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Enhancers associated with unstable RNAs are rare in plants. Nat Plants. 2024 Jul 30.
McDonald BR, Picard CL, Brabb IM, Savenkova MI, Schmitz RJ, Jacobsen SE, Duttke SH. PMID: 39080503.
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PubMed Mentions: Fields:
Translation:
AnimalsCells
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H1 restricts euchromatin-associated methylation pathways from heterochromatic encroachment. Elife. 2024 May 30; 12.
Harris CJ, Zhong Z, Ichino L, Feng S, Jacobsen SE. PMID: 38814684; PMCID: PMC11139477.
View in:
PubMed Mentions:
1 Fields:
Translation:
AnimalsCells
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H1 restricts euchromatin-associated methylation pathways from heterochromatic encroachment. bioRxiv. 2024 Mar 05.
Harris CJ, Zhong Z, Ichino L, Feng S, Jacobsen SE. PMID: 37214879; PMCID: PMC10197610.
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PubMed Mentions:
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MBD2 couples DNA methylation to transposable element silencing during male gametogenesis. Nat Plants. 2024 01; 10(1):13-24.
Wang S, Wang M, Ichino L, Boone BA, Zhong Z, Papareddy RK, Lin EK, Yun J, Feng S, Jacobsen SE. PMID: 38225352; PMCID: PMC10808059.
View in:
PubMed Mentions:
3 Fields:
Translation:
Cells
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Eukaryotic RNA-guided endonucleases evolved from a unique clade of bacterial enzymes. Nucleic Acids Res. 2023 Dec 11; 51(22):12414-12427.
Yoon PH, Skopintsev P, Shi H, Chen L, Adler BA, Al-Shimary M, Craig RJ, Loi KJ, DeTurk EC, Li Z, Amerasekera J, Trinidad M, Nisonoff H, Chen K, Lahiri A, Boger R, Jacobsen S, Banfield JF, Doudna JA. PMID: 37971304; PMCID: PMC10711439.
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PubMed Mentions:
3 Fields:
Translation:
Cells
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H3.1K27me1 loss confers Arabidopsis resistance to Geminivirus by sequestering DNA repair proteins onto host genome. Nat Commun. 2023 11 18; 14(1):7484.
Wang Z, Castillo-González CM, Zhao C, Tong CY, Li C, Zhong S, Liu Z, Xie K, Zhu J, Wu Z, Peng X, Jacob Y, Michaels SD, Jacobsen SE, Zhang X. PMID: 37980416; PMCID: PMC10657422.
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PubMed Mentions: Fields:
Translation:
AnimalsCells
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ACD15, ACD21, and SLN regulate the accumulation and mobility of MBD6 to silence genes and transposable elements. Sci Adv. 2023 11 17; 9(46):eadi9036.
Boone BA, Ichino L, Wang S, Gardiner J, Yun J, Jami-Alahmadi Y, Sha J, Mendoza CP, Steelman BJ, van Aardenne A, Kira-Lucas S, Trentchev I, Wohlschlegel JA, Jacobsen SE. PMID: 37967186; PMCID: PMC10651127.
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PubMed Mentions:
3 Fields:
Translation:
AnimalsCells
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Genome Mining from Agriculturally Relevant Fungi Led to a d-Glucose Esterified Polyketide with a Terpene-like Core Structure. J Am Chem Soc. 2023 11 22; 145(46):25080-25085.
Yan C, Han W, Zhou Q, Niwa K, Tang MJ, Burch JE, Zhang Y, Delgadillo DA, Sun Z, Wu Z, Jacobsen SE, Nelson H, Houk KN, Tang Y. PMID: 37948671; PMCID: PMC10682982.
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PubMed Mentions: Fields:
Translation:
Animals
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ACD15, ACD21 and SLN regulate accumulation and mobility of MBD6 to silence genes and transposable elements. bioRxiv. 2023 Oct 06.
Boone BA, Ichino L, Wang S, Gardiner J, Yun J, Jami-Alahmadi Y, Sha J, Mendoza CP, Steelman BJ, van Aardenne A, Kira-Lucas S, Trentchev I, Wohlschlegel JA, Jacobsen SE. PMID: 37662299; PMCID: PMC10473691.
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PubMed Mentions:
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Enhancers associated with unstable RNAs are rare in plants. bioRxiv. 2023 Sep 25.
Mcdonald BR, Picard C, Brabb IM, Savenkova MI, Schmitz RJ, Jacobsen SE, Duttke SH. PMID: 37808859; PMCID: PMC10557634.
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PubMed Mentions:
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A maternally programmed intergenerational mechanism enables male offspring to make piRNAs from Y-linked precursor RNAs in Drosophila. Nat Cell Biol. 2023 Oct; 25(10):1495-1505.
Venkei ZG, Gainetdinov I, Bagci A, Starostik MR, Choi CP, Fingerhut JM, Chen P, Balsara C, Whitfield TW, Bell GW, Feng S, Jacobsen SE, Aravin AA, Kim JK, Zamore PD, Yamashita YM. PMID: 37723298; PMCID: PMC10567549.
View in:
PubMed Mentions:
1 Fields:
Translation:
Animals
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Eukaryotic RNA-guided endonucleases evolved from a unique clade of bacterial enzymes. bioRxiv. 2023 Aug 10.
Yoon PH, Skopintsev P, Shi H, Chen LX, Adler BA, Al-Shimary M, Craig RJ, Li Z, Amerasekera J, Trinidad M, Nisonoff H, Chen K, Lahiri A, Boger R, Jacobsen S, Banfield JF, Doudna JA. PMID: 37609353; PMCID: PMC10441404.
View in:
PubMed Mentions:
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Assessing the Biosynthetic Inventory of the Biocontrol Fungus Trichoderma afroharzianum T22. J Agric Food Chem. 2023 Aug 02; 71(30):11502-11519.
Han W, Wu Z, Zhong Z, Williams J, Jacobsen SE, Sun Z, Tang Y. PMID: 37471583.
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PubMed Mentions:
1 Fields:
Translation:
AnimalsCells
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The MOM1 complex recruits the RdDM machinery via MORC6 to establish de novo DNA methylation. Nat Commun. 2023 07 12; 14(1):4135.
Li Z, Wang M, Zhong Z, Gallego-Bartolomé J, Feng S, Jami-Alahmadi Y, Wang X, Wohlschlegel J, Bischof S, Long JA, Jacobsen SE. PMID: 37438334; PMCID: PMC10338684.
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PubMed Mentions:
3 Fields:
Translation:
AnimalsCells
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Structural Analysis of Non-native Peptide-Based Catalysts Using 2D NMR-Guided MD Simulations. J Phys Chem A. 2023 Jul 06; 127(26):5602-5608.
Parkman JA, Barlow CD, Sheppert AP, Jacobsen S, Barksdale CA, Wayment AX, Newton MP, Burt SR, Michaelis DJ. PMID: 37347770; PMCID: PMC10722561.
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PubMed Mentions: Fields:
Translation:
Cells
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MORC proteins regulate transcription factor binding by mediating chromatin compaction in active chromatin regions. Genome Biol. 2023 04 26; 24(1):96.
Zhong Z, Xue Y, Harris CJ, Wang M, Li Z, Ke Y, Liu M, Zhou J, Jami-Alahmadi Y, Feng S, Wohlschlegel JA, Jacobsen SE. PMID: 37101218; PMCID: PMC10131428.
View in:
PubMed Mentions:
1 Fields:
Translation:
AnimalsCells
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Arabidopsis TRB proteins function in H3K4me3 demethylation by recruiting JMJ14. Nat Commun. 2023 03 28; 14(1):1736.
Wang M, Zhong Z, Gallego-Bartolomé J, Feng S, Shih YH, Liu M, Zhou J, Richey JC, Ng C, Jami-Alahmadi Y, Wohlschlegel J, Wu K, Jacobsen SE. PMID: 36977663; PMCID: PMC10049986.
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PubMed Mentions:
7 Fields:
Translation:
AnimalsCells
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Structure and mechanism of the plant RNA polymerase V. Science. 2023 03 24; 379(6638):1209-1213.
Xie G, Du X, Hu H, Li S, Cao X, Jacobsen SE, Du J. PMID: 36893216; PMCID: PMC10041816.
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PubMed Mentions:
6 Fields:
Translation:
AnimalsCells
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A gene silencing screen uncovers diverse tools for targeted gene repression in Arabidopsis. Nat Plants. 2023 03; 9(3):460-472.
Wang M, Zhong Z, Gallego-Bartolomé J, Li Z, Feng S, Kuo HY, Kan RL, Lam H, Richey JC, Tang L, Zhou J, Liu M, Jami-Alahmadi Y, Wohlschlegel J, Jacobsen SE. PMID: 36879017; PMCID: PMC10027610.
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PubMed Mentions:
5 Fields:
Translation:
Animals
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Genome editing in plants using the compact editor CasΦ. Proc Natl Acad Sci U S A. 2023 01 24; 120(4):e2216822120.
Li Z, Zhong Z, Wu Z, Pausch P, Al-Shayeb B, Amerasekera J, Doudna JA, Jacobsen SE. PMID: 36652483; PMCID: PMC9942878.
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PubMed Mentions:
8 Fields:
Translation:
Animals
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The MOM1 complex recruits the RdDM machinery via MORC6 to establish de novo DNA methylation. bioRxiv. 2023 Jan 10.
Li Z, Wang M, Zhong Z, Gallego-Bartolomé J, Feng S, Jami-Alahmadi Y, Wang X, Wohlschlegel J, Bischof S, Long JA, Jacobsen SE. PMID: 36711532; PMCID: PMC9882083.
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PubMed Mentions:
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Improving cassava bacterial blight resistance by editing the epigenome. Nat Commun. 2023 01 05; 14(1):85.
Veley KM, Elliott K, Jensen G, Zhong Z, Feng S, Yoder M, Gilbert KB, Berry JC, Lin ZD, Ghoshal B, Gallego-Bartolomé J, Norton J, Motomura-Wages S, Carrington JC, Jacobsen SE, Bart RS. PMID: 36604425; PMCID: PMC9816117.
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PubMed Mentions:
5 Fields:
Translation:
AnimalsCells
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Haplotype-resolved DNA methylome of African cassava genome. Plant Biotechnol J. 2023 02; 21(2):247-249.
Zhong Z, Feng S, Mansfeld BN, Ke Y, Qi W, Lim YW, Gruissem W, Bart RS, Jacobsen SE. PMID: 36318278; PMCID: PMC9884013.
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PubMed Mentions:
2 Fields:
Translation:
AnimalsCells
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Diverse virus-encoded CRISPR-Cas systems include streamlined genome editors. Cell. 2022 11 23; 185(24):4574-4586.e16.
Al-Shayeb B, Skopintsev P, Soczek KM, Stahl EC, Li Z, Groover E, Smock D, Eggers AR, Pausch P, Cress BF, Huang CJ, Staskawicz B, Savage DF, Jacobsen SE, Banfield JF, Doudna JA. PMID: 36423580.
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PubMed Mentions:
26 Fields:
Translation:
HumansAnimalsCells
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Single-nucleus RNA-seq reveals that MBD5, MBD6, and SILENZIO maintain silencing in the vegetative cell of developing pollen. Cell Rep. 2022 11 22; 41(8):111699.
Ichino L, Picard CL, Yun J, Chotai M, Wang S, Lin EK, Papareddy RK, Xue Y, Jacobsen SE. PMID: 36417865; PMCID: PMC9770095.
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PubMed Mentions:
7 Fields:
Translation:
AnimalsCells
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Histone chaperone ASF1 mediates H3.3-H4 deposition in Arabidopsis. Nat Commun. 2022 11 15; 13(1):6970.
Zhong Z, Wang Y, Wang M, Yang F, Thomas QA, Xue Y, Zhang Y, Liu W, Jami-Alahmadi Y, Xu L, Feng S, Marquardt S, Wohlschlegel JA, Ausin I, Jacobsen SE. PMID: 36379930; PMCID: PMC9666630.
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PubMed Mentions:
2 Fields:
Translation:
AnimalsCells
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Mutations in DNA polymerase δ subunit 1 co-segregate with CMD2-type resistance to Cassava Mosaic Geminiviruses. Nat Commun. 2022 07 07; 13(1):3933.
Lim YW, Mansfeld BN, Schläpfer P, Gilbert KB, Narayanan NN, Qi W, Wang Q, Zhong Z, Boyher A, Gehan J, Beyene G, Lin ZD, Esuma W, Feng S, Chanez C, Eggenberger N, Adiga G, Alicai T, Jacobsen SE, Taylor NJ, Gruissem W, Bart RS. PMID: 35798722; PMCID: PMC9262879.
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PubMed Mentions:
6 Fields:
Translation:
AnimalsCells
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Comprehensive identification of SWI/SNF complex subunits underpins deep eukaryotic ancestry and reveals new plant components. Commun Biol. 2022 06 06; 5(1):549.
Hernández-García J, Diego-Martin B, Kuo PH, Jami-Alahmadi Y, Vashisht AA, Wohlschlegel J, Jacobsen SE, Blázquez MA, Gallego-Bartolomé J. PMID: 35668117; PMCID: PMC9170682.
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PubMed Mentions:
14 Translation:
AnimalsCells
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A SYBR Gold-based Label-free in vitro Dicing Assay. Bio Protoc. 2022 Apr 05; 12(7):e4382.
Wang Q, Xue Y, Zhang L, Zhong Z, Feng S, Wang C, Xiao L, Yang Z, Harris JC, Wu Z, Zhai J, Yang M, Li S, Jacobsen SE, Du J. PMID: 35530519; PMCID: PMC9018436.
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PubMed Mentions:
1
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CRISPR-Cas-mediated transcriptional control and epi-mutagenesis. Plant Physiol. 2022 03 28; 188(4):1811-1824.
Gardiner J, Ghoshal B, Wang M, Jacobsen SE. PMID: 35134247; PMCID: PMC8968285.
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PubMed Mentions:
9 Fields:
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The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis. Proc Natl Acad Sci U S A. 2022 01 18; 119(3).
Potok ME, Zhong Z, Picard CL, Liu Q, Do T, Jacobsen CE, Sakr O, Naranbaatar B, Thilakaratne R, Khnkoyan Z, Purl M, Cheng H, Vervaet H, Feng S, Rayatpisheh S, Wohlschlegel JA, O'Malley RC, Ecker JR, Jacobsen SE. PMID: 35027454; PMCID: PMC8784105.
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PubMed Mentions:
7 Fields:
Translation:
AnimalsCells
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The role of MORC3 in silencing transposable elements in mouse embryonic stem cells. Epigenetics Chromatin. 2021 10 27; 14(1):49.
Desai VP, Chouaref J, Wu H, Pastor WA, Kan RL, Oey HM, Li Z, Ho J, Vonk KKD, San Leon Granado D, Christopher MA, Clark AT, Jacobsen SE, Daxinger L. PMID: 34706774; PMCID: PMC8555065.
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PubMed Mentions:
6 Fields:
Translation:
AnimalsCells
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MORC3, a novel MIWI2 association partner, as an epigenetic regulator of piRNA dependent transposon silencing in male germ cells. Sci Rep. 2021 10 14; 11(1):20472.
Kojima-Kita K, Kuramochi-Miyagawa S, Nakayama M, Miyata H, Jacobsen SE, Ikawa M, Koseki H, Nakano T. PMID: 34650118; PMCID: PMC8516955.
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PubMed Mentions:
3 Fields:
Translation:
AnimalsCells
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Mechanism of siRNA production by a plant Dicer-RNA complex in dicing-competent conformation. Science. 2021 Nov 26; 374(6571):1152-1157.
Wang Q, Xue Y, Zhang L, Zhong Z, Feng S, Wang C, Xiao L, Yang Z, Harris CJ, Wu Z, Zhai J, Yang M, Li S, Jacobsen SE, Du J. PMID: 34648373; PMCID: PMC8682726.
View in:
PubMed Mentions:
38 Fields:
Translation:
AnimalsCells
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Plant genome engineering from lab to field-a Keystone Symposia report. Ann N Y Acad Sci. 2021 12; 1506(1):35-54.
Cable J, Ronald PC, Voytas D, Zhang F, Levy AA, Takatsuka A, Arimura SI, Jacobsen SE, Toki S, Toda E, Gao C, Zhu JK, Boch J, Van Eck J, Mahfouz M, Andersson M, Fridman E, Weiss T, Wang K, Qi Y, Jores T, Adams T, Bagchi R. PMID: 34435370.
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PubMed Mentions:
2 Fields:
Translation:
Animals
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Arabidopsis MORC proteins function in the efficient establishment of RNA directed DNA methylation. Nat Commun. 2021 07 13; 12(1):4292.
Xue Y, Zhong Z, Harris CJ, Gallego-Bartolomé J, Wang M, Picard C, Cao X, Hua S, Kwok I, Feng S, Jami-Alahmadi Y, Sha J, Gardiner J, Wohlschlegel J, Jacobsen SE. PMID: 34257299; PMCID: PMC8277788.
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PubMed Mentions:
18 Fields:
Translation:
AnimalsCells
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CRISPR-based targeting of DNA methylation in Arabidopsis thaliana by a bacterial CG-specific DNA methyltransferase. Proc Natl Acad Sci U S A. 2021 06 08; 118(23).
Ghoshal B, Picard CL, Vong B, Feng S, Jacobsen SE. PMID: 34074795; PMCID: PMC8201958.
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PubMed Mentions:
25 Fields:
Translation:
AnimalsCells
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MBD5 and MBD6 couple DNA methylation to gene silencing through the J-domain protein SILENZIO. Science. 2021 Jun 03.
Ichino L, Boone BA, Strauskulage L, Harris CJ, Kaur G, Gladstone MA, Tan M, Feng S, Jami-Alahmadi Y, Duttke SH, Wohlschlegel JA, Cheng X, Redding S, Jacobsen SE. PMID: 34083448; PMCID: PMC8639832.
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PubMed Mentions:
23 Fields:
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Ectopic targeting of CG DNA methylation in Arabidopsis with the bacterial SssI methyltransferase. Nat Commun. 2021 05 25; 12(1):3130.
Liu W, Gallego-Bartolomé J, Zhou Y, Zhong Z, Wang M, Wongpalee SP, Gardiner J, Feng S, Kuo PH, Jacobsen SE. PMID: 34035251; PMCID: PMC8149686.
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PubMed Mentions:
15 Fields:
Translation:
AnimalsCells
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The histone variant H2A.W and linker histone H1 co-regulate heterochromatin accessibility and DNA methylation. Nat Commun. 2021 05 11; 12(1):2683.
Bourguet P, Picard CL, Yelagandula R, Pélissier T, Lorkovic ZJ, Feng S, Pouch-Pélissier MN, Schmücker A, Jacobsen SE, Berger F, Mathieu O. PMID: 33976212; PMCID: PMC8113232.
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PubMed Mentions:
35 Fields:
Translation:
AnimalsCells
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Whole-genome characterization of chronological age-associated changes in methylome and circular RNAs in moso bamboo (Phyllostachys edulis) from vegetative to floral growth. Plant J. 2021 04; 106(2):435-453.
Zhang Z, Wang H, Wang Y, Xi F, Wang H, Kohnen MV, Gao P, Wei W, Chen K, Liu X, Gao Y, Han X, Hu K, Zhang H, Zhu Q, Zheng Y, Liu B, Ahmad A, Hsu YH, Jacobsen SE, Gu L. PMID: 33506534.
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PubMed Mentions:
11 Fields:
Translation:
AnimalsCells
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SNPC-1.3 is a sex-specific transcription factor that drives male piRNA expression in C. elegans. Elife. 2021 02 15; 10.
Choi CP, Tay RJ, Starostik MR, Feng S, Moresco JJ, Montgomery BE, Xu E, Hammonds MA, Schatz MC, Montgomery TA, Yates JR, Jacobsen SE, Kim JK. PMID: 33587037; PMCID: PMC7884074.
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PubMed Mentions:
5 Fields:
Translation:
AnimalsCells
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DNA methylation-linked chromatin accessibility affects genomic architecture in Arabidopsis. Proc Natl Acad Sci U S A. 2021 02 02; 118(5).
Zhong Z, Feng S, Duttke SH, Potok ME, Zhang Y, Gallego-Bartolomé J, Liu W, Jacobsen SE. PMID: 33495321; PMCID: PMC7865151.
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PubMed Mentions:
37 Fields:
Translation:
AnimalsCells
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A viral guide RNA delivery system for CRISPR-based transcriptional activation and heritable targeted DNA demethylation in Arabidopsis thaliana. PLoS Genet. 2020 Dec; 16(12):e1008983.
Ghoshal B, Vong B, Picard CL, Feng S, Tam JM, Jacobsen SE. PMID: 33315895; PMCID: PMC7769603.
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PubMed Mentions:
12 Fields:
Translation:
AnimalsCells
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DNA polymerase epsilon is required for heterochromatin maintenance in Arabidopsis. Genome Biol. 2020 11 25; 21(1):283.
Bourguet P, López-González L, Gómez-Zambrano Á, Pélissier T, Hesketh A, Potok ME, Pouch-Pélissier MN, Perez M, Da Ines O, Latrasse D, White CI, Jacobsen SE, Benhamed M, Mathieu O. PMID: 33234150; PMCID: PMC7687843.
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PubMed Mentions:
10 Fields:
Translation:
AnimalsCells
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Efficient and accurate determination of genome-wide DNA methylation patterns in Arabidopsis thaliana with enzymatic methyl sequencing. Epigenetics Chromatin. 2020 10 07; 13(1):42.
Feng S, Zhong Z, Wang M, Jacobsen SE. PMID: 33028374; PMCID: PMC7542392.
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PubMed Mentions:
31 Fields:
Translation:
AnimalsCells
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CRISPR-CasΦ from huge phages is a hypercompact genome editor. Science. 2020 07 17; 369(6501):333-337.
Pausch P, Al-Shayeb B, Bisom-Rapp E, Tsuchida CA, Li Z, Cress BF, Knott GJ, Jacobsen SE, Banfield JF, Doudna JA. PMID: 32675376; PMCID: PMC8207990.
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PubMed Mentions:
196 Fields:
Translation:
Cells
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Promoter and Terminator Optimization for DNA Methylation Targeting in Arabidopsis. Epigenomes. 2020 Jun 12; 4(2).
Gardiner J, Zhao JM, Chaffin K, Jacobsen SE. PMID: 34968243; PMCID: PMC8594676.
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PubMed Mentions:
1
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NAP1-RELATED PROTEIN1 and 2 negatively regulate H2A.Z abundance in chromatin in Arabidopsis. Nat Commun. 2020 06 08; 11(1):2887.
Wang Y, Zhong Z, Zhang Y, Xu L, Feng S, Rayatpisheh S, Wohlschlegel JA, Wang Z, Jacobsen SE, Ausin I. PMID: 32513971; PMCID: PMC7280298.
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PubMed Mentions:
14 Fields:
Translation:
AnimalsCells
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The characterization of Mediator 12 and 13 as conditional positive gene regulators in Arabidopsis. Nat Commun. 2020 06 03; 11(1):2798.
Liu Q, Bischof S, Harris CJ, Zhong Z, Zhan L, Nguyen C, Rashoff A, Barshop WD, Sun F, Feng S, Potok M, Gallego-Bartolome J, Zhai J, Wohlschlegel JA, Carey MF, Long JA, Jacobsen SE. PMID: 32493925; PMCID: PMC7271234.
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PubMed Mentions:
16 Fields:
Translation:
AnimalsCells
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The plant mobile domain proteins MAIN and MAIL1 interact with the phosphatase PP7L to regulate gene expression and silence transposable elements in Arabidopsis thaliana. PLoS Genet. 2020 04; 16(4):e1008324.
Nicolau M, Picault N, Descombin J, Jami-Alahmadi Y, Feng S, Bucher E, Jacobsen SE, Deragon JM, Wohlschlegel J, Moissiard G. PMID: 32287271; PMCID: PMC7156037.
View in:
PubMed Mentions:
9 Fields:
Translation:
AnimalsCells
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A kinesin Klp10A mediates cell cycle-dependent shuttling of Piwi between nucleus and nuage. PLoS Genet. 2020 03; 16(3):e1008648.
Venkei ZG, Choi CP, Feng S, Chen C, Jacobsen SE, Kim JK, Yamashita YM. PMID: 32168327; PMCID: PMC7094869.
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PubMed Mentions:
3 Fields:
Translation:
AnimalsCells
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CryoEM structures of Arabidopsis DDR complexes involved in RNA-directed DNA methylation. Nat Commun. 2019 09 02; 10(1):3916.
Wongpalee SP, Liu S, Gallego-Bartolomé J, Leitner A, Aebersold R, Liu W, Yen L, Nohales MA, Kuo PH, Vashisht AA, Wohlschlegel JA, Feng S, Kay SA, Zhou ZH, Jacobsen SE. PMID: 31477705; PMCID: PMC6718625.
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PubMed Mentions:
17 Fields:
Translation:
AnimalsCells
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The Gene-Silencing Protein MORC-1 Topologically Entraps DNA and Forms Multimeric Assemblies to Cause DNA Compaction. Mol Cell. 2019 08 22; 75(4):700-710.e6.
Kim H, Yen L, Wongpalee SP, Kirshner JA, Mehta N, Xue Y, Johnston JB, Burlingame AL, Kim JK, Loparo JJ, Jacobsen SE. PMID: 31442422; PMCID: PMC6814019.
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PubMed Mentions:
18 Fields:
Translation:
AnimalsCells
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Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. Nat Commun. 2019 07 26; 10(1):3352.
Potok ME, Wang Y, Xu L, Zhong Z, Liu W, Feng S, Naranbaatar B, Rayatpisheh S, Wang Z, Wohlschlegel JA, Ausin I, Jacobsen SE. PMID: 31350403; PMCID: PMC6659704.
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PubMed Mentions:
31 Fields:
Translation:
AnimalsCells
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Multi-level Modulation of Light Signaling by GIGANTEA Regulates Both the Output and Pace of the Circadian Clock. Dev Cell. 2019 06 17; 49(6):840-851.e8.
Nohales MA, Liu W, Duffy T, Nozue K, Sawa M, Pruneda-Paz JL, Maloof JN, Jacobsen SE, Kay SA. PMID: 31105011; PMCID: PMC6597437.
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PubMed Mentions:
29 Fields:
Translation:
AnimalsCells
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Genome mining and biosynthesis of a polyketide from a biofertilizer fungus that can facilitate reductive iron assimilation in plant. Proc Natl Acad Sci U S A. 2019 03 19; 116(12):5499-5504.
Chen M, Liu Q, Gao SS, Young AE, Jacobsen SE, Tang Y. PMID: 30842286; PMCID: PMC6431147.
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PubMed Mentions:
20 Fields:
Translation:
AnimalsCells
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Site-specific manipulation of Arabidopsis loci using CRISPR-Cas9 SunTag systems. Nat Commun. 2019 02 13; 10(1):729.
Papikian A, Liu W, Gallego-Bartolomé J, Jacobsen SE. PMID: 30760722; PMCID: PMC6374409.
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PubMed Mentions:
106 Fields:
Translation:
AnimalsCells
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Co-targeting RNA Polymerases IV and V Promotes Efficient De Novo DNA Methylation in Arabidopsis. Cell. 2019 02 21; 176(5):1068-1082.e19.
Gallego-Bartolomé J, Liu W, Kuo PH, Feng S, Ghoshal B, Gardiner J, Zhao JM, Park SY, Chory J, Jacobsen SE. PMID: 30739798; PMCID: PMC6386582.
View in:
PubMed Mentions:
67 Fields:
Translation:
AnimalsCells
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ADCP1: a novel plant H3K9me2 reader. Cell Res. 2019 01; 29(1):6-7.
Harris CJ, Jacobsen SE. PMID: 30514899; PMCID: PMC6318331.
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PubMed Mentions:
2 Fields:
Translation:
Cells
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The TFAP2C-Regulated OCT4 Naive Enhancer Is Involved in Human Germline Formation. Cell Rep. 2018 12 26; 25(13):3591-3602.e5.
Chen D, Liu W, Zimmerman J, Pastor WA, Kim R, Hosohama L, Ho J, Aslanyan M, Gell JJ, Jacobsen SE, Clark AT. PMID: 30590035; PMCID: PMC6342560.
View in:
PubMed Mentions:
38 Fields:
Translation:
HumansCells
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A DNA methylation reader complex that enhances gene transcription. Science. 2018 12 07; 362(6419):1182-1186.
Harris CJ, Scheibe M, Wongpalee SP, Liu W, Cornett EM, Vaughan RM, Li X, Chen W, Xue Y, Zhong Z, Yen L, Barshop WD, Rayatpisheh S, Gallego-Bartolome J, Groth M, Wang Z, Wohlschlegel JA, Du J, Rothbart SB, Butter F, Jacobsen SE. PMID: 30523112; PMCID: PMC6353633.
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PubMed Mentions:
106 Fields:
Translation:
AnimalsCells
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A Nucleosome Bridging Mechanism for Activation of a Maintenance DNA Methyltransferase. Mol Cell. 2019 01 03; 73(1):73-83.e6.
Stoddard CI, Feng S, Campbell MG, Liu W, Wang H, Zhong X, Bernatavichute Y, Cheng Y, Jacobsen SE, Narlikar GJ. PMID: 30415948; PMCID: PMC6407616.
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PubMed Mentions:
21 Fields:
Translation:
AnimalsCells
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The impact and prospect of natural product discovery in agriculture: New technologies to explore the diversity of secondary metabolites in plants and microorganisms for applications in agriculture. EMBO Rep. 2018 11; 19(11).
Yan Y, Liu Q, Jacobsen SE, Tang Y. PMID: 30361392; PMCID: PMC6216283.
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PubMed Mentions:
12 Fields:
Translation:
Animals
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Mechanistic insights into plant SUVH family H3K9 methyltransferases and their binding to context-biased non-CG DNA methylation. Proc Natl Acad Sci U S A. 2018 09 11; 115(37):E8793-E8802.
Li X, Harris CJ, Zhong Z, Chen W, Liu R, Jia B, Wang Z, Li S, Jacobsen SE, Du J. PMID: 30150382; PMCID: PMC6140468.
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PubMed Mentions:
47 Fields:
Translation:
AnimalsCells
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Epigenome-wide association in adipose tissue from the METSIM cohort. Hum Mol Genet. 2018 07 15; 27(14):2586.
Orozco LD, Farrell C, Hale C, Rubbi L, Rinaldi A, Civelek M, Pan C, Lam L, Montoya D, Edillor C, Seldin M, Boehnke M, Mohlke KL, Jacobsen S, Kuusisto J, Laakso M, Lusis AJ, Pellegrini M. PMID: 29893869; PMCID: PMC6030960.
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PubMed Mentions:
9 Fields:
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Resistance-gene-directed discovery of a natural-product herbicide with a new mode of action. Nature. 2018 07; 559(7714):415-418.
Yan Y, Liu Q, Zang X, Yuan S, Bat-Erdene U, Nguyen C, Gan J, Zhou J, Jacobsen SE, Tang Y. PMID: 29995859; PMCID: PMC6097235.
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PubMed Mentions:
81 Fields:
Translation:
Animals
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Epigenome-wide association in adipose tissue from the METSIM cohort. Hum Mol Genet. 2018 05 15; 27(10):1830-1846.
Orozco LD, Farrell C, Hale C, Rubbi L, Rinaldi A, Civelek M, Pan C, Lam L, Montoya D, Edillor C, Seldin M, Boehnke M, Mohlke KL, Jacobsen S, Kuusisto J, Laakso M, Lusis AJ, Pellegrini M. PMID: 29566149; PMCID: PMC5932563.
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PubMed Mentions:
22 Fields:
Translation:
HumansCells
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TFAP2C regulates transcription in human naive pluripotency by opening enhancers. Nat Cell Biol. 2018 05; 20(5):553-564.
Pastor WA, Liu W, Chen D, Ho J, Kim R, Hunt TJ, Lukianchikov A, Liu X, Polo JM, Jacobsen SE, Clark AT. PMID: 29695788; PMCID: PMC5926822.
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PubMed Mentions:
90 Fields:
Translation:
HumansAnimalsCells
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Targeted DNA demethylation of the Arabidopsis genome using the human TET1 catalytic domain. Proc Natl Acad Sci U S A. 2018 02 27; 115(9):E2125-E2134.
Gallego-Bartolomé J, Gardiner J, Liu W, Papikian A, Ghoshal B, Kuo HY, Zhao JM, Segal DJ, Jacobsen SE. PMID: 29444862; PMCID: PMC5834696.
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PubMed Mentions:
95 Fields:
Translation:
HumansAnimalsCells
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RNA-directed DNA methylation involves co-transcriptional small-RNA-guided slicing of polymerase V transcripts in Arabidopsis. Nat Plants. 2018 03; 4(3):181-188.
Liu W, Duttke SH, Hetzel J, Groth M, Feng S, Gallego-Bartolome J, Zhong Z, Kuo HY, Wang Z, Zhai J, Chory J, Jacobsen SE. PMID: 29379150; PMCID: PMC5832601.
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PubMed Mentions:
60 Fields:
Translation:
AnimalsCells
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Large-scale comparative epigenomics reveals hierarchical regulation of non-CG methylation in Arabidopsis. Proc Natl Acad Sci U S A. 2018 01 30; 115(5):E1069-E1074.
Zhang Y, Harris CJ, Liu Q, Liu W, Ausin I, Long Y, Xiao L, Feng L, Chen X, Xie Y, Chen X, Zhan L, Feng S, Li JJ, Wang H, Zhai J, Jacobsen SE. PMID: 29339507; PMCID: PMC5798360.
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PubMed Mentions:
32 Fields:
Translation:
AnimalsCells
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Correction: In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse. Elife. 2017 08 31; 6.
Morselli M, Pastor WA, Montanini B, Nee K, Ferrari R, Fu K, Bonora G, Rubbi L, Clark AT, Ottonello S, Jacobsen SE, Pellegrini M. PMID: 28858608; PMCID: PMC5578735.
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PubMed Mentions: Fields:
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MORC-1 Integrates Nuclear RNAi and Transgenerational Chromatin Architecture to Promote Germline Immortality. Dev Cell. 2017 05 22; 41(4):408-423.e7.
Weiser NE, Yang DX, Feng S, Kalinava N, Brown KC, Khanikar J, Freeberg MA, Snyder MJ, Csankovszki G, Chan RC, Gu SG, Montgomery TA, Jacobsen SE, Kim JK. PMID: 28535375; PMCID: PMC5527976.
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PubMed Mentions:
32 Fields:
Translation:
AnimalsCells
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The histone H3 variant H3.3 regulates gene body DNA methylation in Arabidopsis thaliana. Genome Biol. 2017 05 18; 18(1):94.
Wollmann H, Stroud H, Yelagandula R, Tarutani Y, Jiang D, Jing L, Jamge B, Takeuchi H, Holec S, Nie X, Kakutani T, Jacobsen SE, Berger F. PMID: 28521766; PMCID: PMC5437678.
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PubMed Mentions:
59 Fields:
Translation:
AnimalsCells
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Corrigendum: SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation. Nature. 2017 03 02; 543(7643):136.
Johnson LM, Du J, Hale CJ, Bischof S, Feng S, Chodavarapu RK, Zhong X, Marson G, Pellegrini M, Segal DJ, Patel DJ, Jacobsen SE. PMID: 28178234.
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PubMed Mentions: Fields:
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Germline competency of human embryonic stem cells depends on eomesodermin. Biol Reprod. 2017 01 01; 97(6):850-861.
Chen D, Liu W, Lukianchikov A, Hancock GV, Zimmerman J, Lowe MG, Kim R, Galic Z, Irie N, Surani MA, Jacobsen SE, Clark AT. PMID: 29091993; PMCID: PMC5803789.
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PubMed Mentions:
50 Fields:
Translation:
HumansCells
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Large-scale heterochromatin remodeling linked to overreplication-associated DNA damage. Proc Natl Acad Sci U S A. 2017 01 10; 114(2):406-411.
Feng W, Hale CJ, Over RS, Cokus SJ, Jacobsen SE, Michaels SD. PMID: 28028228; PMCID: PMC5240675.
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PubMed Mentions:
23 Fields:
Translation:
AnimalsCells
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Evidence for ARGONAUTE4-DNA interactions in RNA-directed DNA methylation in plants. Genes Dev. 2016 12 01; 30(23):2565-2570.
Lahmy S, Pontier D, Bies-Etheve N, Laudié M, Feng S, Jobet E, Hale CJ, Cooke R, Hakimi MA, Angelov D, Jacobsen SE, Lagrange T. PMID: 27986858; PMCID: PMC5204349.
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PubMed Mentions:
37 Fields:
Translation:
Cells
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DNA methylome of the 20-gigabase Norway spruce genome. Proc Natl Acad Sci U S A. 2016 12 13; 113(50):E8106-E8113.
Ausin I, Feng S, Yu C, Liu W, Kuo HY, Jacobsen EL, Zhai J, Gallego-Bartolome J, Wang L, Egertsdotter U, Street NR, Jacobsen SE, Wang H. PMID: 27911846; PMCID: PMC5167160.
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PubMed Mentions:
47 Fields:
Translation:
AnimalsCells
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Mouse MORC3 is a GHKL ATPase that localizes to H3K4me3 marked chromatin. Proc Natl Acad Sci U S A. 2016 08 30; 113(35):E5108-16.
Li S, Yen L, Pastor WA, Johnston JB, Du J, Shew CJ, Liu W, Ho J, Stender B, Clark AT, Burlingame AL, Daxinger L, Patel DJ, Jacobsen SE. PMID: 27528681; PMCID: PMC5024608.
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PubMed Mentions:
26 Fields:
Translation:
AnimalsCells
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On the origin and evolutionary consequences of gene body DNA methylation. Proc Natl Acad Sci U S A. 2016 08 09; 113(32):9111-6.
Bewick AJ, Ji L, Niederhuth CE, Willing EM, Hofmeister BT, Shi X, Wang L, Lu Z, Rohr NA, Hartwig B, Kiefer C, Deal RB, Schmutz J, Grimwood J, Stroud H, Jacobsen SE, Schneeberger K, Zhang X, Schmitz RJ. PMID: 27457936; PMCID: PMC4987809.
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PubMed Mentions:
135 Fields:
Translation:
AnimalsCells
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MTHFD1 controls DNA methylation in Arabidopsis. Nat Commun. 2016 06 13; 7:11640.
Groth M, Moissiard G, Wirtz M, Wang H, Garcia-Salinas C, Ramos-Parra PA, Bischof S, Feng S, Cokus SJ, John A, Smith DC, Zhai J, Hale CJ, Long JA, Hell R, Díaz de la Garza RI, Jacobsen SE. PMID: 27291711; PMCID: PMC4909953.
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PubMed Mentions:
27 Fields:
Translation:
AnimalsCells
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Identification of Multiple Proteins Coupling Transcriptional Gene Silencing to Genome Stability in Arabidopsis thaliana. PLoS Genet. 2016 06; 12(6):e1006092.
Hale CJ, Potok ME, Lopez J, Do T, Liu A, Gallego-Bartolome J, Michaels SD, Jacobsen SE. PMID: 27253878; PMCID: PMC4890748.
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PubMed Mentions:
19 Fields:
Translation:
AnimalsCells
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Arabidopsis AtMORC4 and AtMORC7 Form Nuclear Bodies and Repress a Large Number of Protein-Coding Genes. PLoS Genet. 2016 05; 12(5):e1005998.
Harris CJ, Husmann D, Liu W, Kasmi FE, Wang H, Papikian A, Pastor WA, Moissiard G, Vashisht AA, Dangl JL, Wohlschlegel JA, Jacobsen SE. PMID: 27171361; PMCID: PMC4865129.
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PubMed Mentions:
27 Fields:
Translation:
AnimalsCells
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Structural Basis for the Unique Multivalent Readout of Unmodified H3 Tail by Arabidopsis ORC1b BAH-PHD Cassette. Structure. 2016 Mar 01; 24(3):486-94.
Li S, Yang Z, Du X, Liu R, Wilkinson AW, Gozani O, Jacobsen SE, Patel DJ, Du J. PMID: 26876097; PMCID: PMC4775424.
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PubMed Mentions:
13 Fields:
Translation:
AnimalsCells
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Naive Human Pluripotent Cells Feature a Methylation Landscape Devoid of Blastocyst or Germline Memory. Cell Stem Cell. 2016 Mar 03; 18(3):323-329.
Pastor WA, Chen D, Liu W, Kim R, Sahakyan A, Lukianchikov A, Plath K, Jacobsen SE, Clark AT. PMID: 26853856; PMCID: PMC4779431.
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PubMed Mentions:
145 Fields:
Translation:
HumansAnimalsCells
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CG gene body DNA methylation changes and evolution of duplicated genes in cassava. Proc Natl Acad Sci U S A. 2015 Nov 03; 112(44):13729-34.
Wang H, Beyene G, Zhai J, Feng S, Fahlgren N, Taylor NJ, Bart R, Carrington JC, Jacobsen SE, Ausin I. PMID: 26483493; PMCID: PMC4640745.
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PubMed Mentions:
74 Fields:
Translation:
AnimalsCells
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A One Precursor One siRNA Model for Pol IV-Dependent siRNA Biogenesis. Cell. 2015 Oct 08; 163(2):445-55.
Zhai J, Bischof S, Wang H, Feng S, Lee TF, Teng C, Chen X, Park SY, Liu L, Gallego-Bartolome J, Liu W, Henderson IR, Meyers BC, Ausin I, Jacobsen SE. PMID: 26451488; PMCID: PMC5023148.
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PubMed Mentions:
124 Fields:
Translation:
AnimalsCells
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DNA methylation pathways and their crosstalk with histone methylation. Nat Rev Mol Cell Biol. 2015 Sep; 16(9):519-32.
Du J, Johnson LM, Jacobsen SE, Patel DJ. PMID: 26296162; PMCID: PMC4672940.
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PubMed Mentions:
413 Fields:
Translation:
HumansAnimalsCells
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Increasing Nucleosome Occupancy Is Correlated with an Increasing Mutation Rate so Long as DNA Repair Machinery Is Intact. PLoS One. 2015; 10(8):e0136574.
Yazdi PG, Pedersen BA, Taylor JF, Khattab OS, Chen YH, Chen Y, Jacobsen SE, Wang PH. PMID: 26308346; PMCID: PMC4550472.
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PubMed Mentions:
15 Fields:
Translation:
HumansCells
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Nucleosome Organization in Human Embryonic Stem Cells. PLoS One. 2015; 10(8):e0136314.
Yazdi PG, Pedersen BA, Taylor JF, Khattab OS, Chen YH, Chen Y, Jacobsen SE, Wang PH. PMID: 26305225; PMCID: PMC4549264.
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PubMed Mentions:
13 Fields:
Translation:
HumansCells
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Erratum: MORC1 represses transposable elements in the mouse male germline. Nat Commun. 2015 Jul 10; 6:7604.
Pastor WA, Stroud H, Nee K, Liu W, Pezic D, Manakov S, Lee SA, Moissiard G, Zamudio N, Bourc'his D, Aravin AA, Clark AT, Jacobsen SE. PMID: 26159654; PMCID: PMC5784397.
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PubMed Mentions:
3 Fields:
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C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Cell Discov. 2015; 1.
Zhang S, Zhou B, Kang Y, Cui X, Liu A, Deleris A, Greenberg MV, Cui X, Qiu Q, Lu F, Wohlschlegel JA, Jacobsen SE, Cao X. PMID: 26617990; PMCID: PMC4659397.
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PubMed Mentions:
27
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In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse. Elife. 2015 Apr 07; 4:e06205.
Morselli M, Pastor WA, Montanini B, Nee K, Ferrari R, Fu K, Bonora G, Rubbi L, Clark AT, Ottonello S, Jacobsen SE, Pellegrini M. PMID: 25848745; PMCID: PMC4412109.
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PubMed Mentions:
86 Fields:
Translation:
AnimalsCells
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Domains rearranged methyltransferase3 controls DNA methylation and regulates RNA polymerase V transcript abundance in Arabidopsis. Proc Natl Acad Sci U S A. 2015 Jan 20; 112(3):911-6.
Zhong X, Hale CJ, Nguyen M, Ausin I, Groth M, Hetzel J, Vashisht AA, Henderson IR, Wohlschlegel JA, Jacobsen SE. PMID: 25561521; PMCID: PMC4311829.
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PubMed Mentions:
22 Fields:
Translation:
AnimalsCells
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Rare allele of a previously unidentified histone H4 acetyltransferase enhances grain weight, yield, and plant biomass in rice. Proc Natl Acad Sci U S A. 2015 Jan 06; 112(1):76-81.
Song XJ, Kuroha T, Ayano M, Furuta T, Nagai K, Komeda N, Segami S, Miura K, Ogawa D, Kamura T, Suzuki T, Higashiyama T, Yamasaki M, Mori H, Inukai Y, Wu J, Kitano H, Sakakibara H, Jacobsen SE, Ashikari M. PMID: 25535376; PMCID: PMC4291654.
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PubMed Mentions:
120 Fields:
Translation:
HumansAnimalsCells
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MORC1 represses transposable elements in the mouse male germline. Nat Commun. 2014 Dec 12; 5:5795.
Pastor WA, Stroud H, Nee K, Liu W, Pezic D, Manakov S, Lee SA, Moissiard G, Zamudio N, Bourc'his D, Aravin AA, Clark AT, Jacobsen SE. PMID: 25503965; PMCID: PMC4268658.
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PubMed Mentions:
65 Fields:
Translation:
AnimalsCells
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SNF2 chromatin remodeler-family proteins FRG1 and -2 are required for RNA-directed DNA methylation. Proc Natl Acad Sci U S A. 2014 Dec 09; 111(49):17666-71.
Groth M, Stroud H, Feng S, Greenberg MV, Vashisht AA, Wohlschlegel JA, Jacobsen SE, Ausin I. PMID: 25425661; PMCID: PMC4267348.
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PubMed Mentions:
18 Fields:
Translation:
AnimalsCells
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Genome-wide Hi-C analyses in wild-type and mutants reveal high-resolution chromatin interactions in Arabidopsis. Mol Cell. 2014 Sep 04; 55(5):694-707.
Feng S, Cokus SJ, Schubert V, Zhai J, Pellegrini M, Jacobsen SE. PMID: 25132175; PMCID: PMC4347903.
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PubMed Mentions:
143 Fields:
Translation:
AnimalsCells
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Dissecting the dynamic changes of 5-hydroxymethylcytosine in T-cell development and differentiation. Proc Natl Acad Sci U S A. 2014 Aug 12; 111(32):E3306-15.
Tsagaratou A, Äijö T, Lio CW, Yue X, Huang Y, Jacobsen SE, Lähdesmäki H, Rao A. PMID: 25071199; PMCID: PMC4136618.
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PubMed Mentions:
95 Fields:
Translation:
AnimalsCells
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Mechanism of DNA methylation-directed histone methylation by KRYPTONITE. Mol Cell. 2014 Aug 07; 55(3):495-504.
Du J, Johnson LM, Groth M, Feng S, Hale CJ, Li S, Vashisht AA, Wohlschlegel JA, Patel DJ, Jacobsen SE. PMID: 25018018; PMCID: PMC4127122.
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PubMed Mentions:
101 Fields:
Translation:
AnimalsCells
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The histone variant H2A.W defines heterochromatin and promotes chromatin condensation in Arabidopsis. Cell. 2014 Jul 03; 158(1):98-109.
Yelagandula R, Stroud H, Holec S, Zhou K, Feng S, Zhong X, Muthurajan UM, Nie X, Kawashima T, Groth M, Luger K, Jacobsen SE, Berger F. PMID: 24995981; PMCID: PMC4671829.
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PubMed Mentions:
129 Fields:
Translation:
AnimalsCells
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The Functional Topography of the Arabidopsis Genome Is Organized in a Reduced Number of Linear Motifs of Chromatin States. Plant Cell. 2014 Jun; 26(6):2351-2366.
Sequeira-Mendes J, Aragüez I, Peiró R, Mendez-Giraldez R, Zhang X, Jacobsen SE, Bastolla U, Gutierrez C. PMID: 24934173; PMCID: PMC4114938.
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PubMed Mentions:
140 Fields:
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Molecular mechanism of action of plant DRM de novo DNA methyltransferases. Cell. 2014 May 22; 157(5):1050-60.
Zhong X, Du J, Hale CJ, Gallego-Bartolome J, Feng S, Vashisht AA, Chory J, Wohlschlegel JA, Patel DJ, Jacobsen SE. PMID: 24855943; PMCID: PMC4123750.
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PubMed Mentions:
139 Fields:
Translation:
AnimalsCells
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Transcriptional gene silencing by Arabidopsis microrchidia homologues involves the formation of heteromers. Proc Natl Acad Sci U S A. 2014 May 20; 111(20):7474-9.
Moissiard G, Bischof S, Husmann D, Pastor WA, Hale CJ, Yen L, Stroud H, Papikian A, Vashisht AA, Wohlschlegel JA, Jacobsen SE. PMID: 24799676; PMCID: PMC4034193.
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PubMed Mentions:
37 Fields:
Translation:
AnimalsCells
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SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation. Nature. 2014 03 06; 507(7490):124-128.
Johnson LM, Du J, Hale CJ, Bischof S, Feng S, Chodavarapu RK, Zhong X, Marson G, Pellegrini M, Segal DJ, Patel DJ, Jacobsen SE. PMID: 24463519; PMCID: PMC3963826.
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PubMed Mentions:
156 Fields:
Translation:
AnimalsCells
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Distinct roles of the methylcytosine oxidases Tet1 and Tet2 in mouse embryonic stem cells. Proc Natl Acad Sci U S A. 2014 Jan 28; 111(4):1361-6.
Huang Y, Chavez L, Chang X, Wang X, Pastor WA, Kang J, Zepeda-Martínez JA, Pape UJ, Jacobsen SE, Peters B, Rao A. PMID: 24474761; PMCID: PMC3910590.
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PubMed Mentions:
148 Fields:
Translation:
AnimalsCells
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Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis. Nat Struct Mol Biol. 2014 Jan; 21(1):64-72.
Stroud H, Do T, Du J, Zhong X, Feng S, Johnson L, Patel DJ, Jacobsen SE. PMID: 24336224; PMCID: PMC4103798.
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PubMed Mentions:
416 Fields:
Translation:
AnimalsCells
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Interplay between active chromatin marks and RNA-directed DNA methylation in Arabidopsis thaliana. PLoS Genet. 2013 Nov; 9(11):e1003946.
Greenberg MV, Deleris A, Hale CJ, Liu A, Feng S, Jacobsen SE. PMID: 24244201; PMCID: PMC3820799.
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PubMed Mentions:
40 Fields:
Translation:
AnimalsCells
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Epigenetic differences between shoots and roots in Arabidopsis reveals tissue-specific regulation. Epigenetics. 2014 Feb; 9(2):236-42.
Widman N, Feng S, Jacobsen SE, Pellegrini M. PMID: 24169618; PMCID: PMC3962533.
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PubMed Mentions:
26 Fields:
Translation:
AnimalsCells
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RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee. Proc Natl Acad Sci U S A. 2013 Jul 30; 110(31):12750-5.
Li-Byarlay H, Li Y, Stroud H, Feng S, Newman TC, Kaneda M, Hou KK, Worley KC, Elsik CG, Wickline SA, Jacobsen SE, Ma J, Robinson GE. PMID: 23852726; PMCID: PMC3732956.
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PubMed Mentions:
113 Fields:
Translation:
AnimalsCells
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Intrauterine calorie restriction affects placental DNA methylation and gene expression. Physiol Genomics. 2013 Jul 15; 45(14):565-76.
Chen PY, Ganguly A, Rubbi L, Orozco LD, Morselli M, Ashraf D, Jaroszewicz A, Feng S, Jacobsen SE, Nakano A, Devaskar SU, Pellegrini M. PMID: 23695884; PMCID: PMC3727019.
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PubMed Mentions:
50 Fields:
Translation:
AnimalsCells
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Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1. Nature. 2013 Jun 20; 498(7454):385-9.
Law JA, Du J, Hale CJ, Feng S, Krajewski K, Palanca AM, Strahl BD, Patel DJ, Jacobsen SE. PMID: 23636332; PMCID: PMC4119789.
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PubMed Mentions:
181 Fields:
Translation:
AnimalsCells
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Plants regenerated from tissue culture contain stable epigenome changes in rice. Elife. 2013 Mar 19; 2:e00354.
Stroud H, Ding B, Simon SA, Feng S, Bellizzi M, Pellegrini M, Wang GL, Meyers BC, Jacobsen SE. PMID: 23539454; PMCID: PMC3601819.
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PubMed Mentions:
111 Fields:
Translation:
AnimalsCells
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Stage-specific roles for tet1 and tet2 in DNA demethylation in primordial germ cells. Cell Stem Cell. 2013 Apr 04; 12(4):470-8.
Vincent JJ, Huang Y, Chen PY, Feng S, Calvopiña JH, Nee K, Lee SA, Le T, Yoon AJ, Faull K, Fan G, Rao A, Jacobsen SE, Pellegrini M, Clark AT. PMID: 23415914; PMCID: PMC3684274.
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PubMed Mentions:
86 Fields:
Translation:
AnimalsCells
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A matrix protein silences transposons and repeats through interaction with retinoblastoma-associated proteins. Curr Biol. 2013 Feb 18; 23(4):345-50.
Xu Y, Wang Y, Stroud H, Gu X, Sun B, Gan ES, Ng KH, Jacobsen SE, He Y, Ito T. PMID: 23394836.
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PubMed Mentions:
23 Fields:
Translation:
AnimalsCells
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Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome. Cell. 2013 Jan 17; 152(1-2):352-64.
Stroud H, Greenberg MV, Feng S, Bernatavichute YV, Jacobsen SE. PMID: 23313553; PMCID: PMC3597350.
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PubMed Mentions:
446 Fields:
Translation:
AnimalsCells
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Loss of the DNA methyltransferase MET1 Induces H3K9 hypermethylation at PcG target genes and redistribution of H3K27 trimethylation to transposons in Arabidopsis thaliana. PLoS Genet. 2012; 8(11):e1003062.
Deleris A, Stroud H, Bernatavichute Y, Johnson E, Klein G, Schubert D, Jacobsen SE. PMID: 23209430; PMCID: PMC3510029.
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PubMed Mentions:
91 Fields:
Translation:
AnimalsCells
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The SET-domain protein SUVR5 mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation-independent manner. PLoS Genet. 2012; 8(10):e1002995.
Caro E, Stroud H, Greenberg MV, Bernatavichute YV, Feng S, Groth M, Vashisht AA, Wohlschlegel J, Jacobsen SE. PMID: 23071452; PMCID: PMC3469426.
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PubMed Mentions:
20 Fields:
Translation:
AnimalsCells
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Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants. Cell. 2012 Sep 28; 151(1):167-80.
Du J, Zhong X, Bernatavichute YV, Stroud H, Feng S, Caro E, Vashisht AA, Terragni J, Chin HG, Tu A, Hetzel J, Wohlschlegel JA, Pradhan S, Patel DJ, Jacobsen SE. PMID: 23021223; PMCID: PMC3471781.
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PubMed Mentions:
254 Fields:
Translation:
AnimalsCells
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Features of the Arabidopsis recombination landscape resulting from the combined loss of sequence variation and DNA methylation. Proc Natl Acad Sci U S A. 2012 Oct 02; 109(40):16240-5.
Colomé-Tatché M, Cortijo S, Wardenaar R, Morgado L, Lahouze B, Sarazin A, Etcheverry M, Martin A, Feng S, Duvernois-Berthet E, Labadie K, Wincker P, Jacobsen SE, Jansen RC, Colot V, Johannes F. PMID: 22988127; PMCID: PMC3479620.
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PubMed Mentions:
74 Fields:
Translation:
AnimalsCells
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DDR complex facilitates global association of RNA polymerase V to promoters and evolutionarily young transposons. Nat Struct Mol Biol. 2012 Sep; 19(9):870-5.
Zhong X, Hale CJ, Law JA, Johnson LM, Feng S, Tu A, Jacobsen SE. PMID: 22864289; PMCID: PMC3443314.
View in:
PubMed Mentions:
110 Fields:
Translation:
AnimalsCells
-
Transcriptome and methylome interactions in rice hybrids. Proc Natl Acad Sci U S A. 2012 Jul 24; 109(30):12040-5.
Chodavarapu RK, Feng S, Ding B, Simon SA, Lopez D, Jia Y, Wang GL, Meyers BC, Jacobsen SE, Pellegrini M. PMID: 22778444; PMCID: PMC3409791.
View in:
PubMed Mentions:
99 Fields:
Translation:
AnimalsCells
-
DNA methyltransferases are required to induce heterochromatic re-replication in Arabidopsis. PLoS Genet. 2012 Jul; 8(7):e1002808.
Stroud H, Hale CJ, Feng S, Caro E, Jacob Y, Michaels SD, Jacobsen SE. PMID: 22792077; PMCID: PMC3390372.
View in:
PubMed Mentions:
47 Fields:
Translation:
AnimalsCells
-
A unified phylogeny-based nomenclature for histone variants. Epigenetics Chromatin. 2012 Jun 21; 5:7.
Talbert PB, Ahmad K, Almouzni G, Ausió J, Berger F, Bhalla PL, Bonner WM, Cande WZ, Chadwick BP, Chan SW, Cross GA, Cui L, Dimitrov SI, Doenecke D, Eirin-López JM, Gorovsky MA, Hake SB, Hamkalo BA, Holec S, Jacobsen SE, Kamieniarz K, Khochbin S, Ladurner AG, Landsman D, Latham JA, Loppin B, Malik HS, Marzluff WF, Pehrson JR, Postberg J, Schneider R, Singh MB, Smith MM, Thompson E, Torres-Padilla ME, Tremethick DJ, Turner BM, Waterborg JH, Wollmann H, Yelagandula R, Zhu B, Henikoff S. PMID: 22650316; PMCID: PMC3380720.
View in:
PubMed Mentions:
145 Fields:
-
INVOLVED IN DE NOVO 2-containing complex involved in RNA-directed DNA methylation in Arabidopsis. Proc Natl Acad Sci U S A. 2012 May 29; 109(22):8374-81.
Ausin I, Greenberg MV, Simanshu DK, Hale CJ, Vashisht AA, Simon SA, Lee TF, Feng S, Española SD, Meyers BC, Wohlschlegel JA, Patel DJ, Jacobsen SE. PMID: 22592791; PMCID: PMC3365198.
View in:
PubMed Mentions:
52 Fields:
Translation:
AnimalsCells
-
MORC family ATPases required for heterochromatin condensation and gene silencing. Science. 2012 Jun 15; 336(6087):1448-51.
Moissiard G, Cokus SJ, Cary J, Feng S, Billi AC, Stroud H, Husmann D, Zhan Y, Lajoie BR, McCord RP, Hale CJ, Feng W, Michaels SD, Frand AR, Pellegrini M, Dekker J, Kim JK, Jacobsen SE. PMID: 22555433; PMCID: PMC3376212.
View in:
PubMed Mentions:
166 Fields:
Translation:
AnimalsCells
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Opening the door to epigenetics in PCP. Plant Cell Physiol. 2012 May; 53(5):763-5.
Kinoshita T, Jacobsen SE. PMID: 22566217; PMCID: PMC3530370.
View in:
PubMed Mentions:
5 Fields:
Translation:
Cells
-
Histone methyltransferases regulating rRNA gene dose and dosage control in Arabidopsis. Genes Dev. 2012 May 01; 26(9):945-57.
Pontvianne F, Blevins T, Chandrasekhara C, Feng W, Stroud H, Jacobsen SE, Michaels SD, Pikaard CS. PMID: 22549957; PMCID: PMC3347792.
View in:
PubMed Mentions:
50 Fields:
Translation:
AnimalsCells
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Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana. Proc Natl Acad Sci U S A. 2012 Apr 03; 109(14):5370-5.
Stroud H, Otero S, Desvoyes B, Ramírez-Parra E, Jacobsen SE, Gutierrez C. PMID: 22431625; PMCID: PMC3325649.
View in:
PubMed Mentions:
117 Fields:
Translation:
AnimalsCells
-
DNA methylation dynamics, metabolic fluxes, gene splicing, and alternative phenotypes in honey bees. Proc Natl Acad Sci U S A. 2012 Mar 27; 109(13):4968-73.
Foret S, Kucharski R, Pellegrini M, Feng S, Jacobsen SE, Robinson GE, Maleszka R. PMID: 22416128; PMCID: PMC3324026.
View in:
PubMed Mentions:
134 Fields:
Translation:
AnimalsCells
-
Plant biology: Equal-parenting policy. Nature. 2012 Jan 22; 482(7383):42-4.
Hale CJ, Jacobsen SE. PMID: 22266937.
View in:
PubMed Mentions:
1 Fields:
Translation:
AnimalsCells
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The splicing factor SR45 affects the RNA-directed DNA methylation pathway in Arabidopsis. Epigenetics. 2012 Jan 01; 7(1):29-33.
Ausin I, Greenberg MV, Li CF, Jacobsen SE. PMID: 22274613; PMCID: PMC3329499.
View in:
PubMed Mentions:
30 Fields:
Translation:
AnimalsCells
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Association of plasma renin activity and aldosterone-renin ratio with prevalence of chronic kidney disease: the Kaiser Permanente Southern California cohort. J Hypertens. 2011 Nov; 29(11):2226-35.
Sim JJ, Shi J, Calara F, Rasgon S, Jacobsen S, Kalantar-Zadeh K. PMID: 21941205.
View in:
PubMed Mentions:
14 Fields:
Translation:
Humans
-
SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV. PLoS Genet. 2011 Jul; 7(7):e1002195.
Law JA, Vashisht AA, Wohlschlegel JA, Jacobsen SE. PMID: 21811420; PMCID: PMC3141008.
View in:
PubMed Mentions:
108 Fields:
Translation:
AnimalsCells
-
A comparative analysis of DNA methylation across human embryonic stem cell lines. Genome Biol. 2011 Jul 06; 12(7):R62.
Chen PY, Feng S, Joo JW, Jacobsen SE, Pellegrini M. PMID: 21733148; PMCID: PMC3218824.
View in:
PubMed Mentions:
51 Fields:
Translation:
HumansCells
-
5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells. Genome Biol. 2011 Jun 20; 12(6):R54.
Stroud H, Feng S, Morey Kinney S, Pradhan S, Jacobsen SE. PMID: 21689397; PMCID: PMC3218842.
View in:
PubMed Mentions:
253 Fields:
Translation:
HumansCells
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Tissue-specific distribution and dynamic changes of 5-hydroxymethylcytosine in mammalian genomes. J Biol Chem. 2011 Jul 15; 286(28):24685-93.
Kinney SM, Chin HG, Vaisvila R, Bitinaite J, Zheng Y, Estève PO, Feng S, Stroud H, Jacobsen SE, Pradhan S. PMID: 21610077; PMCID: PMC3137044.
View in:
PubMed Mentions:
67 Fields:
Translation:
HumansAnimalsCells
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Identification of genes required for de novo DNA methylation in Arabidopsis. Epigenetics. 2011 Mar; 6(3):344-54.
Greenberg MV, Ausin I, Chan SW, Cokus SJ, Cuperus JT, Feng S, Law JA, Chu C, Pellegrini M, Carrington JC, Jacobsen SE. PMID: 21150311; PMCID: PMC3092683.
View in:
PubMed Mentions:
44 Fields:
Translation:
AnimalsCells
-
Genome-wide mapping of Arabidopsis thaliana origins of DNA replication and their associated epigenetic marks. Nat Struct Mol Biol. 2011 Mar; 18(3):395-400.
Costas C, de la Paz Sanchez M, Stroud H, Yu Y, Oliveros JC, Feng S, Benguria A, López-Vidriero I, Zhang X, Solano R, Jacobsen SE, Gutierrez C. PMID: 21297636; PMCID: PMC3079358.
View in:
PubMed Mentions:
63 Fields:
Translation:
AnimalsCells
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A dual flip-out mechanism for 5mC recognition by the Arabidopsis SUVH5 SRA domain and its impact on DNA methylation and H3K9 dimethylation in vivo. Genes Dev. 2011 Jan 15; 25(2):137-52.
Rajakumara E, Law JA, Simanshu DK, Voigt P, Johnson LM, Reinberg D, Patel DJ, Jacobsen SE. PMID: 21245167; PMCID: PMC3022260.
View in:
PubMed Mentions:
62 Fields:
Translation:
AnimalsCells
-
6-Thioguanine reactivates epigenetically silenced genes in acute lymphoblastic leukemia cells by facilitating proteasome-mediated degradation of DNMT1. Cancer Res. 2011 Mar 01; 71(5):1904-11.
Yuan B, Zhang J, Wang H, Xiong L, Cai Q, Wang T, Jacobsen S, Pradhan S, Wang Y. PMID: 21239472; PMCID: PMC3049985.
View in:
PubMed Mentions:
23 Fields:
Translation:
HumansCells
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Epigenetic modifications in plants: an evolutionary perspective. Curr Opin Plant Biol. 2011 Apr; 14(2):179-86.
Feng S, Jacobsen SE. PMID: 21233005; PMCID: PMC3097131.
View in:
PubMed Mentions:
94 Fields:
Translation:
AnimalsCells
-
Determining DNA methylation profiles using sequencing. Methods Mol Biol. 2011; 733:223-38.
Feng S, Rubbi L, Jacobsen SE, Pellegrini M. PMID: 21431774.
View in:
PubMed Mentions:
28 Fields:
Translation:
Cells
-
Involvement of a Jumonji-C domain-containing histone demethylase in DRM2-mediated maintenance of DNA methylation. EMBO Rep. 2010 Dec; 11(12):950-5.
Deleris A, Greenberg MV, Ausin I, Law RW, Moissiard G, Schubert D, Jacobsen SE. PMID: 21052090; PMCID: PMC2999860.
View in:
PubMed Mentions:
37 Fields:
Translation:
AnimalsCells
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Epigenetic reprogramming in plant and animal development. Science. 2010 Oct 29; 330(6004):622-7.
Feng S, Jacobsen SE, Reik W. PMID: 21030646; PMCID: PMC2989926.
View in:
PubMed Mentions:
468 Fields:
Translation:
AnimalsCells
-
The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana. PLoS Genet. 2010 Oct 28; 6(10):e1001182.
Henderson IR, Deleris A, Wong W, Zhong X, Chin HG, Horwitz GA, Kelly KA, Pradhan S, Jacobsen SE. PMID: 21060858; PMCID: PMC2965745.
View in:
PubMed Mentions:
57 Fields:
Translation:
AnimalsCells
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Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases. Nature. 2010 Aug 19; 466(7309):987-91.
Jacob Y, Stroud H, Leblanc C, Feng S, Zhuo L, Caro E, Hassel C, Gutierrez C, Michaels SD, Jacobsen SE. PMID: 20631708; PMCID: PMC2964344.
View in:
PubMed Mentions:
93 Fields:
Translation:
AnimalsCells
-
Relationship between nucleosome positioning and DNA methylation. Nature. 2010 Jul 15; 466(7304):388-92.
Chodavarapu RK, Feng S, Bernatavichute YV, Chen PY, Stroud H, Yu Y, Hetzel JA, Kuo F, Kim J, Cokus SJ, Casero D, Bernal M, Huijser P, Clark AT, Krämer U, Merchant SS, Zhang X, Jacobsen SE, Pellegrini M. PMID: 20512117; PMCID: PMC2964354.
View in:
PubMed Mentions:
349 Fields:
Translation:
HumansAnimalsCells
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A protein complex required for polymerase V transcripts and RNA- directed DNA methylation in Arabidopsis. Curr Biol. 2010 May 25; 20(10):951-6.
Law JA, Ausin I, Johnson LM, Vashisht AA, Zhu JK, Wohlschlegel JA, Jacobsen SE. PMID: 20409711; PMCID: PMC2972704.
View in:
PubMed Mentions:
118 Fields:
Translation:
AnimalsCells
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Conservation and divergence of methylation patterning in plants and animals. Proc Natl Acad Sci U S A. 2010 May 11; 107(19):8689-94.
Feng S, Cokus SJ, Zhang X, Chen PY, Bostick M, Goll MG, Hetzel J, Jain J, Strauss SH, Halpern ME, Ukomadu C, Sadler KC, Pradhan S, Pellegrini M, Jacobsen SE. PMID: 20395551; PMCID: PMC2889301.
View in:
PubMed Mentions:
582 Fields:
Translation:
AnimalsCells
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Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet. 2010 Mar; 11(3):204-20.
Law JA, Jacobsen SE. PMID: 20142834; PMCID: PMC3034103.
View in:
PubMed Mentions:
1618 Fields:
Translation:
AnimalsCells
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Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency. Nature. 2010 Feb 25; 463(7284):1101-5.
Popp C, Dean W, Feng S, Cokus SJ, Andrews S, Pellegrini M, Jacobsen SE, Reik W. PMID: 20098412; PMCID: PMC2965733.
View in:
PubMed Mentions:
392 Fields:
Translation:
AnimalsCells
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Accurate sodium bisulfite sequencing in plants. Epigenetics. 2010 Jan 01; 5(1):47-9.
Henderson IR, Chan SR, Cao X, Johnson L, Jacobsen SE. PMID: 20081358; PMCID: PMC2829377.
View in:
PubMed Mentions:
30 Fields:
Translation:
AnimalsCells
-
IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana. Nat Struct Mol Biol. 2009 Dec; 16(12):1325-7.
Ausin I, Mockler TC, Chory J, Jacobsen SE. PMID: 19915591; PMCID: PMC2842998.
View in:
PubMed Mentions:
62 Fields:
Translation:
AnimalsCells
-
SET7/9 mediated methylation of non-histone proteins in mammalian cells. Epigenetics. 2009 Aug 16; 4(6):383-7.
Pradhan S, Chin HG, Estève PO, Jacobsen SE. PMID: 19684477; PMCID: PMC2974562.
View in:
PubMed Mentions:
62 Fields:
Translation:
HumansAnimalsCells
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A metastable DWARF1 epigenetic mutant affecting plant stature in rice. Proc Natl Acad Sci U S A. 2009 Jul 07; 106(27):11218-23.
Miura K, Agetsuma M, Kitano H, Yoshimura A, Matsuoka M, Jacobsen SE, Ashikari M. PMID: 19541604; PMCID: PMC2708680.
View in:
PubMed Mentions:
76 Fields:
Translation:
AnimalsCells
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Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana. Genome Biol. 2009; 10(6):R62.
Zhang X, Bernatavichute YV, Cokus S, Pellegrini M, Jacobsen SE. PMID: 19508735; PMCID: PMC2718496.
View in:
PubMed Mentions:
275 Fields:
Translation:
AnimalsCells
-
ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing. Nat Struct Mol Biol. 2009 Jul; 16(7):763-8.
Jacob Y, Feng S, LeBlanc CA, Bernatavichute YV, Stroud H, Cokus S, Johnson LM, Pellegrini M, Jacobsen SE, Michaels SD. PMID: 19503079; PMCID: PMC2754316.
View in:
PubMed Mentions:
141 Fields:
Translation:
AnimalsCells
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Molecular biology. Dynamic DNA methylation. Science. 2009 Mar 20; 323(5921):1568-9.
Law JA, Jacobsen SE. PMID: 19299607.
View in:
PubMed Mentions:
17 Fields:
Translation:
AnimalsCells
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Regulation of DNMT1 stability through SET7-mediated lysine methylation in mammalian cells. Proc Natl Acad Sci U S A. 2009 Mar 31; 106(13):5076-81.
Estève PO, Chin HG, Benner J, Feehery GR, Samaranayake M, Horwitz GA, Jacobsen SE, Pradhan S. PMID: 19282482; PMCID: PMC2654809.
View in:
PubMed Mentions:
161 Fields:
Translation:
HumansAnimalsCells
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Determining the conservation of DNA methylation in Arabidopsis. Epigenetics. 2009 Feb 16; 4(2):119-24.
Widman N, Jacobsen SE, Pellegrini M. PMID: 19384058.
View in:
PubMed Mentions:
14 Fields:
Translation:
AnimalsCells
-
Criteria for annotation of plant MicroRNAs. Plant Cell. 2008 Dec; 20(12):3186-90.
Meyers BC, Axtell MJ, Bartel B, Bartel DP, Baulcombe D, Bowman JL, Cao X, Carrington JC, Chen X, Green PJ, Griffiths-Jones S, Jacobsen SE, Mallory AC, Martienssen RA, Poethig RS, Qi Y, Vaucheret H, Voinnet O, Watanabe Y, Weigel D, Zhu JK. PMID: 19074682; PMCID: PMC2630443.
View in:
PubMed Mentions:
643 Fields:
-
UHRF1 binds G9a and participates in p21 transcriptional regulation in mammalian cells. Nucleic Acids Res. 2009 Feb; 37(2):493-505.
Kim JK, Estève PO, Jacobsen SE, Pradhan S. PMID: 19056828; PMCID: PMC2632929.
View in:
PubMed Mentions:
114 Fields:
Translation:
HumansAnimalsCells
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SRA-domain proteins required for DRM2-mediated de novo DNA methylation. PLoS Genet. 2008 Nov; 4(11):e1000280.
Johnson LM, Law JA, Khattar A, Henderson IR, Jacobsen SE. PMID: 19043555; PMCID: PMC2582956.
View in:
PubMed Mentions:
84 Fields:
Translation:
AnimalsCells
-
ORTH/VIM proteins that regulate DNA methylation are functional ubiquitin E3 ligases. Plant J. 2008 Dec; 56(5):704-15.
Kraft E, Bostick M, Jacobsen SE, Callis J. PMID: 18643997; PMCID: PMC2973330.
View in:
PubMed Mentions:
32 Fields:
Translation:
AnimalsCells
-
Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana. PLoS One. 2008 Sep 08; 3(9):e3156.
Bernatavichute YV, Zhang X, Cokus S, Pellegrini M, Jacobsen SE. PMID: 18776934; PMCID: PMC2522283.
View in:
PubMed Mentions:
171 Fields:
Translation:
AnimalsCells
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The SRA domain of UHRF1 flips 5-methylcytosine out of the DNA helix. Nature. 2008 Oct 09; 455(7214):826-9.
Hashimoto H, Horton JR, Zhang X, Bostick M, Jacobsen SE, Cheng X. PMID: 18772888; PMCID: PMC2602803.
View in:
PubMed Mentions:
231 Fields:
Translation:
AnimalsCells
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Sequencing sliced ends reveals microRNA targets. Nat Biotechnol. 2008 Aug; 26(8):881-2.
Henderson IR, Jacobsen SE. PMID: 18688239; PMCID: PMC2989925.
View in:
PubMed Mentions: Fields:
Translation:
Animals
-
Tandem repeats upstream of the Arabidopsis endogene SDC recruit non-CG DNA methylation and initiate siRNA spreading. Genes Dev. 2008 Jun 15; 22(12):1597-606.
Henderson IR, Jacobsen SE. PMID: 18559476; PMCID: PMC2428058.
View in:
PubMed Mentions:
115 Fields:
Translation:
AnimalsCells
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The impact of Arabidopsis on human health: diversifying our portfolio. Cell. 2008 Jun 13; 133(6):939-43.
Jones AM, Chory J, Dangl JL, Estelle M, Jacobsen SE, Meyerowitz EM, Nordborg M, Weigel D. PMID: 18555767; PMCID: PMC3124625.
View in:
PubMed Mentions:
39 Fields:
Translation:
HumansAnimals
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Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature. 2008 Mar 13; 452(7184):215-9.
Cokus SJ, Feng S, Zhang X, Chen Z, Merriman B, Haudenschild CD, Pradhan S, Nelson SF, Pellegrini M, Jacobsen SE. PMID: 18278030; PMCID: PMC2377394.
View in:
PubMed Mentions:
1003 Fields:
Translation:
AnimalsCells
-
Dynamic regulation of ARGONAUTE4 within multiple nuclear bodies in Arabidopsis thaliana. PLoS Genet. 2008 Feb; 4(2):e27.
Li CF, Henderson IR, Song L, Fedoroff N, Lagrange T, Jacobsen SE. PMID: 18266474; PMCID: PMC2233678.
View in:
PubMed Mentions:
45 Fields:
Translation:
AnimalsCells
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Promoter methylation study of the H37/RBM5 tumor suppressor gene from the 3p21.3 human lung cancer tumor suppressor locus. Hum Genet. 2008 Feb; 123(1):55-64.
Oh JJ, Boctor BN, Jimenez CA, Lopez R, Koegel AK, Taschereau EO, Phan DT, Jacobsen SE, Slamon DJ. PMID: 18038152.
View in:
PubMed Mentions:
1 Fields:
Translation:
HumansCells
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Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components. Genes Dev. 2007 Oct 15; 21(20):2539-44.
El-Shami M, Pontier D, Lahmy S, Braun L, Picart C, Vega D, Hakimi MA, Jacobsen SE, Cooke R, Lagrange T. PMID: 17938239; PMCID: PMC2000319.
View in:
PubMed Mentions:
156 Fields:
Translation:
HumansAnimalsCells
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The Arabidopsis LHP1 protein colocalizes with histone H3 Lys27 trimethylation. Nat Struct Mol Biol. 2007 Sep; 14(9):869-71.
Zhang X, Germann S, Blus BJ, Khorasanizadeh S, Gaudin V, Jacobsen SE. PMID: 17676062.
View in:
PubMed Mentions:
141 Fields:
Translation:
AnimalsCells
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UHRF1 plays a role in maintaining DNA methylation in mammalian cells. Science. 2007 Sep 21; 317(5845):1760-4.
Bostick M, Kim JK, Estève PO, Clark A, Pradhan S, Jacobsen SE. PMID: 17673620.
View in:
PubMed Mentions:
673 Fields:
Translation:
HumansAnimalsCells
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Epigenetic inheritance in plants. Nature. 2007 May 24; 447(7143):418-24.
Henderson IR, Jacobsen SE. PMID: 17522675.
View in:
PubMed Mentions:
332 Fields:
Translation:
AnimalsCells
-
Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis. PLoS Biol. 2007 May; 5(5):e129.
Zhang X, Clarenz O, Cokus S, Bernatavichute YV, Pellegrini M, Goodrich J, Jacobsen SE. PMID: 17439305; PMCID: PMC1852588.
View in:
PubMed Mentions:
331 Fields:
Translation:
AnimalsCells
-
Role of RNA polymerase IV in plant small RNA metabolism. Proc Natl Acad Sci U S A. 2007 Mar 13; 104(11):4536-41.
Zhang X, Henderson IR, Lu C, Green PJ, Jacobsen SE. PMID: 17360559; PMCID: PMC1810338.
View in:
PubMed Mentions:
128 Fields:
Translation:
AnimalsCells
-
The SRA methyl-cytosine-binding domain links DNA and histone methylation. Curr Biol. 2007 Feb 20; 17(4):379-84.
Johnson LM, Bostick M, Zhang X, Kraft E, Henderson I, Callis J, Jacobsen SE. PMID: 17239600; PMCID: PMC1850948.
View in:
PubMed Mentions:
200 Fields:
Translation:
AnimalsCells
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Two-step recruitment of RNA-directed DNA methylation to tandem repeats. PLoS Biol. 2006 Nov; 4(11):e363.
Chan SW, Zhang X, Bernatavichute YV, Jacobsen SE. PMID: 17105345; PMCID: PMC1618421.
View in:
PubMed Mentions:
77 Fields:
Translation:
AnimalsCells
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Acylguanidines as small-molecule beta-secretase inhibitors. J Med Chem. 2006 Oct 19; 49(21):6158-61.
Cole DC, Manas ES, Stock JR, Condon JS, Jennings LD, Aulabaugh A, Chopra R, Cowling R, Ellingboe JW, Fan KY, Harrison BL, Hu Y, Jacobsen S, Jin G, Lin L, Lovering FE, Malamas MS, Stahl ML, Strand J, Sukhdeo MN, Svenson K, Turner MJ, Wagner E, Wu J, Zhou P, Bard J. PMID: 17034121.
View in:
PubMed Mentions:
16 Fields:
Translation:
Cells
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Plant genetics: increased outcrossing in hothead mutants. Nature. 2006 Sep 28; 443(7110):E8; discussion E8-9.
Peng P, Chan SW, Shah GA, Jacobsen SE. PMID: 17006468.
View in:
PubMed Mentions:
9 Fields:
Translation:
Animals
-
MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant. Genome Res. 2006 Oct; 16(10):1276-88.
Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC. PMID: 16954541; PMCID: PMC1581437.
View in:
PubMed Mentions:
167 Fields:
Translation:
AnimalsCells
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Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell. 2006 Sep 22; 126(6):1189-201.
Zhang X, Yazaki J, Sundaresan A, Cokus S, Chan SW, Chen H, Henderson IR, Shinn P, Pellegrini M, Jacobsen SE, Ecker JR. PMID: 16949657.
View in:
PubMed Mentions:
793 Fields:
Translation:
AnimalsCells
-
An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana. Cell. 2006 Jul 14; 126(1):93-106.
Li CF, Pontes O, El-Shami M, Henderson IR, Bernatavichute YV, Chan SW, Lagrange T, Pikaard CS, Jacobsen SE. PMID: 16839879.
View in:
PubMed Mentions:
186 Fields:
Translation:
AnimalsCells
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The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center. Cell. 2006 Jul 14; 126(1):79-92.
Pontes O, Li CF, Costa Nunes P, Haag J, Ream T, Vitins A, Jacobsen SE, Pikaard CS. PMID: 16839878.
View in:
PubMed Mentions:
209 Fields:
Translation:
AnimalsCells
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RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in arabidopsis. PLoS Genet. 2006 Jun 02; 2(6):e83.
Chan SW, Henderson IR, Zhang X, Shah G, Chien JS, Jacobsen SE. PMID: 16741558; PMCID: PMC1472700.
View in:
PubMed Mentions:
116 Fields:
Translation:
AnimalsCells
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Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nat Genet. 2006 Jun; 38(6):721-5.
Henderson IR, Zhang X, Lu C, Johnson L, Meyers BC, Green PJ, Jacobsen SE. PMID: 16699516.
View in:
PubMed Mentions:
304 Fields:
Translation:
Cells
-
Epigenetic maintenance of the vernalized state in Arabidopsis thaliana requires LIKE HETEROCHROMATIN PROTEIN 1. Nat Genet. 2006 Jun; 38(6):706-10.
Sung S, He Y, Eshoo TW, Tamada Y, Johnson L, Nakahigashi K, Goto K, Jacobsen SE, Amasino RM. PMID: 16682972.
View in:
PubMed Mentions:
110 Fields:
Translation:
Animals
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LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC. Proc Natl Acad Sci U S A. 2006 Mar 28; 103(13):5012-7.
Mylne JS, Barrett L, Tessadori F, Mesnage S, Johnson L, Bernatavichute YV, Jacobsen SE, Fransz P, Dean C. PMID: 16549797; PMCID: PMC1458786.
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94 Fields:
Translation:
AnimalsCells
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Catalytic properties and kinetic mechanism of human recombinant Lys-9 histone H3 methyltransferase SUV39H1: participation of the chromodomain in enzymatic catalysis. Biochemistry. 2006 Mar 14; 45(10):3272-84.
Chin HG, Patnaik D, Estève PO, Jacobsen SE, Pradhan S. PMID: 16519522.
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PubMed Mentions:
39 Fields:
Translation:
HumansAnimalsCells
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Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2. Science. 2006 Jan 20; 311(5759):395-8.
Goll MG, Kirpekar F, Maggert KA, Yoder JA, Hsieh CL, Zhang X, Golic KG, Jacobsen SE, Bestor TH. PMID: 16424344.
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PubMed Mentions:
451 Fields:
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HumansAnimalsCells
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Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis. Genome Biol. 2005; 6(11):R90.
Tran RK, Zilberman D, de Bustos C, Ditt RF, Henikoff JG, Lindroth AM, Delrow J, Boyle T, Kwong S, Bryson TD, Jacobsen SE, Henikoff S. PMID: 16277745; PMCID: PMC1297646.
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47 Fields:
Translation:
AnimalsCells
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Gardening the genome: DNA methylation in Arabidopsis thaliana. Nat Rev Genet. 2005 May; 6(5):351-60.
Chan SW, Henderson IR, Jacobsen SE. PMID: 15861207.
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362 Fields:
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AnimalsCells
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DDM1 binds Arabidopsis methyl-CpG binding domain proteins and affects their subnuclear localization. Plant Cell. 2005 May; 17(5):1549-58.
Zemach A, Li Y, Wayburn B, Ben-Meir H, Kiss V, Avivi Y, Kalchenko V, Jacobsen SE, Grafi G. PMID: 15805479; PMCID: PMC1091773.
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PubMed Mentions:
38 Fields:
Translation:
AnimalsCells
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DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes. Curr Biol. 2005 Jan 26; 15(2):154-9.
Tran RK, Henikoff JG, Zilberman D, Ditt RF, Jacobsen SE, Henikoff S. PMID: 15668172.
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PubMed Mentions:
102 Fields:
Translation:
AnimalsCells
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Applications of DNA tiling arrays for whole-genome analysis. Genomics. 2005 Jan; 85(1):1-15.
Mockler TC, Chan S, Sundaresan A, Chen H, Jacobsen SE, Ecker JR. PMID: 15607417.
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PubMed Mentions:
104 Fields:
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HumansAnimalsCells
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Mass spectrometry analysis of Arabidopsis histone H3 reveals distinct combinations of post-translational modifications. Nucleic Acids Res. 2004; 32(22):6511-8.
Johnson L, Mollah S, Garcia BA, Muratore TL, Shabanowitz J, Hunt DF, Jacobsen SE. PMID: 15598823; PMCID: PMC545460.
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PubMed Mentions:
90 Fields:
Translation:
Cells
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Substrate specificity and kinetic mechanism of mammalian G9a histone H3 methyltransferase. J Biol Chem. 2004 Dec 17; 279(51):53248-58.
Patnaik D, Chin HG, Estève PO, Benner J, Jacobsen SE, Pradhan S. PMID: 15485804.
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73 Fields:
Translation:
AnimalsCells
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Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3. EMBO J. 2004 Oct 27; 23(21):4286-96.
Lindroth AM, Shultis D, Jasencakova Z, Fuchs J, Johnson L, Schubert D, Patnaik D, Pradhan S, Goodrich J, Schubert I, Jenuwein T, Khorasanizadeh S, Jacobsen SE. PMID: 15457214; PMCID: PMC524394.
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PubMed Mentions:
152 Fields:
Translation:
HumansAnimalsCells
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Small interfering RNA-induced transcriptional gene silencing in human cells. Science. 2004 Aug 27; 305(5688):1289-92.
Morris KV, Chan SW, Jacobsen SE, Looney DJ. PMID: 15297624.
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PubMed Mentions:
348 Fields:
Translation:
HumansCells
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Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats. Curr Biol. 2004 Jul 13; 14(13):1214-20.
Zilberman D, Cao X, Johansen LK, Xie Z, Carrington JC, Jacobsen SE. PMID: 15242620.
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PubMed Mentions:
112 Fields:
Translation:
AnimalsCells
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Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana. Chromosoma. 2004 Mar; 112(6):308-15.
Jackson JP, Johnson L, Jasencakova Z, Zhang X, PerezBurgos L, Singh PB, Cheng X, Schubert I, Jenuwein T, Jacobsen SE. PMID: 15014946.
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PubMed Mentions:
134 Fields:
Translation:
AnimalsCells
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RNA silencing genes control de novo DNA methylation. Science. 2004 Feb 27; 303(5662):1336.
Chan SW, Zilberman D, Xie Z, Johansen LK, Carrington JC, Jacobsen SE. PMID: 14988555.
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PubMed Mentions:
224 Fields:
Translation:
AnimalsCells
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Genetic and functional diversification of small RNA pathways in plants. PLoS Biol. 2004 May; 2(5):E104.
Xie Z, Johansen LK, Gustafson AM, Kasschau KD, Lellis AD, Zilberman D, Jacobsen SE, Carrington JC. PMID: 15024409; PMCID: PMC350667.
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PubMed Mentions:
677 Fields:
Translation:
AnimalsCells
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Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation. Curr Biol. 2003 Dec 16; 13(24):2212-7.
Cao X, Aufsatz W, Zilberman D, Mette MF, Huang MS, Matzke M, Jacobsen SE. PMID: 14680640.
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PubMed Mentions:
207 Fields:
Translation:
AnimalsCells
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One-way control of FWA imprinting in Arabidopsis endosperm by DNA methylation. Science. 2004 Jan 23; 303(5657):521-3.
Kinoshita T, Miura A, Choi Y, Kinoshita Y, Cao X, Jacobsen SE, Fischer RL, Kakutani T. PMID: 14631047.
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PubMed Mentions:
218 Fields:
Translation:
AnimalsCells
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Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis. Curr Biol. 2003 Mar 04; 13(5):421-6.
Kato M, Miura A, Bender J, Jacobsen SE, Kakutani T. PMID: 12620192.
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PubMed Mentions:
132 Fields:
Translation:
AnimalsCells
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ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science. 2003 Jan 31; 299(5607):716-9.
Zilberman D, Cao X, Jacobsen SE. PMID: 12522258.
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PubMed Mentions:
434 Fields:
Translation:
AnimalsCells
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DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis. EMBO J. 2002 Dec 02; 21(23):6549-59.
Soppe WJ, Jasencakova Z, Houben A, Kakutani T, Meister A, Huang MS, Jacobsen SE, Schubert I, Fransz PF. PMID: 12456661; PMCID: PMC136960.
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PubMed Mentions:
188 Fields:
Translation:
AnimalsCells
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DICER-LIKE1: blind men and elephants in Arabidopsis development. Trends Plant Sci. 2002 Nov; 7(11):487-91.
Schauer SE, Jacobsen SE, Meinke DW, Ray A. PMID: 12417148.
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PubMed Mentions:
186 Fields:
Translation:
Animals
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Interplay between two epigenetic marks. DNA methylation and histone H3 lysine 9 methylation. Curr Biol. 2002 Aug 20; 12(16):1360-7.
Johnson L, Cao X, Jacobsen S. PMID: 12194816.
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PubMed Mentions:
203 Fields:
Translation:
AnimalsCells
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Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes. Proc Natl Acad Sci U S A. 2002 Dec 10; 99 Suppl 4:16491-8.
Cao X, Jacobsen SE. PMID: 12151602; PMCID: PMC139913.
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PubMed Mentions:
247 Fields:
Translation:
HumansAnimalsCells
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DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in arabidopsis. Cell. 2002 Jul 12; 110(1):33-42.
Choi Y, Gehring M, Johnson L, Hannon M, Harada JJ, Goldberg RB, Jacobsen SE, Fischer RL. PMID: 12150995.
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PubMed Mentions:
300 Fields:
Translation:
HumansAnimalsCells
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Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing. Curr Biol. 2002 Jul 09; 12(13):1138-44.
Cao X, Jacobsen SE. PMID: 12121623.
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PubMed Mentions:
349 Fields:
Translation:
AnimalsCells
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Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase. Nature. 2002 Apr 04; 416(6880):556-60.
Jackson JP, Lindroth AM, Cao X, Jacobsen SE. PMID: 11898023.
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PubMed Mentions:
453 Fields:
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HumansAnimalsCells
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Ectopic hypermethylation of flower-specific genes in Arabidopsis. Curr Biol. 2000 Feb 24; 10(4):179-86.
Jacobsen SE, Sakai H, Finnegan EJ, Cao X, Meyerowitz EM. PMID: 10704409.
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PubMed Mentions:
86 Fields:
Translation:
AnimalsCells
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Disruption of an RNA helicase/RNAse III gene in Arabidopsis causes unregulated cell division in floral meristems. Development. 1999 Dec; 126(23):5231-43.
Jacobsen SE, Running MP, Meyerowitz EM. PMID: 10556049.
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PubMed Mentions:
140 Fields:
Translation:
AnimalsCells