombe D, Bowman JL, Cao X, Carrington JC, Chen X, Green PJ, Griffiths-Jones S, Jacobsen SE, Mallory AC, Martienssen RA, Poethig RS, Qi Y, Vaucheret H, Voinnet O, Watanabe Y, Weigel D, Zhu JK. PMID: 19074682; PMCID: PMC2630443.
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    166. UHRF1 binds G9a and participates in p21 transcriptional regulation in mammalian cells. Nucleic Acids Res. 2009 Feb; 37(2):493-505. Kim JK, Estève PO, Jacobsen SE, Pradhan S. PMID: 19056828; PMCID: PMC2632929.
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    167. SRA-domain proteins required for DRM2-mediated de novo DNA methylation. PLoS Genet. 2008 Nov; 4(11):e1000280. Johnson LM, Law JA, Khattar A, Henderson IR, Jacobsen SE. PMID: 19043555; PMCID: PMC2582956.
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    168. ORTH/VIM proteins that regulate DNA methylation are functional ubiquitin E3 ligases. Plant J. 2008 Dec; 56(5):704-15. Kraft E, Bostick M, Jacobsen SE, Callis J. PMID: 18643997; PMCID: PMC2973330.
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    169. Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana. PLoS One. 2008 Sep 08; 3(9):e3156. Bernatavichute YV, Zhang X, Cokus S, Pellegrini M, Jacobsen SE. PMID: 18776934; PMCID: PMC2522283.
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    170. The SRA domain of UHRF1 flips 5-methylcytosine out of the DNA helix. Nature. 2008 Oct 09; 455(7214):826-9. Hashimoto H, Horton JR, Zhang X, Bostick M, Jacobsen SE, Cheng X. PMID: 18772888; PMCID: PMC2602803.
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    171. Sequencing sliced ends reveals microRNA targets. Nat Biotechnol. 2008 Aug; 26(8):881-2. Henderson IR, Jacobsen SE. PMID: 18688239; PMCID: PMC2989925.
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    172. Tandem repeats upstream of the Arabidopsis endogene SDC recruit non-CG DNA methylation and initiate siRNA spreading. Genes Dev. 2008 Jun 15; 22(12):1597-606. Henderson IR, Jacobsen SE. PMID: 18559476; PMCID: PMC2428058.
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    173. The impact of Arabidopsis on human health: diversifying our portfolio. Cell. 2008 Jun 13; 133(6):939-43. Jones AM, Chory J, Dangl JL, Estelle M, Jacobsen SE, Meyerowitz EM, Nordborg M, Weigel D. PMID: 18555767; PMCID: PMC3124625.
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    174. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature. 2008 Mar 13; 452(7184):215-9. Cokus SJ, Feng S, Zhang X, Chen Z, Merriman B, Haudenschild CD, Pradhan S, Nelson SF, Pellegrini M, Jacobsen SE. PMID: 18278030; PMCID: PMC2377394.
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    175. Dynamic regulation of ARGONAUTE4 within multiple nuclear bodies in Arabidopsis thaliana. PLoS Genet. 2008 Feb; 4(2):e27. Li CF, Henderson IR, Song L, Fedoroff N, Lagrange T, Jacobsen SE. PMID: 18266474; PMCID: PMC2233678.
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    176. Promoter methylation study of the H37/RBM5 tumor suppressor gene from the 3p21.3 human lung cancer tumor suppressor locus. Hum Genet. 2008 Feb; 123(1):55-64. Oh JJ, Boctor BN, Jimenez CA, Lopez R, Koegel AK, Taschereau EO, Phan DT, Jacobsen SE, Slamon DJ. PMID: 18038152.
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    177. Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components. Genes Dev. 2007 Oct 15; 21(20):2539-44. El-Shami M, Pontier D, Lahmy S, Braun L, Picart C, Vega D, Hakimi MA, Jacobsen SE, Cooke R, Lagrange T. PMID: 17938239; PMCID: PMC2000319.
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    178. The Arabidopsis LHP1 protein colocalizes with histone H3 Lys27 trimethylation. Nat Struct Mol Biol. 2007 Sep; 14(9):869-71. Zhang X, Germann S, Blus BJ, Khorasanizadeh S, Gaudin V, Jacobsen SE. PMID: 17676062.
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    179. UHRF1 plays a role in maintaining DNA methylation in mammalian cells. Science. 2007 Sep 21; 317(5845):1760-4. Bostick M, Kim JK, Estève PO, Clark A, Pradhan S, Jacobsen SE. PMID: 17673620.
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    180. Epigenetic inheritance in plants. Nature. 2007 May 24; 447(7143):418-24. Henderson IR, Jacobsen SE. PMID: 17522675.
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    181. Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis. PLoS Biol. 2007 May; 5(5):e129. Zhang X, Clarenz O, Cokus S, Bernatavichute YV, Pellegrini M, Goodrich J, Jacobsen SE. PMID: 17439305; PMCID: PMC1852588.
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    182. Role of RNA polymerase IV in plant small RNA metabolism. Proc Natl Acad Sci U S A. 2007 Mar 13; 104(11):4536-41. Zhang X, Henderson IR, Lu C, Green PJ, Jacobsen SE. PMID: 17360559; PMCID: PMC1810338.
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    183. The SRA methyl-cytosine-binding domain links DNA and histone methylation. Curr Biol. 2007 Feb 20; 17(4):379-84. Johnson LM, Bostick M, Zhang X, Kraft E, Henderson I, Callis J, Jacobsen SE. PMID: 17239600; PMCID: PMC1850948.
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    184. Two-step recruitment of RNA-directed DNA methylation to tandem repeats. PLoS Biol. 2006 Nov; 4(11):e363. Chan SW, Zhang X, Bernatavichute YV, Jacobsen SE. PMID: 17105345; PMCID: PMC1618421.
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    185. Acylguanidines as small-molecule beta-secretase inhibitors. J Med Chem. 2006 Oct 19; 49(21):6158-61. Cole DC, Manas ES, Stock JR, Condon JS, Jennings LD, Aulabaugh A, Chopra R, Cowling R, Ellingboe JW, Fan KY, Harrison BL, Hu Y, Jacobsen S, Jin G, Lin L, Lovering FE, Malamas MS, Stahl ML, Strand J, Sukhdeo MN, Svenson K, Turner MJ, Wagner E, Wu J, Zhou P, Bard J. PMID: 17034121.
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    186. Plant genetics: increased outcrossing in hothead mutants. Nature. 2006 Sep 28; 443(7110):E8; discussion E8-9. Peng P, Chan SW, Shah GA, Jacobsen SE. PMID: 17006468.
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    187. MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant. Genome Res. 2006 Oct; 16(10):1276-88. Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC. PMID: 16954541; PMCID: PMC1581437.
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    188. Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell. 2006 Sep 22; 126(6):1189-201. Zhang X, Yazaki J, Sundaresan A, Cokus S, Chan SW, Chen H, Henderson IR, Shinn P, Pellegrini M, Jacobsen SE, Ecker JR. PMID: 16949657.
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    189. The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center. Cell. 2006 Jul 14; 126(1):79-92. Pontes O, Li CF, Costa Nunes P, Haag J, Ream T, Vitins A, Jacobsen SE, Pikaard CS. PMID: 16839878.
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    190. An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana. Cell. 2006 Jul 14; 126(1):93-106. Li CF, Pontes O, El-Shami M, Henderson IR, Bernatavichute YV, Chan SW, Lagrange T, Pikaard CS, Jacobsen SE. PMID: 16839879.
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    191. RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in arabidopsis. PLoS Genet. 2006 Jun 02; 2(6):e83. Chan SW, Henderson IR, Zhang X, Shah G, Chien JS, Jacobsen SE. PMID: 16741558; PMCID: PMC1472700.
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    192. Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nat Genet. 2006 Jun; 38(6):721-5. Henderson IR, Zhang X, Lu C, Johnson L, Meyers BC, Green PJ, Jacobsen SE. PMID: 16699516.
      View in: PubMed   Mentions: 307     Fields:    Translation:Cells
    193. Epigenetic maintenance of the vernalized state in Arabidopsis thaliana requires LIKE HETEROCHROMATIN PROTEIN 1. Nat Genet. 2006 Jun; 38(6):706-10. Sung S, He Y, Eshoo TW, Tamada Y, Johnson L, Nakahigashi K, Goto K, Jacobsen SE, Amasino RM. PMID: 16682972.
      View in: PubMed   Mentions: 111     Fields:    Translation:Animals
    194. LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC. Proc Natl Acad Sci U S A. 2006 Mar 28; 103(13):5012-7. Mylne JS, Barrett L, Tessadori F, Mesnage S, Johnson L, Bernatavichute YV, Jacobsen SE, Fransz P, Dean C. PMID: 16549797; PMCID: PMC1458786.
      View in: PubMed   Mentions: 95     Fields:    Translation:AnimalsCells
    195. Catalytic properties and kinetic mechanism of human recombinant Lys-9 histone H3 methyltransferase SUV39H1: participation of the chromodomain in enzymatic catalysis. Biochemistry. 2006 Mar 14; 45(10):3272-84. Chin HG, Patnaik D, Estève PO, Jacobsen SE, Pradhan S. PMID: 16519522.
      View in: PubMed   Mentions: 39     Fields:    Translation:HumansAnimalsCells
    196. Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2. Science. 2006 Jan 20; 311(5759):395-8. Goll MG, Kirpekar F, Maggert KA, Yoder JA, Hsieh CL, Zhang X, Golic KG, Jacobsen SE, Bestor TH. PMID: 16424344.
      View in: PubMed   Mentions: 461     Fields:    Translation:HumansAnimalsCells
    197. Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis. Genome Biol. 2005; 6(11):R90. Tran RK, Zilberman D, de Bustos C, Ditt RF, Henikoff JG, Lindroth AM, Delrow J, Boyle T, Kwong S, Bryson TD, Jacobsen SE, Henikoff S. PMID: 16277745; PMCID: PMC1297646.
      View in: PubMed   Mentions: 48     Fields:    Translation:AnimalsCells
    198. Gardening the genome: DNA methylation in Arabidopsis thaliana. Nat Rev Genet. 2005 May; 6(5):351-60. Chan SW, Henderson IR, Jacobsen SE. PMID: 15861207.
      View in: PubMed   Mentions: 366     Fields:    Translation:AnimalsCells
    199. DDM1 binds Arabidopsis methyl-CpG binding domain proteins and affects their subnuclear localization. Plant Cell. 2005 May; 17(5):1549-58. Zemach A, Li Y, Wayburn B, Ben-Meir H, Kiss V, Avivi Y, Kalchenko V, Jacobsen SE, Grafi G. PMID: 15805479; PMCID: PMC1091773.
      View in: PubMed   Mentions: 39     Fields:    Translation:AnimalsCells
    200. DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes. Curr Biol. 2005 Jan 26; 15(2):154-9. Tran RK, Henikoff JG, Zilberman D, Ditt RF, Jacobsen SE, Henikoff S. PMID: 15668172.
      View in: PubMed   Mentions: 102     Fields:    Translation:AnimalsCells
    201. Applications of DNA tiling arrays for whole-genome analysis. Genomics. 2005 Jan; 85(1):1-15. Mockler TC, Chan S, Sundaresan A, Chen H, Jacobsen SE, Ecker JR. PMID: 15607417.
      View in: PubMed   Mentions: 107     Fields:    Translation:HumansAnimalsCells
    202. Mass spectrometry analysis of Arabidopsis histone H3 reveals distinct combinations of post-translational modifications. Nucleic Acids Res. 2004; 32(22):6511-8. Johnson L, Mollah S, Garcia BA, Muratore TL, Shabanowitz J, Hunt DF, Jacobsen SE. PMID: 15598823; PMCID: PMC545460.
      View in: PubMed   Mentions: 91     Fields:    Translation:Cells
    203. Substrate specificity and kinetic mechanism of mammalian G9a histone H3 methyltransferase. J Biol Chem. 2004 Dec 17; 279(51):53248-58. Patnaik D, Chin HG, Estève PO, Benner J, Jacobsen SE, Pradhan S. PMID: 15485804.
      View in: PubMed   Mentions: 74     Fields:    Translation:AnimalsCells
    204. Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3. EMBO J. 2004 Oct 27; 23(21):4286-96. Lindroth AM, Shultis D, Jasencakova Z, Fuchs J, Johnson L, Schubert D, Patnaik D, Pradhan S, Goodrich J, Schubert I, Jenuwein T, Khorasanizadeh S, Jacobsen SE. PMID: 15457214; PMCID: PMC524394.
      View in: PubMed   Mentions: 152     Fields:    Translation:HumansAnimalsCells
    205. Small interfering RNA-induced transcriptional gene silencing in human cells. Science. 2004 Aug 27; 305(5688):1289-92. Morris KV, Chan SW, Jacobsen SE, Looney DJ. PMID: 15297624.
      View in: PubMed   Mentions: 353     Fields:    Translation:HumansCells
    206. Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats. Curr Biol. 2004 Jul 13; 14(13):1214-20. Zilberman D, Cao X, Johansen LK, Xie Z, Carrington JC, Jacobsen SE. PMID: 15242620.
      View in: PubMed   Mentions: 114     Fields:    Translation:AnimalsCells
    207. Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana. Chromosoma. 2004 Mar; 112(6):308-15. Jackson JP, Johnson L, Jasencakova Z, Zhang X, PerezBurgos L, Singh PB, Cheng X, Schubert I, Jenuwein T, Jacobsen SE. PMID: 15014946.
      View in: PubMed   Mentions: 135     Fields:    Translation:AnimalsCells
    208. RNA silencing genes control de novo DNA methylation. Science. 2004 Feb 27; 303(5662):1336. Chan SW, Zilberman D, Xie Z, Johansen LK, Carrington JC, Jacobsen SE. PMID: 14988555.
      View in: PubMed   Mentions: 226     Fields:    Translation:AnimalsCells
    209. Genetic and functional diversification of small RNA pathways in plants. PLoS Biol. 2004 May; 2(5):E104. Xie Z, Johansen LK, Gustafson AM, Kasschau KD, Lellis AD, Zilberman D, Jacobsen SE, Carrington JC. PMID: 15024409; PMCID: PMC350667.
      View in: PubMed   Mentions: 682     Fields:    Translation:AnimalsCells
    210. Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation. Curr Biol. 2003 Dec 16; 13(24):2212-7. Cao X, Aufsatz W, Zilberman D, Mette MF, Huang MS, Matzke M, Jacobsen SE. PMID: 14680640.
      View in: PubMed   Mentions: 213     Fields:    Translation:AnimalsCells
    211. One-way control of FWA imprinting in Arabidopsis endosperm by DNA methylation. Science. 2004 Jan 23; 303(5657):521-3. Kinoshita T, Miura A, Choi Y, Kinoshita Y, Cao X, Jacobsen SE, Fischer RL, Kakutani T. PMID: 14631047.
      View in: PubMed   Mentions: 222     Fields:    Translation:AnimalsCells
    212. Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis. Curr Biol. 2003 Mar 04; 13(5):421-6. Kato M, Miura A, Bender J, Jacobsen SE, Kakutani T. PMID: 12620192.
      View in: PubMed   Mentions: 134     Fields:    Translation:AnimalsCells
    213. ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science. 2003 Jan 31; 299(5607):716-9. Zilberman D, Cao X, Jacobsen SE. PMID: 12522258.
      View in: PubMed   Mentions: 437     Fields:    Translation:AnimalsCells
    214. DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis. EMBO J. 2002 Dec 02; 21(23):6549-59. Soppe WJ, Jasencakova Z, Houben A, Kakutani T, Meister A, Huang MS, Jacobsen SE, Schubert I, Fransz PF. PMID: 12456661; PMCID: PMC136960.
      View in: PubMed   Mentions: 191     Fields:    Translation:AnimalsCells
    215. DICER-LIKE1: blind men and elephants in Arabidopsis development. Trends Plant Sci. 2002 Nov; 7(11):487-91. Schauer SE, Jacobsen SE, Meinke DW, Ray A. PMID: 12417148.
      View in: PubMed   Mentions: 187     Fields:    Translation:Animals
    216. Interplay between two epigenetic marks. DNA methylation and histone H3 lysine 9 methylation. Curr Biol. 2002 Aug 20; 12(16):1360-7. Johnson L, Cao X, Jacobsen S. PMID: 12194816.
      View in: PubMed   Mentions: 209     Fields:    Translation:AnimalsCells
    217. Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes. Proc Natl Acad Sci U S A. 2002 Dec 10; 99 Suppl 4:16491-8. Cao X, Jacobsen SE. PMID: 12151602; PMCID: PMC139913.
      View in: PubMed   Mentions: 251     Fields:    Translation:HumansAnimalsCells
    218. DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in arabidopsis. Cell. 2002 Jul 12; 110(1):33-42. Choi Y, Gehring M, Johnson L, Hannon M, Harada JJ, Goldberg RB, Jacobsen SE, Fischer RL. PMID: 12150995.
      View in: PubMed   Mentions: 306     Fields:    Translation:HumansAnimalsCells
    219. Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing. Curr Biol. 2002 Jul 09; 12(13):1138-44. Cao X, Jacobsen SE. PMID: 12121623.
      View in: PubMed   Mentions: 353     Fields:    Translation:AnimalsCells
    220. Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase. Nature. 2002 Apr 04; 416(6880):556-60. Jackson JP, Lindroth AM, Cao X, Jacobsen SE. PMID: 11898023.
      View in: PubMed   Mentions: 468     Fields:    Translation:HumansAnimalsCells
    221. Ectopic hypermethylation of flower-specific genes in Arabidopsis. Curr Biol. 2000 Feb 24; 10(4):179-86. Jacobsen SE, Sakai H, Finnegan EJ, Cao X, Meyerowitz EM. PMID: 10704409.
      View in: PubMed   Mentions: 87     Fields:    Translation:AnimalsCells
    222. Disruption of an RNA helicase/RNAse III gene in Arabidopsis causes unregulated cell division in floral meristems. Development. 1999 Dec; 126(23):5231-43. Jacobsen SE, Running MP, Meyerowitz EM. PMID: 10556049.
      View in: PubMed   Mentions: 144     Fields:    Translation:AnimalsCells
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