Kathrin Plath

Title(s)Professor, Biological Chemistry
SchoolMedicine
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    Collapse Research 
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    Leveraging genetic variation to dissect gene regulatory networks of reprogramming to pluripotency
    NIH U01HG012079Sep 1, 2021 - May 31, 2026
    Role: Co-Principal Investigator
    Epigenetic control of the human X chromosome
    NIH R01HD098387May 1, 2019 - Apr 30, 2024
    Role: Principal Investigator
    Defining the role of the E3-ligase APC/C and ubiquitination in X-inactivation
    NIH R21HD094172Apr 1, 2018 - Mar 31, 2020
    Role: Principal Investigator
    Elucidating an Xist-dependent program of sexually dimorphic alternative splicing in the mammalian brain
    NIH R01MH109166Jul 1, 2016 - Apr 30, 2021
    Role: Co-Principal Investigator
    Mechanism of chromatin remodeling and gene silencing by the lncRNAs Xist and Tsix
    NIH R01GM115233Aug 1, 2015 - Jun 30, 2019
    Role: Principal Investigator
    Reprogramming Genetic Networks to a Pluripotent State
    NIH P01GM099134Aug 1, 2011 - Apr 30, 2022
    Role: Principal Investigator
    CHROMATIN AND EPIGENETIC INHERITANCE
    NIH DP2OD001686Sep 30, 2007 - Aug 31, 2012
    Role: Principal Investigator

    Collapse Bibliographic 
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Genome-wide screening identifies Polycomb repressive complex 1.3 as an essential regulator of human naïve pluripotent cell reprogramming. Sci Adv. 2022 Mar 25; 8(12):eabk0013. Collier AJ, Bendall A, Fabian C, Malcolm AA, Tilgner K, Semprich CI, Wojdyla K, Nisi PS, Kishore K, Roamio Franklin VN, Mirshekar-Syahkal B, D'Santos C, Plath K, Yusa K, Rugg-Gunn PJ. PMID: 35333572; PMCID: PMC8956265.
      View in: PubMed   Mentions:
    2. Transcriptional, Electrophysiological, and Metabolic Characterizations of hESC-Derived First and Second Heart Fields Demonstrate a Potential Role of TBX5 in Cardiomyocyte Maturation. Front Cell Dev Biol. 2021; 9:787684. Pezhouman A, Nguyen NB, Sercel AJ, Nguyen TL, Daraei A, Sabri S, Chapski DJ, Zheng M, Patananan AN, Ernst J, Plath K, Vondriska TM, Teitell MA, Ardehali R. PMID: 34988079; PMCID: PMC8722677.
      View in: PubMed   Mentions:
    3. Xist nucleates local protein gradients to propagate silencing across the X chromosome. Cell. 2021 Dec 09; 184(25):6212. Markaki Y, Chong JG, Wang Y, Jacobson EC, Luong C, Tan SYX, Jachowicz JW, Strehle M, Maestrini D, Banerjee AK, Mistry BA, Dror I, Dossin F, Sch?neberg J, Heard E, Guttman M, Chou T, Plath K. PMID: 34890555; PMCID: PMC8722464.
      View in: PubMed   Mentions:
    4. Xist nucleates local protein gradients to propagate silencing across the X chromosome. Cell. 2021 12 09; 184(25):6174-6192.e32. Markaki Y, Gan Chong J, Wang Y, Jacobson EC, Luong C, Tan SYX, Jachowicz JW, Strehle M, Maestrini D, Banerjee AK, Mistry BA, Dror I, Dossin F, Schöneberg J, Heard E, Guttman M, Chou T, Plath K. PMID: 34813726; PMCID: PMC8671326.
      View in: PubMed   Mentions:
    5. RNA promotes the formation of spatial compartments in the nucleus. Cell. 2021 11 11; 184(23):5775-5790.e30. Quinodoz SA, Jachowicz JW, Bhat P, Ollikainen N, Banerjee AK, Goronzy IN, Blanco MR, Chovanec P, Chow A, Markaki Y, Thai J, Plath K, Guttman M. PMID: 34739832; PMCID: PMC9115877.
      View in: PubMed   Mentions:
    6. Defining the nature of human pluripotent stem cell-derived interneurons via single-cell analysis. Stem Cell Reports. 2021 10 12; 16(10):2548-2564. Allison T, Langerman J, Sabri S, Otero-Garcia M, Lund A, Huang J, Wei X, Samarasinghe RA, Polioudakis D, Mody I, Cobos I, Novitch BG, Geschwind DH, Plath K, Lowry WE. PMID: 34506726; PMCID: PMC8514853.
      View in: PubMed   Mentions:    Fields:    
    7. Identification of neural oscillations and epileptiform changes in human brain organoids. Nat Neurosci. 2021 10; 24(10):1488-1500. Samarasinghe RA, Miranda OA, Buth JE, Mitchell S, Ferando I, Watanabe M, Allison TF, Kurdian A, Fotion NN, Gandal MJ, Golshani P, Plath K, Lowry WE, Parent JM, Mody I, Novitch BG. PMID: 34426698.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    8. The transcription factor code in iPSC reprogramming. Curr Opin Genet Dev. 2021 10; 70:89-96. Deng W, Jacobson EC, Collier AJ, Plath K. PMID: 34246082.
      View in: PubMed   Mentions:    Fields:    
    9. Transcriptional analysis of cystic fibrosis airways at single-cell resolution reveals altered epithelial cell states and composition. Nat Med. 2021 05; 27(5):806-814. Carraro G, Langerman J, Sabri S, Lorenzana Z, Purkayastha A, Zhang G, Konda B, Aros CJ, Calvert BA, Szymaniak A, Wilson E, Mulligan M, Bhatt P, Lu J, Vijayaraj P, Yao C, Shia DW, Lund AJ, Israely E, Rickabaugh TM, Ernst J, Mense M, Randell SH, Vladar EK, Ryan AL, Plath K, Mahoney JE, Stripp BR, Gomperts BN. PMID: 33958799.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    10. SARS-CoV-2 infection rewires host cell metabolism and is potentially susceptible to mTORC1 inhibition. Nat Commun. 2021 03 25; 12(1):1876. Mullen PJ, Garcia G, Purkayastha A, Matulionis N, Schmid EW, Momcilovic M, Sen C, Langerman J, Ramaiah A, Shackelford DB, Damoiseaux R, French SW, Plath K, Gomperts BN, Arumugaswami V, Christofk HR. PMID: 33767183; PMCID: PMC7994801.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCells
    11. Carboxylate-Modified Magnetic Bead (CMMB)-Based Isopropanol Gradient Peptide Fractionation (CIF) Enables Rapid and Robust Off-Line Peptide Mixture Fractionation in Bottom-Up Proteomics. Mol Cell Proteomics. 2021; 20:100039. Deng W, Sha J, Plath K, Wohlschlegel JA. PMID: 33476790; PMCID: PMC7950212.
      View in: PubMed   Mentions:    Fields:    
    12. Single-cell analysis of the developing human testis reveals somatic niche cell specification and fetal germline stem cell establishment. Cell Stem Cell. 2021 04 01; 28(4):764-778.e4. Guo J, Sosa E, Chitiashvili T, Nie X, Rojas EJ, Oliver E, DonorConnect, Plath K, Hotaling JM, Stukenborg JB, Clark AT, Cairns BR. PMID: 33453151; PMCID: PMC8026516.
      View in: PubMed   Mentions:
    13. Pressure-Driven Mitochondrial Transfer Pipeline Generates Mammalian Cells of Desired Genetic Combinations and Fates. Cell Rep. 2020 12 29; 33(13):108562. Patananan AN, Sercel AJ, Wu TH, Ahsan FM, Torres A, Kennedy SAL, Vandiver A, Collier AJ, Mehrabi A, Van Lew J, Zakin L, Rodriguez N, Sixto M, Tadros W, Lazar A, Sieling PA, Nguyen TL, Dawson ER, Braas D, Golovato J, Cisneros L, Vaske C, Plath K, Rabizadeh S, Niazi KR, Chiou PY, Teitell MA. PMID: 33378680; PMCID: PMC7927156.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCells
    14. Chromatin and Nuclear Architecture in Stem Cells. Stem Cell Reports. 2020 12 08; 15(6):1155-1157. Meshorer E, Plath K. PMID: 33296671; PMCID: PMC7724516.
      View in: PubMed   Mentions:
    15. Female human primordial germ cells display X-chromosome dosage compensation despite the absence of X-inactivation. Nat Cell Biol. 2020 12; 22(12):1436-1446. Chitiashvili T, Dror I, Kim R, Hsu FM, Chaudhari R, Pandolfi E, Chen D, Liebscher S, Schenke-Layland K, Plath K, Clark A. PMID: 33257808; PMCID: PMC7717582.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    16. Direct Exposure to SARS-CoV-2 and Cigarette Smoke Increases Infection Severity and Alters the Stem Cell-Derived Airway Repair Response. Cell Stem Cell. 2020 12 03; 27(6):869-875.e4. Purkayastha A, Sen C, Garcia G, Langerman J, Shia DW, Meneses LK, Vijayaraj P, Durra A, Koloff CR, Freund DR, Chi J, Rickabaugh TM, Mulay A, Konda B, Sim MS, Stripp BR, Plath K, Arumugaswami V, Gomperts BN. PMID: 33259798; PMCID: PMC7670932.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansCells
    17. Publisher Correction: A protein assembly mediates Xist localization and gene silencing. Nature. 2020 Oct; 586(7830):E30. Pandya-Jones A, Markaki Y, Serizay J, Chitiashvili T, Leon WRM, Damianov A, Chronis C, Papp B, Chen CK, McKee R, Wang XJ, Chau A, Sabri S, Leonhardt H, Zheng S, Guttman M, Black DL, Plath K. PMID: 33005055.
      View in: PubMed   Mentions:    Fields:    
    18. A protein assembly mediates Xist localization and gene silencing. Nature. 2020 11; 587(7832):145-151. Pandya-Jones A, Markaki Y, Serizay J, Chitiashvili T, Mancia Leon WR, Damianov A, Chronis C, Papp B, Chen CK, McKee R, Wang XJ, Chau A, Sabri S, Leonhardt H, Zheng S, Guttman M, Black DL, Plath K. PMID: 32908311; PMCID: PMC7644664.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansAnimalsCells
    19. Direct exposure to SARS-CoV-2 and cigarette smoke increases infection severity and alters the stem cell-derived airway repair response. bioRxiv. 2020 Jul 29. Purkayastha A, Sen C, Garcia G, Langerman J, Vijayaraj P, Shia DW, Meneses LK, Rickabaugh TM, Mulay A, Konda B, Sim MS, Stripp BR, Plath K, Arumugaswami V, Gomperts BN. PMID: 32766588; PMCID: PMC7402049.
      View in: PubMed   Mentions:
    20. A Human Skeletal Muscle Atlas Identifies the Trajectories of Stem and Progenitor Cells across Development and from Human Pluripotent Stem Cells. Cell Stem Cell. 2020 Jul 02; 27(1):181-185. Xi H, Langerman J, Sabri S, Chien P, Young CS, Younesi S, Hicks M, Gonzalez K, Fujiwara W, Marzi J, Liebscher S, Spencer M, Van Handel B, Evseenko D, Schenke-Layland K, Plath K, Pyle AD. PMID: 32619514; PMCID: PMC9012334.
      View in: PubMed   Mentions:
    21. A Human Skeletal Muscle Atlas Identifies the Trajectories of Stem and Progenitor Cells across Development and from Human Pluripotent Stem Cells. Cell Stem Cell. 2020 07 02; 27(1):158-176.e10. Xi H, Langerman J, Sabri S, Chien P, Young CS, Younesi S, Hicks M, Gonzalez K, Fujiwara W, Marzi J, Liebscher S, Spencer M, Van Handel B, Evseenko D, Schenke-Layland K, Plath K, Pyle AD. PMID: 32396864; PMCID: PMC7367475.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    22. Defining Transcriptional Signatures of Human Hair Follicle Cell States. J Invest Dermatol. 2020 04; 140(4):764-773.e4. Takahashi R, Grzenda A, Allison TF, Rawnsley J, Balin SJ, Sabri S, Plath K, Lowry WE. PMID: 31676413; PMCID: PMC7093259.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    23. A Single-Cell Transcriptomic Atlas of Human Neocortical Development during Mid-gestation. Neuron. 2019 09 04; 103(5):785-801.e8. Polioudakis D, de la Torre-Ubieta L, Langerman J, Elkins AG, Shi X, Stein JL, Vuong CK, Nichterwitz S, Gevorgian M, Opland CK, Lu D, Connell W, Ruzzo EK, Lowe JK, Hadzic T, Hinz FI, Sabri S, Lowry WE, Gerstein MB, Plath K, Geschwind DH. PMID: 31303374; PMCID: PMC6831089.
      View in: PubMed   Mentions: 64     Fields:    Translation:HumansCells
    24. DNA methylation estimation using methylation-sensitive restriction enzyme bisulfite sequencing (MREBS). PLoS One. 2019; 14(4):e0214368. Bonora G, Rubbi L, Morselli M, Ma F, Chronis C, Plath K, Pellegrini M. PMID: 30946758; PMCID: PMC6448829.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    25. The BAF and PRC2 Complex Subunits Dpf2 and Eed Antagonistically Converge on Tbx3 to Control ESC Differentiation. Cell Stem Cell. 2019 01 03; 24(1):138-152.e8. Zhang W, Chronis C, Chen X, Zhang H, Spalinskas R, Pardo M, Chen L, Wu G, Zhu Z, Yu Y, Yu L, Choudhary J, Nichols J, Parast MM, Greber B, Sahlén P, Plath K. PMID: 30609396; PMCID: PMC6486830.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    26. Comparison of reprogramming factor targets reveals both species-specific and conserved mechanisms in early iPSC reprogramming. BMC Genomics. 2018 Dec 22; 19(1):956. Fu K, Chronis C, Soufi A, Bonora G, Edwards M, Smale ST, Zaret KS, Plath K, Pellegrini M. PMID: 30577748; PMCID: PMC6303873.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    27. Promoter-Enhancer Communication Occurs Primarily within Insulated Neighborhoods. Mol Cell. 2019 01 17; 73(2):250-263.e5. Sun F, Chronis C, Kronenberg M, Chen XF, Su T, Lay FD, Plath K, Kurdistani SK, Carey MF. PMID: 30527662; PMCID: PMC6338517.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    28. Reduced MEK inhibition preserves genomic stability in naive human embryonic stem cells. Nat Methods. 2018 09; 15(9):732-740. Di Stefano B, Ueda M, Sabri S, Brumbaugh J, Huebner AJ, Sahakyan A, Clement K, Clowers KJ, Erickson AR, Shioda K, Gygi SP, Gu H, Shioda T, Meissner A, Takashima Y, Plath K, Hochedlinger K. PMID: 30127506; PMCID: PMC6127858.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansCells
    29. Mapping Metabolism: Monitoring Lactate Dehydrogenase Activity Directly in Tissue. J Vis Exp. 2018 06 21; (136). Jelinek D, Flores A, Uebelhoer M, Pasque V, Plath K, Iruela-Arispe ML, Christofk HR, Lowry WE, Coller HA. PMID: 29985359; PMCID: PMC6101961.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    30. The Role of Xist in X-Chromosome Dosage Compensation. Trends Cell Biol. 2018 12; 28(12):999-1013. Sahakyan A, Yang Y, Plath K. PMID: 29910081; PMCID: PMC6249047.
      View in: PubMed   Mentions: 38     Fields:    Translation:HumansAnimalsCells
    31. Identification and Single-Cell Functional Characterization of an Endodermally Biased Pluripotent Substate in Human Embryonic Stem Cells. Stem Cell Reports. 2018 06 05; 10(6):1895-1907. Allison TF, Smith AJH, Anastassiadis K, Sloane-Stanley J, Biga V, Stavish D, Hackland J, Sabri S, Langerman J, Jones M, Plath K, Coca D, Barbaric I, Gokhale P, Andrews PW. PMID: 29779895; PMCID: PMC5993559.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansCells
    32. Loss of MECP2 Leads to Activation of P53 and Neuronal Senescence. Stem Cell Reports. 2018 05 08; 10(5):1453-1463. Ohashi M, Korsakova E, Allen D, Lee P, Fu K, Vargas BS, Cinkornpumin J, Salas C, Park JC, Germanguz I, Langerman J, Chronis C, Kuoy E, Tran S, Xiao X, Pellegrini M, Plath K, Lowry WE. PMID: 29742391; PMCID: PMC5995366.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansCells
    33. X Chromosome Dosage Influences DNA Methylation Dynamics during Reprogramming to Mouse iPSCs. Stem Cell Reports. 2018 05 08; 10(5):1537-1550. Pasque V, Karnik R, Chronis C, Petrella P, Langerman J, Bonora G, Song J, Vanheer L, Sadhu Dimashkie A, Meissner A, Plath K. PMID: 29681539; PMCID: PMC5995367.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    34. Correction: Epigenetic resetting of human pluripotency (doi:10.1242/dev.146811). Development. 2018 04 18; 145(8). Guo G, von Meyenn F, Rostovskaya M, Clarke J, Dietmann S, Baker D, Sahakyan A, Myers S, Bertone P, Reik W, Plath K, Smith A. PMID: 29669738; PMCID: PMC5964655.
      View in: PubMed   Mentions: 2     Fields:    
    35. Analysis of cardiomyocyte clonal expansion during mouse heart development and injury. Nat Commun. 2018 02 21; 9(1):754. Sereti KI, Nguyen NB, Kamran P, Zhao P, Ranjbarvaziri S, Park S, Sabri S, Engel JL, Sung K, Kulkarni RP, Ding Y, Hsiai TK, Plath K, Ernst J, Sahoo D, Mikkola HKA, Iruela-Arispe ML, Ardehali R. PMID: 29467410; PMCID: PMC5821855.
      View in: PubMed   Mentions: 34     Fields:    Translation:AnimalsCells
    36. High-Throughput Screening of a Luciferase Reporter of Gene Silencing on the Inactive X Chromosome. Methods Mol Biol. 2018; 1755:75-87. Keegan A, Plath K, Damoiseaux R. PMID: 29671264.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    37. Regulation of X-chromosome dosage compensation in human: mechanisms and model systems. Philos Trans R Soc Lond B Biol Sci. 2017 Nov 05; 372(1733). Sahakyan A, Plath K, Rougeulle C. PMID: 28947660; PMCID: PMC5627163.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansAnimalsCells
    38. Epigenetic resetting of human pluripotency. Development. 2017 08 01; 144(15):2748-2763. Guo G, von Meyenn F, Rostovskaya M, Clarke J, Dietmann S, Baker D, Sahakyan A, Myers S, Bertone P, Reik W, Plath K, Smith A. PMID: 28765214; PMCID: PMC5560041.
      View in: PubMed   Mentions: 64     Fields:    Translation:HumansAnimalsCells
    39. Cbx3 maintains lineage specificity during neural differentiation. Genes Dev. 2017 02 01; 31(3):241-246. Huang C, Su T, Xue Y, Cheng C, Lay FD, McKee RA, Li M, Vashisht A, Wohlschlegel J, Novitch BG, Plath K, Kurdistani SK, Carey M. PMID: 28270516; PMCID: PMC5358721.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    40. Cooperative Binding of Transcription Factors Orchestrates Reprogramming. Cell. 2017 01 26; 168(3):442-459.e20. Chronis C, Fiziev P, Papp B, Butz S, Bonora G, Sabri S, Ernst J, Plath K. PMID: 28111071; PMCID: PMC5302508.
      View in: PubMed   Mentions: 143     Fields:    Translation:AnimalsCells
    41. Human Embryonic Stem Cells Do Not Change Their X Inactivation Status during Differentiation. Cell Rep. 2017 01 03; 18(1):54-67. Patel S, Bonora G, Sahakyan A, Kim R, Chronis C, Langerman J, Fitz-Gibbon S, Rubbi L, Skelton RJP, Ardehali R, Pellegrini M, Lowry WE, Clark AT, Plath K. PMID: 27989715; PMCID: PMC5214931.
      View in: PubMed   Mentions: 34     Fields:    Translation:HumansCells
    42. Human Naive Pluripotent Stem Cells Model X Chromosome Dampening and X Inactivation. Cell Stem Cell. 2017 01 05; 20(1):87-101. Sahakyan A, Kim R, Chronis C, Sabri S, Bonora G, Theunissen TW, Kuoy E, Langerman J, Clark AT, Jaenisch R, Plath K. PMID: 27989770; PMCID: PMC5218861.
      View in: PubMed   Mentions: 73     Fields:    Translation:HumansCells
    43. Glycolytic Metabolism Plays a Functional Role in Regulating Human Pluripotent Stem Cell State. Cell Stem Cell. 2016 10 06; 19(4):476-490. Gu W, Gaeta X, Sahakyan A, Chan AB, Hong CS, Kim R, Braas D, Plath K, Lowry WE, Christofk HR. PMID: 27618217; PMCID: PMC5055460.
      View in: PubMed   Mentions: 80     Fields:    Translation:HumansAnimalsCells
    44. Transcriptome Encyclopedia of Early Human Development. Cell. 2016 May 05; 165(4):777-9. Sahakyan A, Plath K. PMID: 27153491; PMCID: PMC4859939.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    45. The "lnc" between 3D chromatin structure and X chromosome inactivation. Semin Cell Dev Biol. 2016 08; 56:35-47. Pandya-Jones A, Plath K. PMID: 27062886; PMCID: PMC4955722.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansAnimalsCells
    46. Naive Human Pluripotent Cells Feature a Methylation Landscape Devoid of Blastocyst or Germline Memory. Cell Stem Cell. 2016 Mar 03; 18(3):323-329. Pastor WA, Chen D, Liu W, Kim R, Sahakyan A, Lukianchikov A, Plath K, Jacobsen SE, Clark AT. PMID: 26853856; PMCID: PMC4779431.
      View in: PubMed   Mentions: 83     Fields:    Translation:HumansAnimalsCells
    47. X chromosome reactivation in reprogramming and in development. Curr Opin Cell Biol. 2015 Dec; 37:75-83. Pasque V, Plath K. PMID: 26540406; PMCID: PMC4688236.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansAnimalsCells
    48. A high-throughput screen of inactive X chromosome reactivation identifies the enhancement of DNA demethylation by 5-aza-2'-dC upon inhibition of ribonucleotide reductase. Epigenetics Chromatin. 2015; 8:42. Minkovsky A, Sahakyan A, Bonora G, Damoiseaux R, Dimitrova E, Rubbi L, Pellegrini M, Radu CG, Plath K. PMID: 26468331; PMCID: PMC4604769.
      View in: PubMed   Mentions: 17     Fields:    
    49. The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3. Nature. 2015 May 14; 521(7551):232-6. McHugh CA, Chen CK, Chow A, Surka CF, Tran C, McDonel P, Pandya-Jones A, Blanco M, Burghard C, Moradian A, Sweredoski MJ, Shishkin AA, Su J, Lander ES, Hess S, Plath K, Guttman M. PMID: 25915022; PMCID: PMC4516396.
      View in: PubMed   Mentions: 371     Fields:    Translation:AnimalsCells
    50. X chromosome reactivation dynamics reveal stages of reprogramming to pluripotency. Cell. 2014 Dec 18; 159(7):1681-97. Pasque V, Tchieu J, Karnik R, Uyeda M, Sadhu Dimashkie A, Case D, Papp B, Bonora G, Patel S, Ho R, Schmidt R, McKee R, Sado T, Tada T, Meissner A, Plath K. PMID: 25525883; PMCID: PMC4282187.
      View in: PubMed   Mentions: 37     Fields:    Translation:AnimalsCells
    51. A mechanistic link between gene regulation and genome architecture in mammalian development. Curr Opin Genet Dev. 2014 Aug; 27:92-101. Bonora G, Plath K, Denholtz M. PMID: 24998386; PMCID: PMC4125518.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansAnimalsCells
    52. The Mbd1-Atf7ip-Setdb1 pathway contributes to the maintenance of X chromosome inactivation. Epigenetics Chromatin. 2014; 7:12. Minkovsky A, Sahakyan A, Rankin-Gee E, Bonora G, Patel S, Plath K. PMID: 25028596; PMCID: PMC4099106.
      View in: PubMed   Mentions: 26     Fields:    
    53. Long-range chromatin contacts in embryonic stem cells reveal a role for pluripotency factors and polycomb proteins in genome organization. Cell Stem Cell. 2013 Nov 07; 13(5):602-16. Denholtz M, Bonora G, Chronis C, Splinter E, de Laat W, Ernst J, Pellegrini M, Plath K. PMID: 24035354; PMCID: PMC3825755.
      View in: PubMed   Mentions: 103     Fields:    Translation:AnimalsCells
    54. Initial characterization of histone H3 serine 10 O-acetylation. Epigenetics. 2013 Oct; 8(10):1101-13. Britton LM, Newhart A, Bhanu NV, Sridharan R, Gonzales-Cope M, Plath K, Janicki SM, Garcia BA. PMID: 23949383; PMCID: PMC3891691.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansAnimalsCells
    55. The Xist lncRNA exploits three-dimensional genome architecture to spread across the X chromosome. Science. 2013 Aug 16; 341(6147):1237973. Engreitz JM, Pandya-Jones A, McDonel P, Shishkin A, Sirokman K, Surka C, Kadri S, Xing J, Goren A, Lander ES, Plath K, Guttman M. PMID: 23828888; PMCID: PMC3778663.
      View in: PubMed   Mentions: 379     Fields:    Translation:AnimalsCells
    56. A new route to human embryonic stem cells. Nat Med. 2013 Jul; 19(7):820-1. Trounson A, Daley GQ, Pasque V, Plath K. PMID: 23836223.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    57. Stage-specific regulation of reprogramming to induced pluripotent stem cells by Wnt signaling and T cell factor proteins. Cell Rep. 2013 Jun 27; 3(6):2113-26. Ho R, Papp B, Hoffman JA, Merrill BJ, Plath K. PMID: 23791530; PMCID: PMC3700671.
      View in: PubMed   Mentions: 42     Fields:    Translation:AnimalsCells
    58. Proteomic and genomic approaches reveal critical functions of H3K9 methylation and heterochromatin protein-1γ in reprogramming to pluripotency. Nat Cell Biol. 2013 Jul; 15(7):872-82. Sridharan R, Gonzales-Cope M, Chronis C, Bonora G, McKee R, Huang C, Patel S, Lopez D, Mishra N, Pellegrini M, Carey M, Garcia BA, Plath K. PMID: 23748610; PMCID: PMC3733997.
      View in: PubMed   Mentions: 100     Fields:    Translation:AnimalsCells
    59. The pluripotency factor-bound intron 1 of Xist is dispensable for X chromosome inactivation and reactivation in vitro and in vivo. Cell Rep. 2013 Mar 28; 3(3):905-18. Minkovsky A, Barakat TS, Sellami N, Chin MH, Gunhanlar N, Gribnau J, Plath K. PMID: 23523354; PMCID: PMC3615097.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    60. Epigenetics of reprogramming to induced pluripotency. Cell. 2013 Mar 14; 152(6):1324-43. Papp B, Plath K. PMID: 23498940; PMCID: PMC3602907.
      View in: PubMed   Mentions: 130     Fields:    Translation:HumansAnimalsCells
    61. Pluripotency in 3D: genome organization in pluripotent cells. Curr Opin Cell Biol. 2012 Dec; 24(6):793-801. Denholtz M, Plath K. PMID: 23199754; PMCID: PMC3540188.
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    62. Mediator and SAGA have distinct roles in Pol II preinitiation complex assembly and function. Cell Rep. 2012 Nov 29; 2(5):1061-7. Chen XF, Lehmann L, Lin JJ, Vashisht A, Schmidt R, Ferrari R, Huang C, McKee R, Mosley A, Plath K, Kurdistani SK, Wohlschlegel J, Carey M. PMID: 23177621; PMCID: PMC3513640.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansAnimalsCells
    63. Stem cells in the land of the rising sun: ISSCR 2012. Cell Stem Cell. 2012 Nov 02; 11(5):607-14. Plath K, Srivastava D, Alvarez-Buylla A, Tanaka EM, Kriegstein AR. PMID: 23122288.
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    64. The roles of the reprogramming factors Oct4, Sox2 and Klf4 in resetting the somatic cell epigenome during induced pluripotent stem cell generation. Genome Biol. 2012 Oct 22; 13(10):251. Schmidt R, Plath K. PMID: 23088445; PMCID: PMC3491406.
      View in: PubMed   Mentions: 37     Fields:    Translation:HumansAnimalsCells
    65. Cell reprogramming. Curr Opin Genet Dev. 2012 Oct; 22(5):401-2. Pera MF, Plath K. PMID: 23084811.
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    66. Pluripotency re-centered around Esrrb. EMBO J. 2012 Nov 14; 31(22):4255-7. Papp B, Plath K. PMID: 23064149; PMCID: PMC3501223.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    67. Characterization and therapeutic potential of induced pluripotent stem cell-derived cardiovascular progenitor cells. PLoS One. 2012; 7(10):e45603. Nsair A, Schenke-Layland K, Van Handel B, Evseenko D, Kahn M, Zhao P, Mendelis J, Heydarkhan S, Awaji O, Vottler M, Geist S, Chyu J, Gago-Lopez N, Crooks GM, Plath K, Goldhaber J, Mikkola HK, MacLellan WR. PMID: 23056209; PMCID: PMC3467279.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    68. Concise review: Pluripotency and the transcriptional inactivation of the female Mammalian X chromosome. Stem Cells. 2012 Jan; 30(1):48-54. Minkovsky A, Patel S, Plath K. PMID: 21997775; PMCID: PMC3251695.
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    69. From skin biopsy to neurons through a pluripotent intermediate under Good Manufacturing Practice protocols. Stem Cells Transl Med. 2012 Jan; 1(1):36-43. Karumbayaram S, Lee P, Azghadi SF, Cooper AR, Patterson M, Kohn DB, Pyle A, Clark A, Byrne J, Zack JA, Plath K, Lowry WE. PMID: 23197638; PMCID: PMC3727693.
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    70. Derivation of new human embryonic stem cell lines reveals rapid epigenetic progression in vitro that can be prevented by chemical modification of chromatin. Hum Mol Genet. 2012 Feb 15; 21(4):751-64. Diaz Perez SV, Kim R, Li Z, Marquez VE, Patel S, Plath K, Clark AT. PMID: 22058289; PMCID: PMC3263987.
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    71. Mediator coordinates PIC assembly with recruitment of CHD1. Genes Dev. 2011 Oct 15; 25(20):2198-209. Lin JJ, Lehmann LW, Bonora G, Sridharan R, Vashisht AA, Tran N, Plath K, Wohlschlegel JA, Carey M. PMID: 21979373; PMCID: PMC3205589.
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    72. Highly efficient large-scale lentiviral vector concentration by tandem tangential flow filtration. J Virol Methods. 2011 Oct; 177(1):1-9. Cooper AR, Patel S, Senadheera S, Plath K, Kohn DB, Hollis RP. PMID: 21784103; PMCID: PMC4276401.
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    73. Small RNAs loom large during reprogramming. Cell Stem Cell. 2011 Jun 03; 8(6):599-601. Sridharan R, Plath K. PMID: 21624799; PMCID: PMC3612285.
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    74. Progress in understanding reprogramming to the induced pluripotent state. Nat Rev Genet. 2011 Apr; 12(4):253-65. Plath K, Lowry WE. PMID: 21415849; PMCID: PMC3273493.
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    75. Mechanistic insights into reprogramming to induced pluripotency. J Cell Physiol. 2011 Apr; 226(4):868-78. Ho R, Chronis C, Plath K. PMID: 20945378; PMCID: PMC3077549.
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    76. Reprogramming to pluripotency: stepwise resetting of the epigenetic landscape. Cell Res. 2011 Mar; 21(3):486-501. Papp B, Plath K. PMID: 21321600; PMCID: PMC3193418.
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    77. Identification and classification of chromosomal aberrations in human induced pluripotent stem cells. Cell Stem Cell. 2010 Oct 08; 7(4):521-31. Mayshar Y, Ben-David U, Lavon N, Biancotti JC, Yakir B, Clark AT, Plath K, Lowry WE, Benvenisty N. PMID: 20887957.
      View in: PubMed   Mentions: 329     Fields:    Translation:HumansCells
    78. Identification of context-dependent motifs by contrasting ChIP binding data. Bioinformatics. 2010 Nov 15; 26(22):2826-32. Mason MJ, Plath K, Zhou Q. PMID: 20870645; PMCID: PMC2971577.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    79. Female human iPSCs retain an inactive X chromosome. Cell Stem Cell. 2010 Sep 03; 7(3):329-42. Tchieu J, Kuoy E, Chin MH, Trinh H, Patterson M, Sherman SP, Aimiuwu O, Lindgren A, Hakimian S, Zack JA, Clark AT, Pyle AD, Lowry WE, Plath K. PMID: 20727844; PMCID: PMC2935700.
      View in: PubMed   Mentions: 125     Fields:    Translation:HumansCells
    80. Molecular analyses of human induced pluripotent stem cells and embryonic stem cells. Cell Stem Cell. 2010 Aug 06; 7(2):263-9. Chin MH, Pellegrini M, Plath K, Lowry WE. PMID: 20682452; PMCID: PMC3276111.
      View in: PubMed   Mentions: 70     Fields:    Translation:HumansCells
    81. Transcriptional competence and the active marking of tissue-specific enhancers by defined transcription factors in embryonic and induced pluripotent stem cells. Genes Dev. 2009 Dec 15; 23(24):2824-38. Xu J, Watts JA, Pope SD, Gadue P, Kamps M, Plath K, Zaret KS, Smale ST. PMID: 20008934; PMCID: PMC2800090.
      View in: PubMed   Mentions: 93     Fields:    Translation:AnimalsCells
    82. Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis. Genome Res. 2010 Feb; 20(2):155-69. Hiratani I, Ryba T, Itoh M, Rathjen J, Kulik M, Papp B, Fussner E, Bazett-Jones DP, Plath K, Dalton S, Rathjen PD, Gilbert DM. PMID: 19952138; PMCID: PMC2813472.
      View in: PubMed   Mentions: 154     Fields:    Translation:AnimalsCells
    83. Signed weighted gene co-expression network analysis of transcriptional regulation in murine embryonic stem cells. BMC Genomics. 2009 Jul 20; 10:327. Mason MJ, Fan G, Plath K, Zhou Q, Horvath S. PMID: 19619308; PMCID: PMC2727539.
      View in: PubMed   Mentions: 95     Fields:    Translation:AnimalsCells
    84. Chd1 regulates open chromatin and pluripotency of embryonic stem cells. Nature. 2009 Aug 13; 460(7257):863-8. Gaspar-Maia A, Alajem A, Polesso F, Sridharan R, Mason MJ, Heidersbach A, Ramalho-Santos J, McManus MT, Plath K, Meshorer E, Ramalho-Santos M. PMID: 19587682; PMCID: PMC3891576.
      View in: PubMed   Mentions: 249     Fields:    Translation:AnimalsCells
    85. Induced pluripotent stem cells and embryonic stem cells are distinguished by gene expression signatures. Cell Stem Cell. 2009 Jul 02; 5(1):111-23. Chin MH, Mason MJ, Xie W, Volinia S, Singer M, Peterson C, Ambartsumyan G, Aimiuwu O, Richter L, Zhang J, Khvorostov I, Ott V, Grunstein M, Lavon N, Benvenisty N, Croce CM, Clark AT, Baxter T, Pyle AD, Teitell MA, Pelegrini M, Plath K, Lowry WE. PMID: 19570518; PMCID: PMC3448781.
      View in: PubMed   Mentions: 444     Fields:    Translation:HumansAnimalsCells
    86. Derivation of primordial germ cells from human embryonic and induced pluripotent stem cells is significantly improved by coculture with human fetal gonadal cells. Stem Cells. 2009 Apr; 27(4):783-95. Park TS, Galic Z, Conway AE, Lindgren A, van Handel BJ, Magnusson M, Richter L, Teitell MA, Mikkola HK, Lowry WE, Plath K, Clark AT. PMID: 19350678; PMCID: PMC4357362.
      View in: PubMed   Mentions: 83     Fields:    Translation:HumansCells
    87. Directed differentiation of human-induced pluripotent stem cells generates active motor neurons. Stem Cells. 2009 Apr; 27(4):806-11. Karumbayaram S, Novitch BG, Patterson M, Umbach JA, Richter L, Lindgren A, Conway AE, Clark AT, Goldman SA, Plath K, Wiedau-Pazos M, Kornblum HI, Lowry WE. PMID: 19350680; PMCID: PMC2895909.
      View in: PubMed   Mentions: 133     Fields:    Translation:HumansCells
    88. Broader implications of defining standards for the pluripotency of iPSCs. Cell Stem Cell. 2009 Mar 06; 4(3):200-1; author reply 202. Daley GQ, Lensch MW, Jaenisch R, Meissner A, Plath K, Yamanaka S. PMID: 19265657.
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    89. Histone h3 lysine 56 acetylation is linked to the core transcriptional network in human embryonic stem cells. Mol Cell. 2009 Feb 27; 33(4):417-27. Xie W, Song C, Young NL, Sperling AS, Xu F, Sridharan R, Conway AE, Garcia BA, Plath K, Clark AT, Grunstein M. PMID: 19250903; PMCID: PMC2671231.
      View in: PubMed   Mentions: 107     Fields:    Translation:HumansAnimalsCells
    90. Post-translational regulation of Oct4 transcriptional activity. PLoS One. 2009; 4(2):e4467. Saxe JP, Tomilin A, Schöler HR, Plath K, Huang J. PMID: 19221599; PMCID: PMC2637973.
      View in: PubMed   Mentions: 58     Fields:    Translation:AnimalsCells
    91. Epigenetic reprogramming and induced pluripotency. Development. 2009 Feb; 136(4):509-23. Hochedlinger K, Plath K. PMID: 19168672; PMCID: PMC2685952.
      View in: PubMed   Mentions: 223     Fields:    Translation:HumansAnimalsCells
    92. Role of the murine reprogramming factors in the induction of pluripotency. Cell. 2009 Jan 23; 136(2):364-77. Sridharan R, Tchieu J, Mason MJ, Yachechko R, Kuoy E, Horvath S, Zhou Q, Plath K. PMID: 19167336; PMCID: PMC3273494.
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    93. X chromosome inactivation in the absence of Dicer. Proc Natl Acad Sci U S A. 2009 Jan 27; 106(4):1122-7. Kanellopoulou C, Muljo SA, Dimitrov SD, Chen X, Colin C, Plath K, Livingston DM. PMID: 19164542; PMCID: PMC2633553.
      View in: PubMed   Mentions: 23     Fields:    Translation:AnimalsCells
    94. The many ways to make an iPS cell. Nat Biotechnol. 2008 Nov; 26(11):1246-8. Lowry WE, Plath K. PMID: 18997764.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansAnimalsCells
    95. Reprogrammed mouse fibroblasts differentiate into cells of the cardiovascular and hematopoietic lineages. Stem Cells. 2008 Jun; 26(6):1537-46. Schenke-Layland K, Rhodes KE, Angelis E, Butylkova Y, Heydarkhan-Hagvall S, Gekas C, Zhang R, Goldhaber JI, Mikkola HK, Plath K, MacLellan WR. PMID: 18450826; PMCID: PMC2873147.
      View in: PubMed   Mentions: 81     Fields:    Translation:AnimalsCells
    96. Illuminating the black box of reprogramming. Cell Stem Cell. 2008 Apr 10; 2(4):295-7. Sridharan R, Plath K. PMID: 18397745.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansAnimalsCells
    97. Directly reprogrammed fibroblasts show global epigenetic remodeling and widespread tissue contribution. Cell Stem Cell. 2007 Jun 07; 1(1):55-70. Maherali N, Sridharan R, Xie W, Utikal J, Eminli S, Arnold K, Stadtfeld M, Yachechko R, Tchieu J, Jaenisch R, Plath K, Hochedlinger K. PMID: 18371336.
      View in: PubMed   Mentions: 647     Fields:    Translation:AnimalsCells
    98. The histone domain of macroH2A1 contains several dispersed elements that are each sufficient to direct enrichment on the inactive X chromosome. J Mol Biol. 2007 Aug 03; 371(1):11-8. Nusinow DA, Sharp JA, Morris A, Salas S, Plath K, Panning B. PMID: 17570398; PMCID: PMC2701898.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansCells
    99. A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell. 2006 Apr 21; 125(2):315-26. Bernstein BE, Mikkelsen TS, Xie X, Kamal M, Huebert DJ, Cuff J, Fry B, Meissner A, Wernig M, Plath K, Jaenisch R, Wagschal A, Feil R, Schreiber SL, Lander ES. PMID: 16630819.
      View in: PubMed   Mentions: 2319     Fields:    Translation:AnimalsCells
    100. Polycomb complexes repress developmental regulators in murine embryonic stem cells. Nature. 2006 May 18; 441(7091):349-53. Boyer LA, Plath K, Zeitlinger J, Brambrink T, Medeiros LA, Lee TI, Levine SS, Wernig M, Tajonar A, Ray MK, Bell GW, Otte AP, Vidal M, Gifford DK, Young RA, Jaenisch R. PMID: 16625203.
      View in: PubMed   Mentions: 1146     Fields:    Translation:AnimalsCells
    101. Efficient method to generate single-copy transgenic mice by site-specific integration in embryonic stem cells. Genesis. 2006 Jan; 44(1):23-8. Beard C, Hochedlinger K, Plath K, Wutz A, Jaenisch R. PMID: 16400644.
      View in: PubMed   Mentions: 246     Fields:    Translation:AnimalsCells
    102. Mapping post-translational modifications of the histone variant MacroH2A1 using tandem mass spectrometry. Mol Cell Proteomics. 2006 Jan; 5(1):194-203. Chu F, Nusinow DA, Chalkley RJ, Plath K, Panning B, Burlingame AL. PMID: 16210244.
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    103. Developmental regulation of Suz 12 localization. Chromosoma. 2005 Aug; 114(3):183-92. de la Cruz CC, Fang J, Plath K, Worringer KA, Nusinow DA, Zhang Y, Panning B. PMID: 15986205.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansAnimalsCells
    104. Developmentally regulated alterations in Polycomb repressive complex 1 proteins on the inactive X chromosome. J Cell Biol. 2004 Dec 20; 167(6):1025-35. Plath K, Talbot D, Hamer KM, Otte AP, Yang TP, Jaenisch R, Panning B. PMID: 15596546; PMCID: PMC2172612.
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    105. Interactions between Sec complex and prepro-alpha-factor during posttranslational protein transport into the endoplasmic reticulum. Mol Biol Cell. 2004 Jan; 15(1):1-10. Plath K, Wilkinson BM, Stirling CJ, Rapoport TA. PMID: 14617809; PMCID: PMC307522.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    106. Role of histone H3 lysine 27 methylation in X inactivation. Science. 2003 Apr 04; 300(5616):131-5. Plath K, Fang J, Mlynarczyk-Evans SK, Cao R, Worringer KA, Wang H, de la Cruz CC, Otte AP, Panning B, Zhang Y. PMID: 12649488.
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    107. Xist RNA and the mechanism of X chromosome inactivation. Annu Rev Genet. 2002; 36:233-78. Plath K, Mlynarczyk-Evans S, Nusinow DA, Panning B. PMID: 12429693.
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