Steven Erik Jacobsen

Title(s)Professor, Molecular, Cell and Developmental Biology
SchoolCollege of Letters and Science
vCardDownload vCard
    Other Positions
    Title(s)Professor, Biological Chemistry


    Collapse Research 
    Collapse Research Activities and Funding
    Epigenetic gene regulation in Arabidopsis
    NIH R35GM130272Feb 1, 2019 - Jan 31, 2024
    Role: Principal Investigator
    2007 Epigenetics Gordon Research Conference
    NIH R13HD056518Jul 20, 2007 - Jun 30, 2008
    Role: Principal Investigator
    Genetics of DNA methylation patterning of arabidopsis.
    NIH R37GM060398Jan 1, 2000 - Dec 31, 2018
    Role: Principal Investigator
    Genetics of DNA Methylation Patterning of Arabidopsis
    NIH R01GM060398Jan 1, 2000 - Dec 31, 2008
    Role: Principal Investigator
    SPATIAL REGULATION OF A THALIANA FLORAL HOMEOTIC GENES
    NIH F32GM015964Sep 30, 1993
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. MBD2 couples DNA methylation to transposable element silencing during male gametogenesis. Nat Plants. 2024 Jan 15. Wang S, Wang M, Ichino L, Boone BA, Zhong Z, Papareddy RK, Lin EK, Yun J, Feng S, Jacobsen SE. PMID: 38225352.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    2. Eukaryotic RNA-guided endonucleases evolved from a unique clade of bacterial enzymes. Nucleic Acids Res. 2023 Dec 11; 51(22):12414-12427. Yoon PH, Skopintsev P, Shi H, Chen L, Adler BA, Al-Shimary M, Craig RJ, Loi KJ, DeTurk EC, Li Z, Amerasekera J, Trinidad M, Nisonoff H, Chen K, Lahiri A, Boger R, Jacobsen S, Banfield JF, Doudna JA. PMID: 37971304; PMCID: PMC10711439.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    3. H3.1K27me1 loss confers Arabidopsis resistance to Geminivirus by sequestering DNA repair proteins onto host genome. Nat Commun. 2023 11 18; 14(1):7484. Wang Z, Castillo-González CM, Zhao C, Tong CY, Li C, Zhong S, Liu Z, Xie K, Zhu J, Wu Z, Peng X, Jacob Y, Michaels SD, Jacobsen SE, Zhang X. PMID: 37980416; PMCID: PMC10657422.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    4. ACD15, ACD21, and SLN regulate the accumulation and mobility of MBD6 to silence genes and transposable elements. Sci Adv. 2023 11 17; 9(46):eadi9036. Boone BA, Ichino L, Wang S, Gardiner J, Yun J, Jami-Alahmadi Y, Sha J, Mendoza CP, Steelman BJ, van Aardenne A, Kira-Lucas S, Trentchev I, Wohlschlegel JA, Jacobsen SE. PMID: 37967186; PMCID: PMC10651127.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    5. Genome Mining from Agriculturally Relevant Fungi Led to a d-Glucose Esterified Polyketide with a Terpene-like Core Structure. J Am Chem Soc. 2023 Nov 22; 145(46):25080-25085. Yan C, Han W, Zhou Q, Niwa K, Tang MJ, Burch JE, Zhang Y, Delgadillo DA, Sun Z, Wu Z, Jacobsen SE, Nelson H, Houk KN, Tang Y. PMID: 37948671; PMCID: PMC10682982.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    6. ACD15, ACD21 and SLN regulate accumulation and mobility of MBD6 to silence genes and transposable elements. bioRxiv. 2023 Oct 06. Boone BA, Ichino L, Wang S, Gardiner J, Yun J, Jami-Alahmadi Y, Sha J, Mendoza CP, Steelman BJ, van Aardenne A, Kira-Lucas S, Trentchev I, Wohlschlegel JA, Jacobsen SE. PMID: 37662299; PMCID: PMC10473691.
      View in: PubMed   Mentions:
    7. Enhancers associated with unstable RNAs are rare in plants. bioRxiv. 2023 Sep 25. Mcdonald BR, Picard C, Brabb IM, Savenkova MI, Schmitz RJ, Jacobsen SE, Duttke SH. PMID: 37808859; PMCID: PMC10557634.
      View in: PubMed   Mentions:
    8. A maternally programmed intergenerational mechanism enables male offspring to make piRNAs from Y-linked precursor RNAs in Drosophila. Nat Cell Biol. 2023 Oct; 25(10):1495-1505. Venkei ZG, Gainetdinov I, Bagci A, Starostik MR, Choi CP, Fingerhut JM, Chen P, Balsara C, Whitfield TW, Bell GW, Feng S, Jacobsen SE, Aravin AA, Kim JK, Zamore PD, Yamashita YM. PMID: 37723298; PMCID: PMC10567549.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    9. Eukaryotic RNA-guided endonucleases evolved from a unique clade of bacterial enzymes. bioRxiv. 2023 Aug 10. Yoon PH, Skopintsev P, Shi H, Chen LX, Adler BA, Al-Shimary M, Craig RJ, Li Z, Amerasekera J, Trinidad M, Nisonoff H, Chen K, Lahiri A, Boger R, Jacobsen S, Banfield JF, Doudna JA. PMID: 37609353; PMCID: PMC10441404.
      View in: PubMed   Mentions:
    10. Assessing the Biosynthetic Inventory of the Biocontrol Fungus Trichoderma afroharzianum T22. J Agric Food Chem. 2023 Aug 02; 71(30):11502-11519. Han W, Wu Z, Zhong Z, Williams J, Jacobsen SE, Sun Z, Tang Y. PMID: 37471583.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    11. The MOM1 complex recruits the RdDM machinery via MORC6 to establish de novo DNA methylation. Nat Commun. 2023 07 12; 14(1):4135. Li Z, Wang M, Zhong Z, Gallego-Bartolomé J, Feng S, Jami-Alahmadi Y, Wang X, Wohlschlegel J, Bischof S, Long JA, Jacobsen SE. PMID: 37438334; PMCID: PMC10338684.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    12. Structural Analysis of Non-native Peptide-Based Catalysts Using 2D NMR-Guided MD Simulations. J Phys Chem A. 2023 Jul 06; 127(26):5602-5608. Parkman JA, Barlow CD, Sheppert AP, Jacobsen S, Barksdale CA, Wayment AX, Newton MP, Burt SR, Michaelis DJ. PMID: 37347770; PMCID: PMC10722561.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    13. H1 restricts euchromatin-associated methylation pathways from heterochromatic encroachment. bioRxiv. 2023 May 11. Harris CJ, Zhong Z, Ichino L, Feng S, Jacobsen SE. PMID: 37214879; PMCID: PMC10197610.
      View in: PubMed   Mentions:
    14. MORC proteins regulate transcription factor binding by mediating chromatin compaction in active chromatin regions. Genome Biol. 2023 04 26; 24(1):96. Zhong Z, Xue Y, Harris CJ, Wang M, Li Z, Ke Y, Liu M, Zhou J, Jami-Alahmadi Y, Feng S, Wohlschlegel JA, Jacobsen SE. PMID: 37101218; PMCID: PMC10131428.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    15. Arabidopsis TRB proteins function in H3K4me3 demethylation by recruiting JMJ14. Nat Commun. 2023 03 28; 14(1):1736. Wang M, Zhong Z, Gallego-Bartolomé J, Feng S, Shih YH, Liu M, Zhou J, Richey JC, Ng C, Jami-Alahmadi Y, Wohlschlegel J, Wu K, Jacobsen SE. PMID: 36977663; PMCID: PMC10049986.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    16. Structure and mechanism of the plant RNA polymerase V. Science. 2023 03 24; 379(6638):1209-1213. Xie G, Du X, Hu H, Li S, Cao X, Jacobsen SE, Du J. PMID: 36893216; PMCID: PMC10041816.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    17. A gene silencing screen uncovers diverse tools for targeted gene repression in Arabidopsis. Nat Plants. 2023 03; 9(3):460-472. Wang M, Zhong Z, Gallego-Bartolomé J, Li Z, Feng S, Kuo HY, Kan RL, Lam H, Richey JC, Tang L, Zhou J, Liu M, Jami-Alahmadi Y, Wohlschlegel J, Jacobsen SE. PMID: 36879017; PMCID: PMC10027610.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    18. Genome editing in plants using the compact editor CasΦ. Proc Natl Acad Sci U S A. 2023 01 24; 120(4):e2216822120. Li Z, Zhong Z, Wu Z, Pausch P, Al-Shayeb B, Amerasekera J, Doudna JA, Jacobsen SE. PMID: 36652483; PMCID: PMC9942878.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    19. The MOM1 complex recruits the RdDM machinery via MORC6 to establish de novo DNA methylation. bioRxiv. 2023 Jan 10. Li Z, Wang M, Zhong Z, Gallego-Bartolomé J, Feng S, Jami-Alahmadi Y, Wang X, Wohlschlegel J, Bischof S, Long JA, Jacobsen SE. PMID: 36711532; PMCID: PMC9882083.
      View in: PubMed   Mentions:
    20. Improving cassava bacterial blight resistance by editing the epigenome. Nat Commun. 2023 01 05; 14(1):85. Veley KM, Elliott K, Jensen G, Zhong Z, Feng S, Yoder M, Gilbert KB, Berry JC, Lin ZD, Ghoshal B, Gallego-Bartolomé J, Norton J, Motomura-Wages S, Carrington JC, Jacobsen SE, Bart RS. PMID: 36604425; PMCID: PMC9816117.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    21. Haplotype-resolved DNA methylome of African cassava genome. Plant Biotechnol J. 2023 02; 21(2):247-249. Zhong Z, Feng S, Mansfeld BN, Ke Y, Qi W, Lim YW, Gruissem W, Bart RS, Jacobsen SE. PMID: 36318278; PMCID: PMC9884013.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    22. Diverse virus-encoded CRISPR-Cas systems include streamlined genome editors. Cell. 2022 11 23; 185(24):4574-4586.e16. Al-Shayeb B, Skopintsev P, Soczek KM, Stahl EC, Li Z, Groover E, Smock D, Eggers AR, Pausch P, Cress BF, Huang CJ, Staskawicz B, Savage DF, Jacobsen SE, Banfield JF, Doudna JA. PMID: 36423580.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansAnimalsCells
    23. Single-nucleus RNA-seq reveals that MBD5, MBD6, and SILENZIO maintain silencing in the vegetative cell of developing pollen. Cell Rep. 2022 Nov 22; 41(8):111699. Ichino L, Picard CL, Yun J, Chotai M, Wang S, Lin EK, Papareddy RK, Xue Y, Jacobsen SE. PMID: 36417865.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    24. Histone chaperone ASF1 mediates H3.3-H4 deposition in Arabidopsis. Nat Commun. 2022 Nov 15; 13(1):6970. Zhong Z, Wang Y, Wang M, Yang F, Thomas QA, Xue Y, Zhang Y, Liu W, Jami-Alahmadi Y, Xu L, Feng S, Marquardt S, Wohlschlegel JA, Ausin I, Jacobsen SE. PMID: 36379930; PMCID: PMC9666630.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    25. Mutations in DNA polymerase δ subunit 1 co-segregate with CMD2-type resistance to Cassava Mosaic Geminiviruses. Nat Commun. 2022 07 07; 13(1):3933. Lim YW, Mansfeld BN, Schläpfer P, Gilbert KB, Narayanan NN, Qi W, Wang Q, Zhong Z, Boyher A, Gehan J, Beyene G, Lin ZD, Esuma W, Feng S, Chanez C, Eggenberger N, Adiga G, Alicai T, Jacobsen SE, Taylor NJ, Gruissem W, Bart RS. PMID: 35798722; PMCID: PMC9262879.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    26. Comprehensive identification of SWI/SNF complex subunits underpins deep eukaryotic ancestry and reveals new plant components. Commun Biol. 2022 06 06; 5(1):549. Hernández-García J, Diego-Martin B, Kuo PH, Jami-Alahmadi Y, Vashisht AA, Wohlschlegel J, Jacobsen SE, Blázquez MA, Gallego-Bartolomé J. PMID: 35668117; PMCID: PMC9170682.
      View in: PubMed   Mentions: 10  Translation:AnimalsCells
    27. A SYBR Gold-based Label-free in vitro Dicing Assay. Bio Protoc. 2022 Apr 05; 12(7):e4382. Wang Q, Xue Y, Zhang L, Zhong Z, Feng S, Wang C, Xiao L, Yang Z, Harris JC, Wu Z, Zhai J, Yang M, Li S, Jacobsen SE, Du J. PMID: 35530519; PMCID: PMC9018436.
      View in: PubMed   Mentions: 1  
    28. CRISPR-Cas-mediated transcriptional control and epi-mutagenesis. Plant Physiol. 2022 03 28; 188(4):1811-1824. Gardiner J, Ghoshal B, Wang M, Jacobsen SE. PMID: 35134247; PMCID: PMC8968285.
      View in: PubMed   Mentions: 9     Fields:    
    29. The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis. Proc Natl Acad Sci U S A. 2022 01 18; 119(3). Potok ME, Zhong Z, Picard CL, Liu Q, Do T, Jacobsen CE, Sakr O, Naranbaatar B, Thilakaratne R, Khnkoyan Z, Purl M, Cheng H, Vervaet H, Feng S, Rayatpisheh S, Wohlschlegel JA, O'Malley RC, Ecker JR, Jacobsen SE. PMID: 35027454; PMCID: PMC8784105.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    30. The role of MORC3 in silencing transposable elements in mouse embryonic stem cells. Epigenetics Chromatin. 2021 10 27; 14(1):49. Desai VP, Chouaref J, Wu H, Pastor WA, Kan RL, Oey HM, Li Z, Ho J, Vonk KKD, San Leon Granado D, Christopher MA, Clark AT, Jacobsen SE, Daxinger L. PMID: 34706774; PMCID: PMC8555065.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    31. Mechanism of siRNA production by a plant Dicer-RNA complex in dicing-competent conformation. Science. 2021 Nov 26; 374(6571):1152-1157. Wang Q, Xue Y, Zhang L, Zhong Z, Feng S, Wang C, Xiao L, Yang Z, Harris CJ, Wu Z, Zhai J, Yang M, Li S, Jacobsen SE, Du J. PMID: 34648373; PMCID: PMC8682726.
      View in: PubMed   Mentions: 30     Fields:    Translation:AnimalsCells
    32. MORC3, a novel MIWI2 association partner, as an epigenetic regulator of piRNA dependent transposon silencing in male germ cells. Sci Rep. 2021 10 14; 11(1):20472. Kojima-Kita K, Kuramochi-Miyagawa S, Nakayama M, Miyata H, Jacobsen SE, Ikawa M, Koseki H, Nakano T. PMID: 34650118; PMCID: PMC8516955.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    33. Plant genome engineering from lab to field-a Keystone Symposia report. Ann N Y Acad Sci. 2021 12; 1506(1):35-54. Cable J, Ronald PC, Voytas D, Zhang F, Levy AA, Takatsuka A, Arimura SI, Jacobsen SE, Toki S, Toda E, Gao C, Zhu JK, Boch J, Van Eck J, Mahfouz M, Andersson M, Fridman E, Weiss T, Wang K, Qi Y, Jores T, Adams T, Bagchi R. PMID: 34435370.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    34. Arabidopsis MORC proteins function in the efficient establishment of RNA directed DNA methylation. Nat Commun. 2021 07 13; 12(1):4292. Xue Y, Zhong Z, Harris CJ, Gallego-Bartolomé J, Wang M, Picard C, Cao X, Hua S, Kwok I, Feng S, Jami-Alahmadi Y, Sha J, Gardiner J, Wohlschlegel J, Jacobsen SE. PMID: 34257299; PMCID: PMC8277788.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    35. CRISPR-based targeting of DNA methylation in Arabidopsis thaliana by a bacterial CG-specific DNA methyltransferase. Proc Natl Acad Sci U S A. 2021 06 08; 118(23). Ghoshal B, Picard CL, Vong B, Feng S, Jacobsen SE. PMID: 34074795; PMCID: PMC8201958.
      View in: PubMed   Mentions: 23     Fields:    Translation:AnimalsCells
    36. MBD5 and MBD6 couple DNA methylation to gene silencing through the J-domain protein SILENZIO. Science. 2021 Jun 03. Ichino L, Boone BA, Strauskulage L, Harris CJ, Kaur G, Gladstone MA, Tan M, Feng S, Jami-Alahmadi Y, Duttke SH, Wohlschlegel JA, Cheng X, Redding S, Jacobsen SE. PMID: 34083448; PMCID: PMC8639832.
      View in: PubMed   Mentions: 15     Fields:    
    37. Ectopic targeting of CG DNA methylation in Arabidopsis with the bacterial SssI methyltransferase. Nat Commun. 2021 05 25; 12(1):3130. Liu W, Gallego-Bartolomé J, Zhou Y, Zhong Z, Wang M, Wongpalee SP, Gardiner J, Feng S, Kuo PH, Jacobsen SE. PMID: 34035251; PMCID: PMC8149686.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    38. The histone variant H2A.W and linker histone H1 co-regulate heterochromatin accessibility and DNA methylation. Nat Commun. 2021 05 11; 12(1):2683. Bourguet P, Picard CL, Yelagandula R, Pélissier T, Lorkovic ZJ, Feng S, Pouch-Pélissier MN, Schmücker A, Jacobsen SE, Berger F, Mathieu O. PMID: 33976212; PMCID: PMC8113232.
      View in: PubMed   Mentions: 28     Fields:    Translation:AnimalsCells
    39. Whole-genome characterization of chronological age-associated changes in methylome and circular RNAs in moso bamboo (Phyllostachys edulis) from vegetative to floral growth. Plant J. 2021 04; 106(2):435-453. Zhang Z, Wang H, Wang Y, Xi F, Wang H, Kohnen MV, Gao P, Wei W, Chen K, Liu X, Gao Y, Han X, Hu K, Zhang H, Zhu Q, Zheng Y, Liu B, Ahmad A, Hsu YH, Jacobsen SE, Gu L. PMID: 33506534.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    40. SNPC-1.3 is a sex-specific transcription factor that drives male piRNA expression in C. elegans. Elife. 2021 02 15; 10. Choi CP, Tay RJ, Starostik MR, Feng S, Moresco JJ, Montgomery BE, Xu E, Hammonds MA, Schatz MC, Montgomery TA, Yates JR, Jacobsen SE, Kim JK. PMID: 33587037; PMCID: PMC7884074.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    41. DNA methylation-linked chromatin accessibility affects genomic architecture in Arabidopsis. Proc Natl Acad Sci U S A. 2021 02 02; 118(5). Zhong Z, Feng S, Duttke SH, Potok ME, Zhang Y, Gallego-Bartolomé J, Liu W, Jacobsen SE. PMID: 33495321; PMCID: PMC7865151.
      View in: PubMed   Mentions: 35     Fields:    Translation:AnimalsCells
    42. A viral guide RNA delivery system for CRISPR-based transcriptional activation and heritable targeted DNA demethylation in Arabidopsis thaliana. PLoS Genet. 2020 Dec; 16(12):e1008983. Ghoshal B, Vong B, Picard CL, Feng S, Tam JM, Jacobsen SE. PMID: 33315895; PMCID: PMC7769603.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    43. DNA polymerase epsilon is required for heterochromatin maintenance in Arabidopsis. Genome Biol. 2020 11 25; 21(1):283. Bourguet P, López-González L, Gómez-Zambrano Á, Pélissier T, Hesketh A, Potok ME, Pouch-Pélissier MN, Perez M, Da Ines O, Latrasse D, White CI, Jacobsen SE, Benhamed M, Mathieu O. PMID: 33234150; PMCID: PMC7687843.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    44. Efficient and accurate determination of genome-wide DNA methylation patterns in Arabidopsis thaliana with enzymatic methyl sequencing. Epigenetics Chromatin. 2020 10 07; 13(1):42. Feng S, Zhong Z, Wang M, Jacobsen SE. PMID: 33028374; PMCID: PMC7542392.
      View in: PubMed   Mentions: 26     Fields:    Translation:AnimalsCells
    45. CRISPR-CasΦ from huge phages is a hypercompact genome editor. Science. 2020 07 17; 369(6501):333-337. Pausch P, Al-Shayeb B, Bisom-Rapp E, Tsuchida CA, Li Z, Cress BF, Knott GJ, Jacobsen SE, Banfield JF, Doudna JA. PMID: 32675376; PMCID: PMC8207990.
      View in: PubMed   Mentions: 177     Fields:    Translation:Cells
    46. Promoter and Terminator Optimization for DNA Methylation Targeting in Arabidopsis. Epigenomes. 2020 Jun 12; 4(2). Gardiner J, Zhao JM, Chaffin K, Jacobsen SE. PMID: 34968243; PMCID: PMC8594676.
      View in: PubMed   Mentions: 1  
    47. NAP1-RELATED PROTEIN1 and 2 negatively regulate H2A.Z abundance in chromatin in Arabidopsis. Nat Commun. 2020 06 08; 11(1):2887. Wang Y, Zhong Z, Zhang Y, Xu L, Feng S, Rayatpisheh S, Wohlschlegel JA, Wang Z, Jacobsen SE, Ausin I. PMID: 32513971; PMCID: PMC7280298.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    48. The characterization of Mediator 12 and 13 as conditional positive gene regulators in Arabidopsis. Nat Commun. 2020 06 03; 11(1):2798. Liu Q, Bischof S, Harris CJ, Zhong Z, Zhan L, Nguyen C, Rashoff A, Barshop WD, Sun F, Feng S, Potok M, Gallego-Bartolome J, Zhai J, Wohlschlegel JA, Carey MF, Long JA, Jacobsen SE. PMID: 32493925; PMCID: PMC7271234.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    49. The plant mobile domain proteins MAIN and MAIL1 interact with the phosphatase PP7L to regulate gene expression and silence transposable elements in Arabidopsis thaliana. PLoS Genet. 2020 04; 16(4):e1008324. Nicolau M, Picault N, Descombin J, Jami-Alahmadi Y, Feng S, Bucher E, Jacobsen SE, Deragon JM, Wohlschlegel J, Moissiard G. PMID: 32287271; PMCID: PMC7156037.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    50. A kinesin Klp10A mediates cell cycle-dependent shuttling of Piwi between nucleus and nuage. PLoS Genet. 2020 03; 16(3):e1008648. Venkei ZG, Choi CP, Feng S, Chen C, Jacobsen SE, Kim JK, Yamashita YM. PMID: 32168327; PMCID: PMC7094869.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    51. CryoEM structures of Arabidopsis DDR complexes involved in RNA-directed DNA methylation. Nat Commun. 2019 09 02; 10(1):3916. Wongpalee SP, Liu S, Gallego-Bartolomé J, Leitner A, Aebersold R, Liu W, Yen L, Nohales MA, Kuo PH, Vashisht AA, Wohlschlegel JA, Feng S, Kay SA, Zhou ZH, Jacobsen SE. PMID: 31477705; PMCID: PMC6718625.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    52. The Gene-Silencing Protein MORC-1 Topologically Entraps DNA and Forms Multimeric Assemblies to Cause DNA Compaction. Mol Cell. 2019 08 22; 75(4):700-710.e6. Kim H, Yen L, Wongpalee SP, Kirshner JA, Mehta N, Xue Y, Johnston JB, Burlingame AL, Kim JK, Loparo JJ, Jacobsen SE. PMID: 31442422; PMCID: PMC6814019.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    53. Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. Nat Commun. 2019 07 26; 10(1):3352. Potok ME, Wang Y, Xu L, Zhong Z, Liu W, Feng S, Naranbaatar B, Rayatpisheh S, Wang Z, Wohlschlegel JA, Ausin I, Jacobsen SE. PMID: 31350403; PMCID: PMC6659704.
      View in: PubMed   Mentions: 26     Fields:    Translation:AnimalsCells
    54. Multi-level Modulation of Light Signaling by GIGANTEA Regulates Both the Output and Pace of the Circadian Clock. Dev Cell. 2019 06 17; 49(6):840-851.e8. Nohales MA, Liu W, Duffy T, Nozue K, Sawa M, Pruneda-Paz JL, Maloof JN, Jacobsen SE, Kay SA. PMID: 31105011; PMCID: PMC6597437.
      View in: PubMed   Mentions: 26     Fields:    Translation:AnimalsCells
    55. Genome mining and biosynthesis of a polyketide from a biofertilizer fungus that can facilitate reductive iron assimilation in plant. Proc Natl Acad Sci U S A. 2019 03 19; 116(12):5499-5504. Chen M, Liu Q, Gao SS, Young AE, Jacobsen SE, Tang Y. PMID: 30842286; PMCID: PMC6431147.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    56. Site-specific manipulation of Arabidopsis loci using CRISPR-Cas9 SunTag systems. Nat Commun. 2019 02 13; 10(1):729. Papikian A, Liu W, Gallego-Bartolomé J, Jacobsen SE. PMID: 30760722; PMCID: PMC6374409.
      View in: PubMed   Mentions: 99     Fields:    Translation:AnimalsCells
    57. Co-targeting RNA Polymerases IV and V Promotes Efficient De Novo DNA Methylation in Arabidopsis. Cell. 2019 02 21; 176(5):1068-1082.e19. Gallego-Bartolomé J, Liu W, Kuo PH, Feng S, Ghoshal B, Gardiner J, Zhao JM, Park SY, Chory J, Jacobsen SE. PMID: 30739798; PMCID: PMC6386582.
      View in: PubMed   Mentions: 64     Fields:    Translation:AnimalsCells
    58. ADCP1: a novel plant H3K9me2 reader. Cell Res. 2019 01; 29(1):6-7. Harris CJ, Jacobsen SE. PMID: 30514899; PMCID: PMC6318331.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    59. The TFAP2C-Regulated OCT4 Naive Enhancer Is Involved in Human Germline Formation. Cell Rep. 2018 12 26; 25(13):3591-3602.e5. Chen D, Liu W, Zimmerman J, Pastor WA, Kim R, Hosohama L, Ho J, Aslanyan M, Gell JJ, Jacobsen SE, Clark AT. PMID: 30590035; PMCID: PMC6342560.
      View in: PubMed   Mentions: 34     Fields:    Translation:HumansCells
    60. A DNA methylation reader complex that enhances gene transcription. Science. 2018 12 07; 362(6419):1182-1186. Harris CJ, Scheibe M, Wongpalee SP, Liu W, Cornett EM, Vaughan RM, Li X, Chen W, Xue Y, Zhong Z, Yen L, Barshop WD, Rayatpisheh S, Gallego-Bartolome J, Groth M, Wang Z, Wohlschlegel JA, Du J, Rothbart SB, Butter F, Jacobsen SE. PMID: 30523112; PMCID: PMC6353633.
      View in: PubMed   Mentions: 102     Fields:    Translation:AnimalsCells
    61. A Nucleosome Bridging Mechanism for Activation of a Maintenance DNA Methyltransferase. Mol Cell. 2019 01 03; 73(1):73-83.e6. Stoddard CI, Feng S, Campbell MG, Liu W, Wang H, Zhong X, Bernatavichute Y, Cheng Y, Jacobsen SE, Narlikar GJ. PMID: 30415948; PMCID: PMC6407616.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    62. The impact and prospect of natural product discovery in agriculture: New technologies to explore the diversity of secondary metabolites in plants and microorganisms for applications in agriculture. EMBO Rep. 2018 11; 19(11). Yan Y, Liu Q, Jacobsen SE, Tang Y. PMID: 30361392; PMCID: PMC6216283.
      View in: PubMed   Mentions: 10     Fields:    Translation:Animals
    63. Mechanistic insights into plant SUVH family H3K9 methyltransferases and their binding to context-biased non-CG DNA methylation. Proc Natl Acad Sci U S A. 2018 09 11; 115(37):E8793-E8802. Li X, Harris CJ, Zhong Z, Chen W, Liu R, Jia B, Wang Z, Li S, Jacobsen SE, Du J. PMID: 30150382; PMCID: PMC6140468.
      View in: PubMed   Mentions: 43     Fields:    Translation:AnimalsCells
    64. Epigenome-wide association in adipose tissue from the METSIM cohort. Hum Mol Genet. 2018 07 15; 27(14):2586. Orozco LD, Farrell C, Hale C, Rubbi L, Rinaldi A, Civelek M, Pan C, Lam L, Montoya D, Edillor C, Seldin M, Boehnke M, Mohlke KL, Jacobsen S, Kuusisto J, Laakso M, Lusis AJ, Pellegrini M. PMID: 29893869; PMCID: PMC6030960.
      View in: PubMed   Mentions: 9     Fields:    
    65. Resistance-gene-directed discovery of a natural-product herbicide with a new mode of action. Nature. 2018 07; 559(7714):415-418. Yan Y, Liu Q, Zang X, Yuan S, Bat-Erdene U, Nguyen C, Gan J, Zhou J, Jacobsen SE, Tang Y. PMID: 29995859; PMCID: PMC6097235.
      View in: PubMed   Mentions: 76     Fields:    Translation:Animals
    66. Epigenome-wide association in adipose tissue from the METSIM cohort. Hum Mol Genet. 2018 05 15; 27(10):1830-1846. Orozco LD, Farrell C, Hale C, Rubbi L, Rinaldi A, Civelek M, Pan C, Lam L, Montoya D, Edillor C, Seldin M, Boehnke M, Mohlke KL, Jacobsen S, Kuusisto J, Laakso M, Lusis AJ, Pellegrini M. PMID: 29566149; PMCID: PMC5932563.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansCells
    67. TFAP2C regulates transcription in human naive pluripotency by opening enhancers. Nat Cell Biol. 2018 05; 20(5):553-564. Pastor WA, Liu W, Chen D, Ho J, Kim R, Hunt TJ, Lukianchikov A, Liu X, Polo JM, Jacobsen SE, Clark AT. PMID: 29695788; PMCID: PMC5926822.
      View in: PubMed   Mentions: 83     Fields:    Translation:HumansAnimalsCells
    68. Targeted DNA demethylation of the Arabidopsis genome using the human TET1 catalytic domain. Proc Natl Acad Sci U S A. 2018 02 27; 115(9):E2125-E2134. Gallego-Bartolomé J, Gardiner J, Liu W, Papikian A, Ghoshal B, Kuo HY, Zhao JM, Segal DJ, Jacobsen SE. PMID: 29444862; PMCID: PMC5834696.
      View in: PubMed   Mentions: 88     Fields:    Translation:HumansAnimalsCells
    69. RNA-directed DNA methylation involves co-transcriptional small-RNA-guided slicing of polymerase V transcripts in Arabidopsis. Nat Plants. 2018 03; 4(3):181-188. Liu W, Duttke SH, Hetzel J, Groth M, Feng S, Gallego-Bartolome J, Zhong Z, Kuo HY, Wang Z, Zhai J, Chory J, Jacobsen SE. PMID: 29379150; PMCID: PMC5832601.
      View in: PubMed   Mentions: 54     Fields:    Translation:AnimalsCells
    70. Large-scale comparative epigenomics reveals hierarchical regulation of non-CG methylation in Arabidopsis. Proc Natl Acad Sci U S A. 2018 01 30; 115(5):E1069-E1074. Zhang Y, Harris CJ, Liu Q, Liu W, Ausin I, Long Y, Xiao L, Feng L, Chen X, Xie Y, Chen X, Zhan L, Feng S, Li JJ, Wang H, Zhai J, Jacobsen SE. PMID: 29339507; PMCID: PMC5798360.
      View in: PubMed   Mentions: 31     Fields:    Translation:AnimalsCells
    71. Correction: In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse. Elife. 2017 08 31; 6. Morselli M, Pastor WA, Montanini B, Nee K, Ferrari R, Fu K, Bonora G, Rubbi L, Clark AT, Ottonello S, Jacobsen SE, Pellegrini M. PMID: 28858608; PMCID: PMC5578735.
      View in: PubMed   Mentions: 1     Fields:    
    72. MORC-1 Integrates Nuclear RNAi and Transgenerational Chromatin Architecture to Promote Germline Immortality. Dev Cell. 2017 05 22; 41(4):408-423.e7. Weiser NE, Yang DX, Feng S, Kalinava N, Brown KC, Khanikar J, Freeberg MA, Snyder MJ, Csankovszki G, Chan RC, Gu SG, Montgomery TA, Jacobsen SE, Kim JK. PMID: 28535375; PMCID: PMC5527976.
      View in: PubMed   Mentions: 28     Fields:    Translation:AnimalsCells
    73. The histone H3 variant H3.3 regulates gene body DNA methylation in Arabidopsis thaliana. Genome Biol. 2017 05 18; 18(1):94. Wollmann H, Stroud H, Yelagandula R, Tarutani Y, Jiang D, Jing L, Jamge B, Takeuchi H, Holec S, Nie X, Kakutani T, Jacobsen SE, Berger F. PMID: 28521766; PMCID: PMC5437678.
      View in: PubMed   Mentions: 54     Fields:    Translation:AnimalsCells
    74. Corrigendum: SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation. Nature. 2017 03 02; 543(7643):136. Johnson LM, Du J, Hale CJ, Bischof S, Feng S, Chodavarapu RK, Zhong X, Marson G, Pellegrini M, Segal DJ, Patel DJ, Jacobsen SE. PMID: 28178234.
      View in: PubMed   Mentions:    Fields:    
    75. Germline competency of human embryonic stem cells depends on eomesodermin. Biol Reprod. 2017 01 01; 97(6):850-861. Chen D, Liu W, Lukianchikov A, Hancock GV, Zimmerman J, Lowe MG, Kim R, Galic Z, Irie N, Surani MA, Jacobsen SE, Clark AT. PMID: 29091993; PMCID: PMC5803789.
      View in: PubMed   Mentions: 48     Fields:    Translation:HumansCells
    76. Large-scale heterochromatin remodeling linked to overreplication-associated DNA damage. Proc Natl Acad Sci U S A. 2017 01 10; 114(2):406-411. Feng W, Hale CJ, Over RS, Cokus SJ, Jacobsen SE, Michaels SD. PMID: 28028228; PMCID: PMC5240675.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    77. Evidence for ARGONAUTE4-DNA interactions in RNA-directed DNA methylation in plants. Genes Dev. 2016 12 01; 30(23):2565-2570. Lahmy S, Pontier D, Bies-Etheve N, Laudié M, Feng S, Jobet E, Hale CJ, Cooke R, Hakimi MA, Angelov D, Jacobsen SE, Lagrange T. PMID: 27986858; PMCID: PMC5204349.
      View in: PubMed   Mentions: 33     Fields:    Translation:Cells
    78. DNA methylome of the 20-gigabase Norway spruce genome. Proc Natl Acad Sci U S A. 2016 12 13; 113(50):E8106-E8113. Ausin I, Feng S, Yu C, Liu W, Kuo HY, Jacobsen EL, Zhai J, Gallego-Bartolome J, Wang L, Egertsdotter U, Street NR, Jacobsen SE, Wang H. PMID: 27911846; PMCID: PMC5167160.
      View in: PubMed   Mentions: 44     Fields:    Translation:AnimalsCells
    79. Mouse MORC3 is a GHKL ATPase that localizes to H3K4me3 marked chromatin. Proc Natl Acad Sci U S A. 2016 08 30; 113(35):E5108-16. Li S, Yen L, Pastor WA, Johnston JB, Du J, Shew CJ, Liu W, Ho J, Stender B, Clark AT, Burlingame AL, Daxinger L, Patel DJ, Jacobsen SE. PMID: 27528681; PMCID: PMC5024608.
      View in: PubMed   Mentions: 24     Fields:    Translation:AnimalsCells
    80. On the origin and evolutionary consequences of gene body DNA methylation. Proc Natl Acad Sci U S A. 2016 08 09; 113(32):9111-6. Bewick AJ, Ji L, Niederhuth CE, Willing EM, Hofmeister BT, Shi X, Wang L, Lu Z, Rohr NA, Hartwig B, Kiefer C, Deal RB, Schmutz J, Grimwood J, Stroud H, Jacobsen SE, Schneeberger K, Zhang X, Schmitz RJ. PMID: 27457936; PMCID: PMC4987809.
      View in: PubMed   Mentions: 132     Fields:    Translation:AnimalsCells
    81. MTHFD1 controls DNA methylation in Arabidopsis. Nat Commun. 2016 06 13; 7:11640. Groth M, Moissiard G, Wirtz M, Wang H, Garcia-Salinas C, Ramos-Parra PA, Bischof S, Feng S, Cokus SJ, John A, Smith DC, Zhai J, Hale CJ, Long JA, Hell R, Díaz de la Garza RI, Jacobsen SE. PMID: 27291711; PMCID: PMC4909953.
      View in: PubMed   Mentions: 26     Fields:    Translation:AnimalsCells
    82. Identification of Multiple Proteins Coupling Transcriptional Gene Silencing to Genome Stability in Arabidopsis thaliana. PLoS Genet. 2016 06; 12(6):e1006092. Hale CJ, Potok ME, Lopez J, Do T, Liu A, Gallego-Bartolome J, Michaels SD, Jacobsen SE. PMID: 27253878; PMCID: PMC4890748.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    83. Arabidopsis AtMORC4 and AtMORC7 Form Nuclear Bodies and Repress a Large Number of Protein-Coding Genes. PLoS Genet. 2016 05; 12(5):e1005998. Harris CJ, Husmann D, Liu W, Kasmi FE, Wang H, Papikian A, Pastor WA, Moissiard G, Vashisht AA, Dangl JL, Wohlschlegel JA, Jacobsen SE. PMID: 27171361; PMCID: PMC4865129.
      View in: PubMed   Mentions: 24     Fields:    Translation:AnimalsCells
    84. Structural Basis for the Unique Multivalent Readout of Unmodified H3 Tail by Arabidopsis ORC1b BAH-PHD Cassette. Structure. 2016 Mar 01; 24(3):486-94. Li S, Yang Z, Du X, Liu R, Wilkinson AW, Gozani O, Jacobsen SE, Patel DJ, Du J. PMID: 26876097; PMCID: PMC4775424.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    85. Naive Human Pluripotent Cells Feature a Methylation Landscape Devoid of Blastocyst or Germline Memory. Cell Stem Cell. 2016 Mar 03; 18(3):323-329. Pastor WA, Chen D, Liu W, Kim R, Sahakyan A, Lukianchikov A, Plath K, Jacobsen SE, Clark AT. PMID: 26853856; PMCID: PMC4779431.
      View in: PubMed   Mentions: 141     Fields:    Translation:HumansAnimalsCells
    86. CG gene body DNA methylation changes and evolution of duplicated genes in cassava. Proc Natl Acad Sci U S A. 2015 Nov 03; 112(44):13729-34. Wang H, Beyene G, Zhai J, Feng S, Fahlgren N, Taylor NJ, Bart R, Carrington JC, Jacobsen SE, Ausin I. PMID: 26483493; PMCID: PMC4640745.
      View in: PubMed   Mentions: 71     Fields:    Translation:AnimalsCells
    87. A One Precursor One siRNA Model for Pol IV-Dependent siRNA Biogenesis. Cell. 2015 Oct 08; 163(2):445-55. Zhai J, Bischof S, Wang H, Feng S, Lee TF, Teng C, Chen X, Park SY, Liu L, Gallego-Bartolome J, Liu W, Henderson IR, Meyers BC, Ausin I, Jacobsen SE. PMID: 26451488; PMCID: PMC5023148.
      View in: PubMed   Mentions: 119     Fields:    Translation:AnimalsCells
    88. DNA methylation pathways and their crosstalk with histone methylation. Nat Rev Mol Cell Biol. 2015 Sep; 16(9):519-32. Du J, Johnson LM, Jacobsen SE, Patel DJ. PMID: 26296162; PMCID: PMC4672940.
      View in: PubMed   Mentions: 392     Fields:    Translation:HumansAnimalsCells
    89. Increasing Nucleosome Occupancy Is Correlated with an Increasing Mutation Rate so Long as DNA Repair Machinery Is Intact. PLoS One. 2015; 10(8):e0136574. Yazdi PG, Pedersen BA, Taylor JF, Khattab OS, Chen YH, Chen Y, Jacobsen SE, Wang PH. PMID: 26308346; PMCID: PMC4550472.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansCells
    90. Nucleosome Organization in Human Embryonic Stem Cells. PLoS One. 2015; 10(8):e0136314. Yazdi PG, Pedersen BA, Taylor JF, Khattab OS, Chen YH, Chen Y, Jacobsen SE, Wang PH. PMID: 26305225; PMCID: PMC4549264.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansCells
    91. Erratum: MORC1 represses transposable elements in the mouse male germline. Nat Commun. 2015 Jul 10; 6:7604. Pastor WA, Stroud H, Nee K, Liu W, Pezic D, Manakov S, Lee SA, Moissiard G, Zamudio N, Bourc'his D, Aravin AA, Clark AT, Jacobsen SE. PMID: 26159654; PMCID: PMC5784397.
      View in: PubMed   Mentions: 3     Fields:    
    92. C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Cell Discov. 2015; 1. Zhang S, Zhou B, Kang Y, Cui X, Liu A, Deleris A, Greenberg MV, Cui X, Qiu Q, Lu F, Wohlschlegel JA, Jacobsen SE, Cao X. PMID: 26617990; PMCID: PMC4659397.
      View in: PubMed   Mentions: 24  
    93. In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse. Elife. 2015 Apr 07; 4:e06205. Morselli M, Pastor WA, Montanini B, Nee K, Ferrari R, Fu K, Bonora G, Rubbi L, Clark AT, Ottonello S, Jacobsen SE, Pellegrini M. PMID: 25848745; PMCID: PMC4412109.
      View in: PubMed   Mentions: 86     Fields:    Translation:AnimalsCells
    94. Domains rearranged methyltransferase3 controls DNA methylation and regulates RNA polymerase V transcript abundance in Arabidopsis. Proc Natl Acad Sci U S A. 2015 Jan 20; 112(3):911-6. Zhong X, Hale CJ, Nguyen M, Ausin I, Groth M, Hetzel J, Vashisht AA, Henderson IR, Wohlschlegel JA, Jacobsen SE. PMID: 25561521; PMCID: PMC4311829.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    95. Rare allele of a previously unidentified histone H4 acetyltransferase enhances grain weight, yield, and plant biomass in rice. Proc Natl Acad Sci U S A. 2015 Jan 06; 112(1):76-81. Song XJ, Kuroha T, Ayano M, Furuta T, Nagai K, Komeda N, Segami S, Miura K, Ogawa D, Kamura T, Suzuki T, Higashiyama T, Yamasaki M, Mori H, Inukai Y, Wu J, Kitano H, Sakakibara H, Jacobsen SE, Ashikari M. PMID: 25535376; PMCID: PMC4291654.
      View in: PubMed   Mentions: 111     Fields:    Translation:HumansAnimalsCells
    96. MORC1 represses transposable elements in the mouse male germline. Nat Commun. 2014 Dec 12; 5:5795. Pastor WA, Stroud H, Nee K, Liu W, Pezic D, Manakov S, Lee SA, Moissiard G, Zamudio N, Bourc'his D, Aravin AA, Clark AT, Jacobsen SE. PMID: 25503965; PMCID: PMC4268658.
      View in: PubMed   Mentions: 65     Fields:    Translation:AnimalsCells
    97. SNF2 chromatin remodeler-family proteins FRG1 and -2 are required for RNA-directed DNA methylation. Proc Natl Acad Sci U S A. 2014 Dec 09; 111(49):17666-71. Groth M, Stroud H, Feng S, Greenberg MV, Vashisht AA, Wohlschlegel JA, Jacobsen SE, Ausin I. PMID: 25425661; PMCID: PMC4267348.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    98. Genome-wide Hi-C analyses in wild-type and mutants reveal high-resolution chromatin interactions in Arabidopsis. Mol Cell. 2014 Sep 04; 55(5):694-707. Feng S, Cokus SJ, Schubert V, Zhai J, Pellegrini M, Jacobsen SE. PMID: 25132175; PMCID: PMC4347903.
      View in: PubMed   Mentions: 142     Fields:    Translation:AnimalsCells
    99. Dissecting the dynamic changes of 5-hydroxymethylcytosine in T-cell development and differentiation. Proc Natl Acad Sci U S A. 2014 Aug 12; 111(32):E3306-15. Tsagaratou A, Äijö T, Lio CW, Yue X, Huang Y, Jacobsen SE, Lähdesmäki H, Rao A. PMID: 25071199; PMCID: PMC4136618.
      View in: PubMed   Mentions: 94     Fields:    Translation:AnimalsCells
    100. Mechanism of DNA methylation-directed histone methylation by KRYPTONITE. Mol Cell. 2014 Aug 07; 55(3):495-504. Du J, Johnson LM, Groth M, Feng S, Hale CJ, Li S, Vashisht AA, Wohlschlegel JA, Patel DJ, Jacobsen SE. PMID: 25018018; PMCID: PMC4127122.
      View in: PubMed   Mentions: 93     Fields:    Translation:AnimalsCells
    101. The histone variant H2A.W defines heterochromatin and promotes chromatin condensation in Arabidopsis. Cell. 2014 Jul 03; 158(1):98-109. Yelagandula R, Stroud H, Holec S, Zhou K, Feng S, Zhong X, Muthurajan UM, Nie X, Kawashima T, Groth M, Luger K, Jacobsen SE, Berger F. PMID: 24995981; PMCID: PMC4671829.
      View in: PubMed   Mentions: 118     Fields:    Translation:AnimalsCells
    102. The Functional Topography of the Arabidopsis Genome Is Organized in a Reduced Number of Linear Motifs of Chromatin States. Plant Cell. 2014 Jun; 26(6):2351-2366. Sequeira-Mendes J, Aragüez I, Peiró R, Mendez-Giraldez R, Zhang X, Jacobsen SE, Bastolla U, Gutierrez C. PMID: 24934173; PMCID: PMC4114938.
      View in: PubMed   Mentions: 131     Fields:    
    103. Molecular mechanism of action of plant DRM de novo DNA methyltransferases. Cell. 2014 May 22; 157(5):1050-60. Zhong X, Du J, Hale CJ, Gallego-Bartolome J, Feng S, Vashisht AA, Chory J, Wohlschlegel JA, Patel DJ, Jacobsen SE. PMID: 24855943; PMCID: PMC4123750.
      View in: PubMed   Mentions: 131     Fields:    Translation:AnimalsCells
    104. Transcriptional gene silencing by Arabidopsis microrchidia homologues involves the formation of heteromers. Proc Natl Acad Sci U S A. 2014 May 20; 111(20):7474-9. Moissiard G, Bischof S, Husmann D, Pastor WA, Hale CJ, Yen L, Stroud H, Papikian A, Vashisht AA, Wohlschlegel JA, Jacobsen SE. PMID: 24799676; PMCID: PMC4034193.
      View in: PubMed   Mentions: 36     Fields:    Translation:AnimalsCells
    105. SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation. Nature. 2014 03 06; 507(7490):124-128. Johnson LM, Du J, Hale CJ, Bischof S, Feng S, Chodavarapu RK, Zhong X, Marson G, Pellegrini M, Segal DJ, Patel DJ, Jacobsen SE. PMID: 24463519; PMCID: PMC3963826.
      View in: PubMed   Mentions: 151     Fields:    Translation:AnimalsCells
    106. Distinct roles of the methylcytosine oxidases Tet1 and Tet2 in mouse embryonic stem cells. Proc Natl Acad Sci U S A. 2014 Jan 28; 111(4):1361-6. Huang Y, Chavez L, Chang X, Wang X, Pastor WA, Kang J, Zepeda-Martínez JA, Pape UJ, Jacobsen SE, Peters B, Rao A. PMID: 24474761; PMCID: PMC3910590.
      View in: PubMed   Mentions: 147     Fields:    Translation:AnimalsCells
    107. Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis. Nat Struct Mol Biol. 2014 Jan; 21(1):64-72. Stroud H, Do T, Du J, Zhong X, Feng S, Johnson L, Patel DJ, Jacobsen SE. PMID: 24336224; PMCID: PMC4103798.
      View in: PubMed   Mentions: 390     Fields:    Translation:AnimalsCells
    108. Interplay between active chromatin marks and RNA-directed DNA methylation in Arabidopsis thaliana. PLoS Genet. 2013 Nov; 9(11):e1003946. Greenberg MV, Deleris A, Hale CJ, Liu A, Feng S, Jacobsen SE. PMID: 24244201; PMCID: PMC3820799.
      View in: PubMed   Mentions: 39     Fields:    Translation:AnimalsCells
    109. Epigenetic differences between shoots and roots in Arabidopsis reveals tissue-specific regulation. Epigenetics. 2014 Feb; 9(2):236-42. Widman N, Feng S, Jacobsen SE, Pellegrini M. PMID: 24169618; PMCID: PMC3962533.
      View in: PubMed   Mentions: 24     Fields:    Translation:AnimalsCells
    110. RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee. Proc Natl Acad Sci U S A. 2013 Jul 30; 110(31):12750-5. Li-Byarlay H, Li Y, Stroud H, Feng S, Newman TC, Kaneda M, Hou KK, Worley KC, Elsik CG, Wickline SA, Jacobsen SE, Ma J, Robinson GE. PMID: 23852726; PMCID: PMC3732956.
      View in: PubMed   Mentions: 112     Fields:    Translation:AnimalsCells
    111. Intrauterine calorie restriction affects placental DNA methylation and gene expression. Physiol Genomics. 2013 Jul 15; 45(14):565-76. Chen PY, Ganguly A, Rubbi L, Orozco LD, Morselli M, Ashraf D, Jaroszewicz A, Feng S, Jacobsen SE, Nakano A, Devaskar SU, Pellegrini M. PMID: 23695884; PMCID: PMC3727019.
      View in: PubMed   Mentions: 49     Fields:    Translation:AnimalsCells
    112. Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1. Nature. 2013 Jun 20; 498(7454):385-9. Law JA, Du J, Hale CJ, Feng S, Krajewski K, Palanca AM, Strahl BD, Patel DJ, Jacobsen SE. PMID: 23636332; PMCID: PMC4119789.
      View in: PubMed   Mentions: 173     Fields:    Translation:AnimalsCells
    113. Plants regenerated from tissue culture contain stable epigenome changes in rice. Elife. 2013 Mar 19; 2:e00354. Stroud H, Ding B, Simon SA, Feng S, Bellizzi M, Pellegrini M, Wang GL, Meyers BC, Jacobsen SE. PMID: 23539454; PMCID: PMC3601819.
      View in: PubMed   Mentions: 107     Fields:    Translation:AnimalsCells
    114. Stage-specific roles for tet1 and tet2 in DNA demethylation in primordial germ cells. Cell Stem Cell. 2013 Apr 04; 12(4):470-8. Vincent JJ, Huang Y, Chen PY, Feng S, Calvopiña JH, Nee K, Lee SA, Le T, Yoon AJ, Faull K, Fan G, Rao A, Jacobsen SE, Pellegrini M, Clark AT. PMID: 23415914; PMCID: PMC3684274.
      View in: PubMed   Mentions: 84     Fields:    Translation:AnimalsCells
    115. A matrix protein silences transposons and repeats through interaction with retinoblastoma-associated proteins. Curr Biol. 2013 Feb 18; 23(4):345-50. Xu Y, Wang Y, Stroud H, Gu X, Sun B, Gan ES, Ng KH, Jacobsen SE, He Y, Ito T. PMID: 23394836.
      View in: PubMed   Mentions: 24     Fields:    Translation:AnimalsCells
    116. Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome. Cell. 2013 Jan 17; 152(1-2):352-64. Stroud H, Greenberg MV, Feng S, Bernatavichute YV, Jacobsen SE. PMID: 23313553; PMCID: PMC3597350.
      View in: PubMed   Mentions: 436     Fields:    Translation:AnimalsCells
    117. Loss of the DNA methyltransferase MET1 Induces H3K9 hypermethylation at PcG target genes and redistribution of H3K27 trimethylation to transposons in Arabidopsis thaliana. PLoS Genet. 2012; 8(11):e1003062. Deleris A, Stroud H, Bernatavichute Y, Johnson E, Klein G, Schubert D, Jacobsen SE. PMID: 23209430; PMCID: PMC3510029.
      View in: PubMed   Mentions: 91     Fields:    Translation:AnimalsCells
    118. The SET-domain protein SUVR5 mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation-independent manner. PLoS Genet. 2012; 8(10):e1002995. Caro E, Stroud H, Greenberg MV, Bernatavichute YV, Feng S, Groth M, Vashisht AA, Wohlschlegel J, Jacobsen SE. PMID: 23071452; PMCID: PMC3469426.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    119. Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants. Cell. 2012 Sep 28; 151(1):167-80. Du J, Zhong X, Bernatavichute YV, Stroud H, Feng S, Caro E, Vashisht AA, Terragni J, Chin HG, Tu A, Hetzel J, Wohlschlegel JA, Pradhan S, Patel DJ, Jacobsen SE. PMID: 23021223; PMCID: PMC3471781.
      View in: PubMed   Mentions: 242     Fields:    Translation:AnimalsCells
    120. Features of the Arabidopsis recombination landscape resulting from the combined loss of sequence variation and DNA methylation. Proc Natl Acad Sci U S A. 2012 Oct 02; 109(40):16240-5. Colomé-Tatché M, Cortijo S, Wardenaar R, Morgado L, Lahouze B, Sarazin A, Etcheverry M, Martin A, Feng S, Duvernois-Berthet E, Labadie K, Wincker P, Jacobsen SE, Jansen RC, Colot V, Johannes F. PMID: 22988127; PMCID: PMC3479620.
      View in: PubMed   Mentions: 72     Fields:    Translation:AnimalsCells
    121. DDR complex facilitates global association of RNA polymerase V to promoters and evolutionarily young transposons. Nat Struct Mol Biol. 2012 Sep; 19(9):870-5. Zhong X, Hale CJ, Law JA, Johnson LM, Feng S, Tu A, Jacobsen SE. PMID: 22864289; PMCID: PMC3443314.
      View in: PubMed   Mentions: 107     Fields:    Translation:AnimalsCells
    122. Transcriptome and methylome interactions in rice hybrids. Proc Natl Acad Sci U S A. 2012 Jul 24; 109(30):12040-5. Chodavarapu RK, Feng S, Ding B, Simon SA, Lopez D, Jia Y, Wang GL, Meyers BC, Jacobsen SE, Pellegrini M. PMID: 22778444; PMCID: PMC3409791.
      View in: PubMed   Mentions: 96     Fields:    Translation:AnimalsCells
    123. DNA methyltransferases are required to induce heterochromatic re-replication in Arabidopsis. PLoS Genet. 2012 Jul; 8(7):e1002808. Stroud H, Hale CJ, Feng S, Caro E, Jacob Y, Michaels SD, Jacobsen SE. PMID: 22792077; PMCID: PMC3390372.
      View in: PubMed   Mentions: 46     Fields:    Translation:AnimalsCells
    124. A unified phylogeny-based nomenclature for histone variants. Epigenetics Chromatin. 2012 Jun 21; 5:7. Talbert PB, Ahmad K, Almouzni G, Ausió J, Berger F, Bhalla PL, Bonner WM, Cande WZ, Chadwick BP, Chan SW, Cross GA, Cui L, Dimitrov SI, Doenecke D, Eirin-López JM, Gorovsky MA, Hake SB, Hamkalo BA, Holec S, Jacobsen SE, Kamieniarz K, Khochbin S, Ladurner AG, Landsman D, Latham JA, Loppin B, Malik HS, Marzluff WF, Pehrson JR, Postberg J, Schneider R, Singh MB, Smith MM, Thompson E, Torres-Padilla ME, Tremethick DJ, Turner BM, Waterborg JH, Wollmann H, Yelagandula R, Zhu B, Henikoff S. PMID: 22650316; PMCID: PMC3380720.
      View in: PubMed   Mentions: 145     Fields:    
    125. INVOLVED IN DE NOVO 2-containing complex involved in RNA-directed DNA methylation in Arabidopsis. Proc Natl Acad Sci U S A. 2012 May 29; 109(22):8374-81. Ausin I, Greenberg MV, Simanshu DK, Hale CJ, Vashisht AA, Simon SA, Lee TF, Feng S, Española SD, Meyers BC, Wohlschlegel JA, Patel DJ, Jacobsen SE. PMID: 22592791; PMCID: PMC3365198.
      View in: PubMed   Mentions: 51     Fields:    Translation:AnimalsCells
    126. MORC family ATPases required for heterochromatin condensation and gene silencing. Science. 2012 Jun 15; 336(6087):1448-51. Moissiard G, Cokus SJ, Cary J, Feng S, Billi AC, Stroud H, Husmann D, Zhan Y, Lajoie BR, McCord RP, Hale CJ, Feng W, Michaels SD, Frand AR, Pellegrini M, Dekker J, Kim JK, Jacobsen SE. PMID: 22555433; PMCID: PMC3376212.
      View in: PubMed   Mentions: 162     Fields:    Translation:AnimalsCells
    127. Histone methyltransferases regulating rRNA gene dose and dosage control in Arabidopsis. Genes Dev. 2012 May 01; 26(9):945-57. Pontvianne F, Blevins T, Chandrasekhara C, Feng W, Stroud H, Jacobsen SE, Michaels SD, Pikaard CS. PMID: 22549957; PMCID: PMC3347792.
      View in: PubMed   Mentions: 48     Fields:    Translation:AnimalsCells
    128. Opening the door to epigenetics in PCP. Plant Cell Physiol. 2012 May; 53(5):763-5. Kinoshita T, Jacobsen SE. PMID: 22566217; PMCID: PMC3530370.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    129. Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana. Proc Natl Acad Sci U S A. 2012 Apr 03; 109(14):5370-5. Stroud H, Otero S, Desvoyes B, Ramírez-Parra E, Jacobsen SE, Gutierrez C. PMID: 22431625; PMCID: PMC3325649.
      View in: PubMed   Mentions: 111     Fields:    Translation:AnimalsCells
    130. DNA methylation dynamics, metabolic fluxes, gene splicing, and alternative phenotypes in honey bees. Proc Natl Acad Sci U S A. 2012 Mar 27; 109(13):4968-73. Foret S, Kucharski R, Pellegrini M, Feng S, Jacobsen SE, Robinson GE, Maleszka R. PMID: 22416128; PMCID: PMC3324026.
      View in: PubMed   Mentions: 132     Fields:    Translation:AnimalsCells
    131. Plant biology: Equal-parenting policy. Nature. 2012 Jan 22; 482(7383):42-4. Hale CJ, Jacobsen SE. PMID: 22266937.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    132. The splicing factor SR45 affects the RNA-directed DNA methylation pathway in Arabidopsis. Epigenetics. 2012 Jan 01; 7(1):29-33. Ausin I, Greenberg MV, Li CF, Jacobsen SE. PMID: 22274613; PMCID: PMC3329499.
      View in: PubMed   Mentions: 28     Fields:    Translation:AnimalsCells
    133. Association of plasma renin activity and aldosterone-renin ratio with prevalence of chronic kidney disease: the Kaiser Permanente Southern California cohort. J Hypertens. 2011 Nov; 29(11):2226-35. Sim JJ, Shi J, Calara F, Rasgon S, Jacobsen S, Kalantar-Zadeh K. PMID: 21941205.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    134. SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV. PLoS Genet. 2011 Jul; 7(7):e1002195. Law JA, Vashisht AA, Wohlschlegel JA, Jacobsen SE. PMID: 21811420; PMCID: PMC3141008.
      View in: PubMed   Mentions: 106     Fields:    Translation:AnimalsCells
    135. A comparative analysis of DNA methylation across human embryonic stem cell lines. Genome Biol. 2011 Jul 06; 12(7):R62. Chen PY, Feng S, Joo JW, Jacobsen SE, Pellegrini M. PMID: 21733148; PMCID: PMC3218824.
      View in: PubMed   Mentions: 51     Fields:    Translation:HumansCells
    136. 5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells. Genome Biol. 2011 Jun 20; 12(6):R54. Stroud H, Feng S, Morey Kinney S, Pradhan S, Jacobsen SE. PMID: 21689397; PMCID: PMC3218842.
      View in: PubMed   Mentions: 254     Fields:    Translation:HumansCells
    137. Tissue-specific distribution and dynamic changes of 5-hydroxymethylcytosine in mammalian genomes. J Biol Chem. 2011 Jul 15; 286(28):24685-93. Kinney SM, Chin HG, Vaisvila R, Bitinaite J, Zheng Y, Estève PO, Feng S, Stroud H, Jacobsen SE, Pradhan S. PMID: 21610077; PMCID: PMC3137044.
      View in: PubMed   Mentions: 69     Fields:    Translation:HumansAnimalsCells
    138. Identification of genes required for de novo DNA methylation in Arabidopsis. Epigenetics. 2011 Mar; 6(3):344-54. Greenberg MV, Ausin I, Chan SW, Cokus SJ, Cuperus JT, Feng S, Law JA, Chu C, Pellegrini M, Carrington JC, Jacobsen SE. PMID: 21150311; PMCID: PMC3092683.
      View in: PubMed   Mentions: 44     Fields:    Translation:AnimalsCells
    139. Genome-wide mapping of Arabidopsis thaliana origins of DNA replication and their associated epigenetic marks. Nat Struct Mol Biol. 2011 Mar; 18(3):395-400. Costas C, de la Paz Sanchez M, Stroud H, Yu Y, Oliveros JC, Feng S, Benguria A, López-Vidriero I, Zhang X, Solano R, Jacobsen SE, Gutierrez C. PMID: 21297636; PMCID: PMC3079358.
      View in: PubMed   Mentions: 66     Fields:    Translation:AnimalsCells
    140. A dual flip-out mechanism for 5mC recognition by the Arabidopsis SUVH5 SRA domain and its impact on DNA methylation and H3K9 dimethylation in vivo. Genes Dev. 2011 Jan 15; 25(2):137-52. Rajakumara E, Law JA, Simanshu DK, Voigt P, Johnson LM, Reinberg D, Patel DJ, Jacobsen SE. PMID: 21245167; PMCID: PMC3022260.
      View in: PubMed   Mentions: 64     Fields:    Translation:AnimalsCells
    141. 6-Thioguanine reactivates epigenetically silenced genes in acute lymphoblastic leukemia cells by facilitating proteasome-mediated degradation of DNMT1. Cancer Res. 2011 Mar 01; 71(5):1904-11. Yuan B, Zhang J, Wang H, Xiong L, Cai Q, Wang T, Jacobsen S, Pradhan S, Wang Y. PMID: 21239472; PMCID: PMC3049985.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansCells
    142. Epigenetic modifications in plants: an evolutionary perspective. Curr Opin Plant Biol. 2011 Apr; 14(2):179-86. Feng S, Jacobsen SE. PMID: 21233005; PMCID: PMC3097131.
      View in: PubMed   Mentions: 90     Fields:    Translation:AnimalsCells
    143. Determining DNA methylation profiles using sequencing. Methods Mol Biol. 2011; 733:223-38. Feng S, Rubbi L, Jacobsen SE, Pellegrini M. PMID: 21431774.
      View in: PubMed   Mentions: 26     Fields:    Translation:Cells
    144. Involvement of a Jumonji-C domain-containing histone demethylase in DRM2-mediated maintenance of DNA methylation. EMBO Rep. 2010 Dec; 11(12):950-5. Deleris A, Greenberg MV, Ausin I, Law RW, Moissiard G, Schubert D, Jacobsen SE. PMID: 21052090; PMCID: PMC2999860.
      View in: PubMed   Mentions: 38     Fields:    Translation:AnimalsCells
    145. Epigenetic reprogramming in plant and animal development. Science. 2010 Oct 29; 330(6004):622-7. Feng S, Jacobsen SE, Reik W. PMID: 21030646; PMCID: PMC2989926.
      View in: PubMed   Mentions: 462     Fields:    Translation:AnimalsCells
    146. The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana. PLoS Genet. 2010 Oct 28; 6(10):e1001182. Henderson IR, Deleris A, Wong W, Zhong X, Chin HG, Horwitz GA, Kelly KA, Pradhan S, Jacobsen SE. PMID: 21060858; PMCID: PMC2965745.
      View in: PubMed   Mentions: 55     Fields:    Translation:AnimalsCells
    147. Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases. Nature. 2010 Aug 19; 466(7309):987-91. Jacob Y, Stroud H, Leblanc C, Feng S, Zhuo L, Caro E, Hassel C, Gutierrez C, Michaels SD, Jacobsen SE. PMID: 20631708; PMCID: PMC2964344.
      View in: PubMed   Mentions: 93     Fields:    Translation:AnimalsCells
    148. Relationship between nucleosome positioning and DNA methylation. Nature. 2010 Jul 15; 466(7304):388-92. Chodavarapu RK, Feng S, Bernatavichute YV, Chen PY, Stroud H, Yu Y, Hetzel JA, Kuo F, Kim J, Cokus SJ, Casero D, Bernal M, Huijser P, Clark AT, Krämer U, Merchant SS, Zhang X, Jacobsen SE, Pellegrini M. PMID: 20512117; PMCID: PMC2964354.
      View in: PubMed   Mentions: 349     Fields:    Translation:HumansAnimalsCells
    149. A protein complex required for polymerase V transcripts and RNA- directed DNA methylation in Arabidopsis. Curr Biol. 2010 May 25; 20(10):951-6. Law JA, Ausin I, Johnson LM, Vashisht AA, Zhu JK, Wohlschlegel JA, Jacobsen SE. PMID: 20409711; PMCID: PMC2972704.
      View in: PubMed   Mentions: 113     Fields:    Translation:AnimalsCells
    150. Conservation and divergence of methylation patterning in plants and animals. Proc Natl Acad Sci U S A. 2010 May 11; 107(19):8689-94. Feng S, Cokus SJ, Zhang X, Chen PY, Bostick M, Goll MG, Hetzel J, Jain J, Strauss SH, Halpern ME, Ukomadu C, Sadler KC, Pradhan S, Pellegrini M, Jacobsen SE. PMID: 20395551; PMCID: PMC2889301.
      View in: PubMed   Mentions: 577     Fields:    Translation:AnimalsCells
    151. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet. 2010 Mar; 11(3):204-20. Law JA, Jacobsen SE. PMID: 20142834; PMCID: PMC3034103.
      View in: PubMed   Mentions: 1581     Fields:    Translation:AnimalsCells
    152. Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency. Nature. 2010 Feb 25; 463(7284):1101-5. Popp C, Dean W, Feng S, Cokus SJ, Andrews S, Pellegrini M, Jacobsen SE, Reik W. PMID: 20098412; PMCID: PMC2965733.
      View in: PubMed   Mentions: 393     Fields:    Translation:AnimalsCells
    153. Accurate sodium bisulfite sequencing in plants. Epigenetics. 2010 Jan 01; 5(1):47-9. Henderson IR, Chan SR, Cao X, Johnson L, Jacobsen SE. PMID: 20081358; PMCID: PMC2829377.
      View in: PubMed   Mentions: 30     Fields:    Translation:AnimalsCells
    154. IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana. Nat Struct Mol Biol. 2009 Dec; 16(12):1325-7. Ausin I, Mockler TC, Chory J, Jacobsen SE. PMID: 19915591; PMCID: PMC2842998.
      View in: PubMed   Mentions: 61     Fields:    Translation:AnimalsCells
    155. SET7/9 mediated methylation of non-histone proteins in mammalian cells. Epigenetics. 2009 Aug 16; 4(6):383-7. Pradhan S, Chin HG, Estève PO, Jacobsen SE. PMID: 19684477; PMCID: PMC2974562.
      View in: PubMed   Mentions: 62     Fields:    Translation:HumansAnimalsCells
    156. A metastable DWARF1 epigenetic mutant affecting plant stature in rice. Proc Natl Acad Sci U S A. 2009 Jul 07; 106(27):11218-23. Miura K, Agetsuma M, Kitano H, Yoshimura A, Matsuoka M, Jacobsen SE, Ashikari M. PMID: 19541604; PMCID: PMC2708680.
      View in: PubMed   Mentions: 70     Fields:    Translation:AnimalsCells
    157. Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana. Genome Biol. 2009; 10(6):R62. Zhang X, Bernatavichute YV, Cokus S, Pellegrini M, Jacobsen SE. PMID: 19508735; PMCID: PMC2718496.
      View in: PubMed   Mentions: 271     Fields:    Translation:AnimalsCells
    158. ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing. Nat Struct Mol Biol. 2009 Jul; 16(7):763-8. Jacob Y, Feng S, LeBlanc CA, Bernatavichute YV, Stroud H, Cokus S, Johnson LM, Pellegrini M, Jacobsen SE, Michaels SD. PMID: 19503079; PMCID: PMC2754316.
      View in: PubMed   Mentions: 137     Fields:    Translation:AnimalsCells
    159. Molecular biology. Dynamic DNA methylation. Science. 2009 Mar 20; 323(5921):1568-9. Law JA, Jacobsen SE. PMID: 19299607.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    160. Regulation of DNMT1 stability through SET7-mediated lysine methylation in mammalian cells. Proc Natl Acad Sci U S A. 2009 Mar 31; 106(13):5076-81. Estève PO, Chin HG, Benner J, Feehery GR, Samaranayake M, Horwitz GA, Jacobsen SE, Pradhan S. PMID: 19282482; PMCID: PMC2654809.
      View in: PubMed   Mentions: 160     Fields:    Translation:HumansAnimalsCells
    161. Determining the conservation of DNA methylation in Arabidopsis. Epigenetics. 2009 Feb 16; 4(2):119-24. Widman N, Jacobsen SE, Pellegrini M. PMID: 19384058.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    162. Criteria for annotation of plant MicroRNAs. Plant Cell. 2008 Dec; 20(12):3186-90. Meyers BC, Axtell MJ, Bartel B, Bartel DP, Baulcombe D, Bowman JL, Cao X, Carrington JC, Chen X, Green PJ, Griffiths-Jones S, Jacobsen SE, Mallory AC, Martienssen RA, Poethig RS, Qi Y, Vaucheret H, Voinnet O, Watanabe Y, Weigel D, Zhu JK. PMID: 19074682; PMCID: PMC2630443.
      View in: PubMed   Mentions: 636     Fields:    
    163. UHRF1 binds G9a and participates in p21 transcriptional regulation in mammalian cells. Nucleic Acids Res. 2009 Feb; 37(2):493-505. Kim JK, Estève PO, Jacobsen SE, Pradhan S. PMID: 19056828; PMCID: PMC2632929.
      View in: PubMed   Mentions: 116     Fields:    Translation:HumansAnimalsCells
    164. SRA-domain proteins required for DRM2-mediated de novo DNA methylation. PLoS Genet. 2008 Nov; 4(11):e1000280. Johnson LM, Law JA, Khattar A, Henderson IR, Jacobsen SE. PMID: 19043555; PMCID: PMC2582956.
      View in: PubMed   Mentions: 83     Fields:    Translation:AnimalsCells
    165. ORTH/VIM proteins that regulate DNA methylation are functional ubiquitin E3 ligases. Plant J. 2008 Dec; 56(5):704-15. Kraft E, Bostick M, Jacobsen SE, Callis J. PMID: 18643997; PMCID: PMC2973330.
      View in: PubMed   Mentions: 29     Fields:    Translation:AnimalsCells
    166. Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana. PLoS One. 2008 Sep 08; 3(9):e3156. Bernatavichute YV, Zhang X, Cokus S, Pellegrini M, Jacobsen SE. PMID: 18776934; PMCID: PMC2522283.
      View in: PubMed   Mentions: 164     Fields:    Translation:AnimalsCells
    167. The SRA domain of UHRF1 flips 5-methylcytosine out of the DNA helix. Nature. 2008 Oct 09; 455(7214):826-9. Hashimoto H, Horton JR, Zhang X, Bostick M, Jacobsen SE, Cheng X. PMID: 18772888; PMCID: PMC2602803.
      View in: PubMed   Mentions: 229     Fields:    Translation:AnimalsCells
    168. Sequencing sliced ends reveals microRNA targets. Nat Biotechnol. 2008 Aug; 26(8):881-2. Henderson IR, Jacobsen SE. PMID: 18688239; PMCID: PMC2989925.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    169. Tandem repeats upstream of the Arabidopsis endogene SDC recruit non-CG DNA methylation and initiate siRNA spreading. Genes Dev. 2008 Jun 15; 22(12):1597-606. Henderson IR, Jacobsen SE. PMID: 18559476; PMCID: PMC2428058.
      View in: PubMed   Mentions: 114     Fields:    Translation:AnimalsCells
    170. The impact of Arabidopsis on human health: diversifying our portfolio. Cell. 2008 Jun 13; 133(6):939-43. Jones AM, Chory J, Dangl JL, Estelle M, Jacobsen SE, Meyerowitz EM, Nordborg M, Weigel D. PMID: 18555767; PMCID: PMC3124625.
      View in: PubMed   Mentions: 41     Fields:    Translation:HumansAnimals
    171. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature. 2008 Mar 13; 452(7184):215-9. Cokus SJ, Feng S, Zhang X, Chen Z, Merriman B, Haudenschild CD, Pradhan S, Nelson SF, Pellegrini M, Jacobsen SE. PMID: 18278030; PMCID: PMC2377394.
      View in: PubMed   Mentions: 1000     Fields:    Translation:AnimalsCells
    172. Dynamic regulation of ARGONAUTE4 within multiple nuclear bodies in Arabidopsis thaliana. PLoS Genet. 2008 Feb; 4(2):e27. Li CF, Henderson IR, Song L, Fedoroff N, Lagrange T, Jacobsen SE. PMID: 18266474; PMCID: PMC2233678.
      View in: PubMed   Mentions: 44     Fields:    Translation:AnimalsCells
    173. Promoter methylation study of the H37/RBM5 tumor suppressor gene from the 3p21.3 human lung cancer tumor suppressor locus. Hum Genet. 2008 Feb; 123(1):55-64. Oh JJ, Boctor BN, Jimenez CA, Lopez R, Koegel AK, Taschereau EO, Phan DT, Jacobsen SE, Slamon DJ. PMID: 18038152.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    174. Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components. Genes Dev. 2007 Oct 15; 21(20):2539-44. El-Shami M, Pontier D, Lahmy S, Braun L, Picart C, Vega D, Hakimi MA, Jacobsen SE, Cooke R, Lagrange T. PMID: 17938239; PMCID: PMC2000319.
      View in: PubMed   Mentions: 155     Fields:    Translation:HumansAnimalsCells
    175. The Arabidopsis LHP1 protein colocalizes with histone H3 Lys27 trimethylation. Nat Struct Mol Biol. 2007 Sep; 14(9):869-71. Zhang X, Germann S, Blus BJ, Khorasanizadeh S, Gaudin V, Jacobsen SE. PMID: 17676062.
      View in: PubMed   Mentions: 143     Fields:    Translation:AnimalsCells
    176. UHRF1 plays a role in maintaining DNA methylation in mammalian cells. Science. 2007 Sep 21; 317(5845):1760-4. Bostick M, Kim JK, Estève PO, Clark A, Pradhan S, Jacobsen SE. PMID: 17673620.
      View in: PubMed   Mentions: 652     Fields:    Translation:HumansAnimalsCells
    177. Epigenetic inheritance in plants. Nature. 2007 May 24; 447(7143):418-24. Henderson IR, Jacobsen SE. PMID: 17522675.
      View in: PubMed   Mentions: 329     Fields:    Translation:AnimalsCells
    178. Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis. PLoS Biol. 2007 May; 5(5):e129. Zhang X, Clarenz O, Cokus S, Bernatavichute YV, Pellegrini M, Goodrich J, Jacobsen SE. PMID: 17439305; PMCID: PMC1852588.
      View in: PubMed   Mentions: 336     Fields:    Translation:AnimalsCells
    179. Role of RNA polymerase IV in plant small RNA metabolism. Proc Natl Acad Sci U S A. 2007 Mar 13; 104(11):4536-41. Zhang X, Henderson IR, Lu C, Green PJ, Jacobsen SE. PMID: 17360559; PMCID: PMC1810338.
      View in: PubMed   Mentions: 130     Fields:    Translation:AnimalsCells
    180. The SRA methyl-cytosine-binding domain links DNA and histone methylation. Curr Biol. 2007 Feb 20; 17(4):379-84. Johnson LM, Bostick M, Zhang X, Kraft E, Henderson I, Callis J, Jacobsen SE. PMID: 17239600; PMCID: PMC1850948.
      View in: PubMed   Mentions: 200     Fields:    Translation:AnimalsCells
    181. Two-step recruitment of RNA-directed DNA methylation to tandem repeats. PLoS Biol. 2006 Nov; 4(11):e363. Chan SW, Zhang X, Bernatavichute YV, Jacobsen SE. PMID: 17105345; PMCID: PMC1618421.
      View in: PubMed   Mentions: 79     Fields:    Translation:AnimalsCells
    182. Acylguanidines as small-molecule beta-secretase inhibitors. J Med Chem. 2006 Oct 19; 49(21):6158-61. Cole DC, Manas ES, Stock JR, Condon JS, Jennings LD, Aulabaugh A, Chopra R, Cowling R, Ellingboe JW, Fan KY, Harrison BL, Hu Y, Jacobsen S, Jin G, Lin L, Lovering FE, Malamas MS, Stahl ML, Strand J, Sukhdeo MN, Svenson K, Turner MJ, Wagner E, Wu J, Zhou P, Bard J. PMID: 17034121.
      View in: PubMed   Mentions: 16     Fields:    Translation:Cells
    183. Plant genetics: increased outcrossing in hothead mutants. Nature. 2006 Sep 28; 443(7110):E8; discussion E8-9. Peng P, Chan SW, Shah GA, Jacobsen SE. PMID: 17006468.
      View in: PubMed   Mentions: 9     Fields:    Translation:Animals
    184. MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant. Genome Res. 2006 Oct; 16(10):1276-88. Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC. PMID: 16954541; PMCID: PMC1581437.
      View in: PubMed   Mentions: 169     Fields:    Translation:AnimalsCells
    185. Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell. 2006 Sep 22; 126(6):1189-201. Zhang X, Yazaki J, Sundaresan A, Cokus S, Chan SW, Chen H, Henderson IR, Shinn P, Pellegrini M, Jacobsen SE, Ecker JR. PMID: 16949657.
      View in: PubMed   Mentions: 793     Fields:    Translation:AnimalsCells
    186. The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center. Cell. 2006 Jul 14; 126(1):79-92. Pontes O, Li CF, Costa Nunes P, Haag J, Ream T, Vitins A, Jacobsen SE, Pikaard CS. PMID: 16839878.
      View in: PubMed   Mentions: 210     Fields:    Translation:AnimalsCells
    187. An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana. Cell. 2006 Jul 14; 126(1):93-106. Li CF, Pontes O, El-Shami M, Henderson IR, Bernatavichute YV, Chan SW, Lagrange T, Pikaard CS, Jacobsen SE. PMID: 16839879.
      View in: PubMed   Mentions: 190     Fields:    Translation:AnimalsCells
    188. RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in arabidopsis. PLoS Genet. 2006 Jun 02; 2(6):e83. Chan SW, Henderson IR, Zhang X, Shah G, Chien JS, Jacobsen SE. PMID: 16741558; PMCID: PMC1472700.
      View in: PubMed   Mentions: 114     Fields:    Translation:AnimalsCells
    189. Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nat Genet. 2006 Jun; 38(6):721-5. Henderson IR, Zhang X, Lu C, Johnson L, Meyers BC, Green PJ, Jacobsen SE. PMID: 16699516.
      View in: PubMed   Mentions: 305     Fields:    Translation:Cells
    190. Epigenetic maintenance of the vernalized state in Arabidopsis thaliana requires LIKE HETEROCHROMATIN PROTEIN 1. Nat Genet. 2006 Jun; 38(6):706-10. Sung S, He Y, Eshoo TW, Tamada Y, Johnson L, Nakahigashi K, Goto K, Jacobsen SE, Amasino RM. PMID: 16682972.
      View in: PubMed   Mentions: 110     Fields:    Translation:Animals
    191. LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC. Proc Natl Acad Sci U S A. 2006 Mar 28; 103(13):5012-7. Mylne JS, Barrett L, Tessadori F, Mesnage S, Johnson L, Bernatavichute YV, Jacobsen SE, Fransz P, Dean C. PMID: 16549797; PMCID: PMC1458786.
      View in: PubMed   Mentions: 96     Fields:    Translation:AnimalsCells
    192. Catalytic properties and kinetic mechanism of human recombinant Lys-9 histone H3 methyltransferase SUV39H1: participation of the chromodomain in enzymatic catalysis. Biochemistry. 2006 Mar 14; 45(10):3272-84. Chin HG, Patnaik D, Estève PO, Jacobsen SE, Pradhan S. PMID: 16519522.
      View in: PubMed   Mentions: 40     Fields:    Translation:HumansAnimalsCells
    193. Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2. Science. 2006 Jan 20; 311(5759):395-8. Goll MG, Kirpekar F, Maggert KA, Yoder JA, Hsieh CL, Zhang X, Golic KG, Jacobsen SE, Bestor TH. PMID: 16424344.
      View in: PubMed   Mentions: 446     Fields:    Translation:HumansAnimalsCells
    194. Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis. Genome Biol. 2005; 6(11):R90. Tran RK, Zilberman D, de Bustos C, Ditt RF, Henikoff JG, Lindroth AM, Delrow J, Boyle T, Kwong S, Bryson TD, Jacobsen SE, Henikoff S. PMID: 16277745; PMCID: PMC1297646.
      View in: PubMed   Mentions: 47     Fields:    Translation:AnimalsCells
    195. Gardening the genome: DNA methylation in Arabidopsis thaliana. Nat Rev Genet. 2005 May; 6(5):351-60. Chan SW, Henderson IR, Jacobsen SE. PMID: 15861207.
      View in: PubMed   Mentions: 366     Fields:    Translation:AnimalsCells
    196. DDM1 binds Arabidopsis methyl-CpG binding domain proteins and affects their subnuclear localization. Plant Cell. 2005 May; 17(5):1549-58. Zemach A, Li Y, Wayburn B, Ben-Meir H, Kiss V, Avivi Y, Kalchenko V, Jacobsen SE, Grafi G. PMID: 15805479; PMCID: PMC1091773.
      View in: PubMed   Mentions: 37     Fields:    Translation:AnimalsCells
    197. DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes. Curr Biol. 2005 Jan 26; 15(2):154-9. Tran RK, Henikoff JG, Zilberman D, Ditt RF, Jacobsen SE, Henikoff S. PMID: 15668172.
      View in: PubMed   Mentions: 100     Fields:    Translation:AnimalsCells
    198. Applications of DNA tiling arrays for whole-genome analysis. Genomics. 2005 Jan; 85(1):1-15. Mockler TC, Chan S, Sundaresan A, Chen H, Jacobsen SE, Ecker JR. PMID: 15607417.
      View in: PubMed   Mentions: 107     Fields:    Translation:HumansAnimalsCells
    199. Mass spectrometry analysis of Arabidopsis histone H3 reveals distinct combinations of post-translational modifications. Nucleic Acids Res. 2004; 32(22):6511-8. Johnson L, Mollah S, Garcia BA, Muratore TL, Shabanowitz J, Hunt DF, Jacobsen SE. PMID: 15598823; PMCID: PMC545460.
      View in: PubMed   Mentions: 89     Fields:    Translation:Cells
    200. Substrate specificity and kinetic mechanism of mammalian G9a histone H3 methyltransferase. J Biol Chem. 2004 Dec 17; 279(51):53248-58. Patnaik D, Chin HG, Estève PO, Benner J, Jacobsen SE, Pradhan S. PMID: 15485804.
      View in: PubMed   Mentions: 73     Fields:    Translation:AnimalsCells
    201. Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3. EMBO J. 2004 Oct 27; 23(21):4286-96. Lindroth AM, Shultis D, Jasencakova Z, Fuchs J, Johnson L, Schubert D, Patnaik D, Pradhan S, Goodrich J, Schubert I, Jenuwein T, Khorasanizadeh S, Jacobsen SE. PMID: 15457214; PMCID: PMC524394.
      View in: PubMed   Mentions: 151     Fields:    Translation:HumansAnimalsCells
    202. Small interfering RNA-induced transcriptional gene silencing in human cells. Science. 2004 Aug 27; 305(5688):1289-92. Morris KV, Chan SW, Jacobsen SE, Looney DJ. PMID: 15297624.
      View in: PubMed   Mentions: 349     Fields:    Translation:HumansCells
    203. Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats. Curr Biol. 2004 Jul 13; 14(13):1214-20. Zilberman D, Cao X, Johansen LK, Xie Z, Carrington JC, Jacobsen SE. PMID: 15242620.
      View in: PubMed   Mentions: 111     Fields:    Translation:AnimalsCells
    204. Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana. Chromosoma. 2004 Mar; 112(6):308-15. Jackson JP, Johnson L, Jasencakova Z, Zhang X, PerezBurgos L, Singh PB, Cheng X, Schubert I, Jenuwein T, Jacobsen SE. PMID: 15014946.
      View in: PubMed   Mentions: 139     Fields:    Translation:AnimalsCells
    205. RNA silencing genes control de novo DNA methylation. Science. 2004 Feb 27; 303(5662):1336. Chan SW, Zilberman D, Xie Z, Johansen LK, Carrington JC, Jacobsen SE. PMID: 14988555.
      View in: PubMed   Mentions: 226     Fields:    Translation:AnimalsCells
    206. Genetic and functional diversification of small RNA pathways in plants. PLoS Biol. 2004 May; 2(5):E104. Xie Z, Johansen LK, Gustafson AM, Kasschau KD, Lellis AD, Zilberman D, Jacobsen SE, Carrington JC. PMID: 15024409; PMCID: PMC350667.
      View in: PubMed   Mentions: 666     Fields:    Translation:AnimalsCells
    207. Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation. Curr Biol. 2003 Dec 16; 13(24):2212-7. Cao X, Aufsatz W, Zilberman D, Mette MF, Huang MS, Matzke M, Jacobsen SE. PMID: 14680640.
      View in: PubMed   Mentions: 206     Fields:    Translation:AnimalsCells
    208. One-way control of FWA imprinting in Arabidopsis endosperm by DNA methylation. Science. 2004 Jan 23; 303(5657):521-3. Kinoshita T, Miura A, Choi Y, Kinoshita Y, Cao X, Jacobsen SE, Fischer RL, Kakutani T. PMID: 14631047.
      View in: PubMed   Mentions: 218     Fields:    Translation:AnimalsCells
    209. Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis. Curr Biol. 2003 Mar 04; 13(5):421-6. Kato M, Miura A, Bender J, Jacobsen SE, Kakutani T. PMID: 12620192.
      View in: PubMed   Mentions: 129     Fields:    Translation:AnimalsCells
    210. ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science. 2003 Jan 31; 299(5607):716-9. Zilberman D, Cao X, Jacobsen SE. PMID: 12522258.
      View in: PubMed   Mentions: 440     Fields:    Translation:AnimalsCells
    211. Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes. Proc Natl Acad Sci U S A. 2002 Dec 10; 99 Suppl 4:16491-8. Cao X, Jacobsen SE. PMID: 12151602; PMCID: PMC139913.
      View in: PubMed   Mentions: 242     Fields:    Translation:HumansAnimalsCells
    212. DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in arabidopsis. Cell. 2002 Jul 12; 110(1):33-42. Choi Y, Gehring M, Johnson L, Hannon M, Harada JJ, Goldberg RB, Jacobsen SE, Fischer RL. PMID: 12150995.
      View in: PubMed   Mentions: 298     Fields:    Translation:HumansAnimalsCells
    213. Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing. Curr Biol. 2002 Jul 09; 12(13):1138-44. Cao X, Jacobsen SE. PMID: 12121623.
      View in: PubMed   Mentions: 345     Fields:    Translation:AnimalsCells
    214. Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase. Nature. 2002 Apr 04; 416(6880):556-60. Jackson JP, Lindroth AM, Cao X, Jacobsen SE. PMID: 11898023.
      View in: PubMed   Mentions: 455     Fields:    Translation:HumansAnimalsCells
    215. Ectopic hypermethylation of flower-specific genes in Arabidopsis. Curr Biol. 2000 Feb 24; 10(4):179-86. Jacobsen SE, Sakai H, Finnegan EJ, Cao X, Meyerowitz EM. PMID: 10704409.
      View in: PubMed   Mentions: 87     Fields:    Translation:AnimalsCells
    216. Disruption of an RNA helicase/RNAse III gene in Arabidopsis causes unregulated cell division in floral meristems. Development. 1999 Dec; 126(23):5231-43. Jacobsen SE, Running MP, Meyerowitz EM. PMID: 10556049.
      View in: PubMed   Mentions: 139     Fields:    Translation:AnimalsCells
    Steven's Networks
    Concepts (514)
    Derived automatically from this person's publications.
    _
    Co-Authors (32)
    People in Profiles who have published with this person.
    _
    Similar People (60)
    People who share similar concepts with this person.
    _
    Same Department
    Search Department
    _