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Vondriska Thomas

Title(s)Professor, Anesthesiology
Phone(310) 206-4072
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    Collapse Research 
    Collapse Research Activities and Funding
    Novel Mechanisms of LncRNA Mediated Epigenetic Regulation in Cardiac Hypertrophy
    NIH/NHLBI R01HL143058Jul 1, 2018 - Jun 30, 2022
    Role: Co-Principal Investigator
    Epigenomic Mechanisms of Heart Failure
    NIH/NHLBI R01HL129639Aug 4, 2015 - May 31, 2019
    Role: Principal Investigator
    Systems Analysis of Cardiac Chromatin Structure
    NIH/NHLBI R01HL115238Jul 24, 2012 - Jun 30, 2017
    Role: Principal Investigator
    Dynamics of Cardiac Nuclei in Heart Disease
    NIH/NHLBI R01HL105699Jan 1, 2011 - May 31, 2021
    Role: Principal Investigator
    Phenotypic Continuum Between Cardiac Growth and Protection
    NIH/NHLBI R21HL096041May 1, 2009 - Apr 30, 2012
    Role: Principal Investigator
    Novel mechanisms of tyrosine kinase signaling in heart
    NIH/NHLBI R01HL087132Jan 15, 2007 - Dec 31, 2012
    Role: Principal Investigator
    Purchase of Proteomic Mass Spectrometry Instrumentation
    NIH/NCRR S10RR022371Apr 1, 2006 - Mar 31, 2007
    Role: Principal Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Foo RS, Anene-Nzelu CG, Rosa-Garrido M, Vondriska TM. Dissecting Chromatin Architecture for Novel Cardiovascular Disease Targets. Circulation. 2019 Aug 06; 140(6):446-448. PMID: 31381426.
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    2. Mason RJ, Vondriska TM. Chromatin Is the Same in a Relative Way (But You're Older). Circ Res. 2019 Jul 05; 125(2):209-211. PMID: 31268855.
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    3. Karbassi E, Rosa-Garrido M, Chapski DJ, Wu Y, Ren S, Wang Y, Stefani E, Vondriska TM. Direct visualization of cardiac transcription factories reveals regulatory principles of nuclear architecture during pathological remodeling. J Mol Cell Cardiol. 2019 Mar; 128:198-211. PMID: 30742811.
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    4. Chapski DJ, Rosa-Garrido M, Hua N, Alber F, Vondriska TM. Spatial Principles of Chromatin Architecture Associated With Organ-Specific Gene Regulation. Front Cardiovasc Med. 2018; 5:186. PMID: 30697540.
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    5. McKinsey TA, Vondriska TM, Wang Y. Epigenomic regulation of heart failure: integrating histone marks, long noncoding RNAs, and chromatin architecture. F1000Res. 2018; 7. PMID: 30416708.
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    6. Rosa-Garrido M, Chapski DJ, Vondriska TM. Epigenomes in Cardiovascular Disease. Circ Res. 2018 05 25; 122(11):1586-1607. PMID: 29798902.
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    7. Rau CD, Vondriska TM. DNA Methylation and Human Heart Failure: Mechanisms or Prognostics. Circulation. 2017 10 17; 136(16):1545-1547. PMID: 29038208.
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    8. Rosa-Garrido M, Chapski DJ, Schmitt AD, Kimball TH, Karbassi E, Monte E, Balderas E, Pellegrini M, Shih TT, Soehalim E, Liem D, Ping P, Galjart NJ, Ren S, Wang Y, Ren B, Vondriska TM. High-Resolution Mapping of Chromatin Conformation in Cardiac Myocytes Reveals Structural Remodeling of the Epigenome in Heart Failure. Circulation. 2017 Oct 24; 136(17):1613-1625. PMID: 28802249.
      View in: PubMed
    9. Chai H, Diaz-Castro B, Shigetomi E, Monte E, Octeau JC, Yu X, Cohn W, Rajendran PS, Vondriska TM, Whitelegge JP, Coppola G, Khakh BS. Neural Circuit-Specialized Astrocytes: Transcriptomic, Proteomic, Morphological, and Functional Evidence. Neuron. 2017 Aug 02; 95(3):531-549.e9. PMID: 28712653.
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    10. Monte E, Fischer MA, Vondriska TM. Epigenomic Disruption of Cardiovascular Care: What It Will Take. Circ Res. 2017 05 26; 120(11):1692-1693. PMID: 28546346.
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    11. Wang JJ, Aboulhosn JA, Hofer IS, Mahajan A, Wang Y, Vondriska TM. Operationalizing Precision Cardiovascular Medicine: Three Innovations. Circ Res. 2016 10 14; 119(9):984-987. PMID: 27737942.
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    12. Franklin S, Kimball T, Rasmussen TL, Rosa-Garrido M, Chen H, Tran T, Miller MR, Gray R, Jiang S, Ren S, Wang Y, Tucker HO, Vondriska TM. The chromatin-binding protein Smyd1 restricts adult mammalian heart growth. Am J Physiol Heart Circ Physiol. 2016 11 01; 311(5):H1234-H1247. PMID: 27663768.
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    13. Monte E, Rosa-Garrido M, Vondriska TM, Wang J. Undiscovered Physiology of Transcript and Protein Networks. Compr Physiol. 2016 09 15; 6(4):1851-1872. PMID: 27783861.
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    14. Wang Z, Zhang XJ, Ji YX, Zhang P, Deng KQ, Gong J, Ren S, Wang X, Chen I, Wang H, Gao C, Yokota T, Ang YS, Li S, Cass A, Vondriska TM, Li G, Deb A, Srivastava D, Yang HT, Xiao X, Li H, Wang Y. The long noncoding RNA Chaer defines an epigenetic checkpoint in cardiac hypertrophy. Nat Med. 2016 10; 22(10):1131-1139. PMID: 27618650.
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    15. Karbassi E, Monte E, Chapski DJ, Lopez R, Rosa Garrido M, Kim J, Wisniewski N, Rau CD, Wang JJ, Weiss JN, Wang Y, Lusis AJ, Vondriska TM. Relationship of disease-associated gene expression to cardiac phenotype is buffered by genetic diversity and chromatin regulation. Physiol Genomics. 2016 08 01; 48(8):601-15. PMID: 27287924.
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    16. Monte E, Rosa-Garrido M, Karbassi E, Chen H, Lopez R, Rau CD, Wang J, Nelson SF, Wu Y, Stefani E, Lusis AJ, Wang Y, Kurdistani SK, Franklin S, Vondriska TM. Reciprocal Regulation of the Cardiac Epigenome by Chromatin Structural Proteins Hmgb and Ctcf: IMPLICATIONS FOR TRANSCRIPTIONAL REGULATION. J Biol Chem. 2016 07 22; 291(30):15428-46. PMID: 27226577.
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    17. Chen H, Orozco LD, Wang J, Rau CD, Rubbi L, Ren S, Wang Y, Pellegrini M, Lusis AJ, Vondriska TM. DNA Methylation Indicates Susceptibility to Isoproterenol-Induced Cardiac Pathology and Is Associated With Chromatin States. Circ Res. 2016 Mar 04; 118(5):786-97. PMID: 26838786.
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    18. Gao C, Ren S, Lee JH, Qiu J, Chapski DJ, Rau CD, Zhou Y, Abdellatif M, Nakano A, Vondriska TM, Xiao X, Fu XD, Chen JN, Wang Y. RBFox1-mediated RNA splicing regulates cardiac hypertrophy and heart failure. J Clin Invest. 2016 Jan; 126(1):195-206. PMID: 26619120.
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    19. Monte E, Lopez R, Vondriska TM. Not low hanging but still sweet: Metabolic proteomes in cardiovascular disease. J Mol Cell Cardiol. 2016 Jan; 90:70-3. PMID: 26611885.
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    20. Vondriska TM. Transcriptome and proteome dynamics in the cardiovascular system. J Physiol. 2015 Apr 15; 593(8):1773-5. PMID: 25871561.
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    21. Shimizu H, Schredelseker J, Huang J, Lu K, Naghdi S, Lu F, Franklin S, Fiji HD, Wang K, Zhu H, Tian C, Lin B, Nakano H, Ehrlich A, Nakai J, Stieg AZ, Gimzewski JK, Nakano A, Goldhaber JI, Vondriska TM, Hajnóczky G, Kwon O, Chen JN. Mitochondrial Ca(2+) uptake by the voltage-dependent anion channel 2 regulates cardiac rhythmicity. Elife. 2015 Jan 15; 4. PMID: 25588501.
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    22. Ren S, Lu G, Ota A, Zhou ZH, Vondriska TM, Lane TF, Wang Y. IRE1 phosphatase PP2Ce regulates adaptive ER stress response in the postpartum mammary gland. PLoS One. 2014; 9(11):e111606. PMID: 25369058.
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    23. Ubil E, Duan J, Pillai IC, Rosa-Garrido M, Wu Y, Bargiacchi F, Lu Y, Stanbouly S, Huang J, Rojas M, Vondriska TM, Stefani E, Deb A. Mesenchymal-endothelial transition contributes to cardiac neovascularization. Nature. 2014 Oct 30; 514(7524):585-90. PMID: 25317562.
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    24. Vondriska TM, Jensen ON. Proteomics in chromatin biology and epigenetics. Proteomics. 2014 Oct; 14(19):2105-8. PMID: 25274254.
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    25. Karbassi E, Vondriska TM. How the proteome packages the genome for cardiovascular development. Proteomics. 2014 Oct; 14(19):2115-26. PMID: 25074278.
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    26. Monte E, Vondriska TM. Epigenomes: the missing heritability in human cardiovascular disease? Proteomics Clin Appl. 2014 Aug; 8(7-8):480-7. PMID: 24957631.
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    27. Chapski DJ, Monte E, Vondriska TM. Positive feedback in cardioprotection: can more mechanism lead to translation? Circ Res. 2014 Apr 11; 114(8):1225-7. PMID: 24723653.
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    28. Monte E, Mouillesseaux K, Chen H, Kimball T, Ren S, Wang Y, Chen JN, Vondriska TM, Franklin S. Systems proteomics of cardiac chromatin identifies nucleolin as a regulator of growth and cellular plasticity in cardiomyocytes. Am J Physiol Heart Circ Physiol. 2013 Dec 01; 305(11):H1624-38. PMID: 24077883.
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    29. Lu G, Ota A, Ren S, Franklin S, Rau CD, Ping P, Lane TF, Zhou ZH, Reue K, Lusis AJ, Vondriska T, Wang Y. PPM1l encodes an inositol requiring-protein 1 (IRE1) specific phosphatase that regulates the functional outcome of the ER stress response. Mol Metab. 2013; 2(4):405-16. PMID: 24327956.
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    30. Rosa-Garrido M, Karbassi E, Monte E, Vondriska TM. Regulation of chromatin structure in the cardiovascular system. Circ J. 2013; 77(6):1389-98. PMID: 23575346.
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    31. Chen H, Monte E, Vondriska TM, Franklin S. Systems proteomics of healthy and diseased chromatin. Methods Mol Biol. 2013; 1005:77-93. PMID: 23606250.
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    32. Monte E, Chen H, Kolmakova M, Parvatiyar M, Vondriska TM, Franklin S. Quantitative analysis of chromatin proteomes in disease. J Vis Exp. 2012 Dec 28; (70). PMID: 23299252.
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    33. Chen H, Monte E, Parvatiyar MS, Rosa-Garrido M, Franklin S, Vondriska TM. Structural considerations for chromatin state models with transcription as a functional readout. FEBS Lett. 2012 Oct 19; 586(20):3548-54. PMID: 22940112.
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    34. Mitchell-Jordan S, Chen H, Franklin S, Stefani E, Bentolila LA, Vondriska TM. Features of endogenous cardiomyocyte chromatin revealed by super-resolution STED microscopy. J Mol Cell Cardiol. 2012 Oct; 53(4):552-8. PMID: 22846883.
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    35. Picha B, Thompson M, Vondriska TM. Preclinical trials: Keep 'reproducibility' in context. Nature. 2012 May 02; 485(7396):41. PMID: 22552083.
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    36. Franklin S, Chen H, Mitchell-Jordan S, Ren S, Wang Y, Vondriska TM. Quantitative analysis of the chromatin proteome in disease reveals remodeling principles and identifies high mobility group protein B2 as a regulator of hypertrophic growth. Mol Cell Proteomics. 2012 Jun; 11(6):M111.014258. PMID: 22270000.
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    37. Franklin S, Vondriska TM. Genomes, proteomes, and the central dogma. Circ Cardiovasc Genet. 2011 Oct; 4(5):576. PMID: 22010165.
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    38. Li Y, Franklin S, Zhang MJ, Vondriska TM. Highly efficient purification of protein complexes from mammalian cells using a novel streptavidin-binding peptide and hexahistidine tandem tag system: application to Bruton's tyrosine kinase. Protein Sci. 2011 Jan; 20(1):140-9. PMID: 21080425.
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    39. Franklin S, Zhang MJ, Chen H, Paulsson AK, Mitchell-Jordan SA, Li Y, Ping P, Vondriska TM. Specialized compartments of cardiac nuclei exhibit distinct proteomic anatomy. Mol Cell Proteomics. 2011 Jan; 10(1):M110.000703. PMID: 20807835.
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    40. Zhang MJ, Franklin S, Li Y, Wang S, Ru X, Mitchell-Jordan SA, Mano H, Stefani E, Ping P, Vondriska TM. Stress signaling by Tec tyrosine kinase in the ischemic myocardium. Am J Physiol Heart Circ Physiol. 2010 Sep; 299(3):H713-22. PMID: 20543088.
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    41. Paulsson AK, Franklin S, Mitchell-Jordan SA, Ren S, Wang Y, Vondriska TM. Post-translational regulation of calsarcin-1 during pressure overload-induced cardiac hypertrophy. J Mol Cell Cardiol. 2010 Jun; 48(6):1206-14. PMID: 20170660.
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    42. Lomenick B, Hao R, Jonai N, Chin RM, Aghajan M, Warburton S, Wang J, Wu RP, Gomez F, Loo JA, Wohlschlegel JA, Vondriska TM, Pelletier J, Herschman HR, Clardy J, Clarke CF, Huang J. Target identification using drug affinity responsive target stability (DARTS). Proc Natl Acad Sci U S A. 2009 Dec 22; 106(51):21984-9. PMID: 19995983.
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    43. Lu G, Sun H, She P, Youn JY, Warburton S, Ping P, Vondriska TM, Cai H, Lynch CJ, Wang Y. Protein phosphatase 2Cm is a critical regulator of branched-chain amino acid catabolism in mice and cultured cells. J Clin Invest. 2009 Jun; 119(6):1678-87. PMID: 19411760.
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    44. Singh H, Warburton S, Vondriska TM, Khakh BS. Proteomics to identify proteins interacting with P2X2 ligand-gated cation channels. J Vis Exp. 2009 May 18; (27). PMID: 19455095.
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    45. Qu Z, Vondriska TM. The effects of cascade length, kinetics and feedback loops on biological signal transduction dynamics in a simplified cascade model. Phys Biol. 2009 Feb 25; 6(1):016007. PMID: 19242047.
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    46. Vondriska TM, Wang Y. A new (heat) shocking player in cardiac hypertrophy. Circ Res. 2008 Nov 21; 103(11):1194-6. PMID: 19028916.
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    47. Mitchell-Jordan SA, Holopainen T, Ren S, Wang S, Warburton S, Zhang MJ, Alitalo K, Wang Y, Vondriska TM. Loss of Bmx nonreceptor tyrosine kinase prevents pressure overload-induced cardiac hypertrophy. Circ Res. 2008 Dec 05; 103(12):1359-62. PMID: 18988895.
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    48. Yang L, Vondriska TM, Han Z, Maclellan WR, Weiss JN, Qu Z. Deducing topology of protein-protein interaction networks from experimentally measured sub-networks. BMC Bioinformatics. 2008 Jul 03; 9:301. PMID: 18598366.
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    49. Maclellan WR, Wang Y, Vondriska TM, Weiss JN, Ping P. Proteomic insights into cardiac cell death and survival. Proteomics Clin Appl. 2008 Jun; 2(6):837-44. PMID: 21136883.
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    50. Zhang J, Liem DA, Mueller M, Wang Y, Zong C, Deng N, Vondriska TM, Korge P, Drews O, Maclellan WR, Honda H, Weiss JN, Apweiler R, Ping P. Altered proteome biology of cardiac mitochondria under stress conditions. J Proteome Res. 2008 Jun; 7(6):2204-14. PMID: 18484766.
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    51. Wang GW, Guo Y, Vondriska TM, Zhang J, Zhang S, Tsai LL, Zong NC, Bolli R, Bhatnagar A, Prabhu SD. Acrolein consumption exacerbates myocardial ischemic injury and blocks nitric oxide-induced PKCepsilon signaling and cardioprotection. J Mol Cell Cardiol. 2008 Jun; 44(6):1016-22. PMID: 18468618.
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    52. Zhang J, Li X, Mueller M, Wang Y, Zong C, Deng N, Vondriska TM, Liem DA, Yang JI, Korge P, Honda H, Weiss JN, Apweiler R, Ping P. Systematic characterization of the murine mitochondrial proteome using functionally validated cardiac mitochondria. Proteomics. 2008 Apr; 8(8):1564-75. PMID: 18348319.
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    53. Warburton S, White MY, Van Eyk JE, Cotter RJ, Ping P, Dunn MJ, Vondriska TM. Cardiovascular Initiative of the Human Proteome Organisation, 5th Workshop October 2007, Seoul, Korea. Proteomics. 2008 Mar; 8(5):924-6. PMID: 18240139.
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    54. Gugiu BG, Mouillesseaux K, Duong V, Herzog T, Hekimian A, Koroniak L, Vondriska TM, Watson AD. Protein targets of oxidized phospholipids in endothelial cells. J Lipid Res. 2008 Mar; 49(3):510-20. PMID: 18071189.
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    55. Taylor CF, Paton NW, Lilley KS, Binz PA, Julian RK, Jones AR, Zhu W, Apweiler R, Aebersold R, Deutsch EW, Dunn MJ, Heck AJ, Leitner A, Macht M, Mann M, Martens L, Neubert TA, Patterson SD, Ping P, Seymour SL, Souda P, Tsugita A, Vandekerckhove J, Vondriska TM, Whitelegge JP, Wilkins MR, Xenarios I, Yates JR, Hermjakob H. The minimum information about a proteomics experiment (MIAPE). Nat Biotechnol. 2007 Aug; 25(8):887-93. PMID: 17687369.
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    56. Han Z, Vondriska TM, Yang L, Robb MacLellan W, Weiss JN, Qu Z. Signal transduction network motifs and biological memory. J Theor Biol. 2007 Jun 21; 246(4):755-61. PMID: 17374382.
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    57. Berhane BT, Zong C, Liem DA, Huang A, Le S, Edmondson RD, Jones RC, Qiao X, Whitelegge JP, Ping P, Vondriska TM. Cardiovascular-related proteins identified in human plasma by the HUPO Plasma Proteome Project pilot phase. Proteomics. 2005 Aug; 5(13):3520-30. PMID: 16052623.
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    58. Ping P, Vondriska TM, Creighton CJ, Gandhi TK, Yang Z, Menon R, Kwon MS, Cho SY, Drwal G, Kellmann M, Peri S, Suresh S, Gronborg M, Molina H, Chaerkady R, Rekha B, Shet AS, Gerszten RE, Wu H, Raftery M, Wasinger V, Schulz-Knappe P, Hanash SM, Paik YK, Hancock WS, States DJ, Omenn GS, Pandey A. A functional annotation of subproteomes in human plasma. Proteomics. 2005 Aug; 5(13):3506-19. PMID: 16104058.
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    59. Gomes AV, Zong C, Edmondson RD, Berhane BT, Wang GW, Le S, Young G, Zhang J, Vondriska TM, Whitelegge JP, Jones RC, Joshua IG, Thyparambil S, Pantaleon D, Qiao J, Loo J, Ping P. The murine cardiac 26S proteasome: an organelle awaiting exploration. Ann N Y Acad Sci. 2005 Jun; 1047:197-207. PMID: 16093497.
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    60. Zhang J, Baines CP, Zong C, Cardwell EM, Wang G, Vondriska TM, Ping P. Functional proteomic analysis of a three-tier PKCepsilon-Akt-eNOS signaling module in cardiac protection. Am J Physiol Heart Circ Physiol. 2005 Feb; 288(2):H954-61. PMID: 15528226.
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    61. Wang G, Liem DA, Vondriska TM, Honda HM, Korge P, Pantaleon DM, Qiao X, Wang Y, Weiss JN, Ping P. Nitric oxide donors protect murine myocardium against infarction via modulation of mitochondrial permeability transition. Am J Physiol Heart Circ Physiol. 2005 Mar; 288(3):H1290-5. PMID: 15528225.
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    62. MacLellan WR, Ping P, Vondriska T. Heart disease leaves its mark: proteomics-based biosignatures in acute coronary syndromes. J Am Coll Cardiol. 2004 Oct 19; 44(8):1584-6. PMID: 15489089.
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    63. Vondriska TM, Pass JM, Ping P. Scaffold proteins and assembly of multiprotein signaling complexes. J Mol Cell Cardiol. 2004 Aug; 37(2):391-7. PMID: 15276009.
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    64. Zhang J, Ping P, Wang GW, Lu M, Pantaleon D, Tang XL, Bolli R, Vondriska TM. Bmx, a member of the Tec family of nonreceptor tyrosine kinases, is a novel participant in pharmacological cardioprotection. Am J Physiol Heart Circ Physiol. 2004 Nov; 287(5):H2364-6. PMID: 15191890.
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    65. Vondriska TM, Ping P. Multiprotein signaling complexes and regulation of cardiac phenotype. J Mol Cell Cardiol. 2003 Sep; 35(9):1027-33. PMID: 12967625.
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    66. Zhang J, Ping P, Vondriska TM, Tang XL, Wang GW, Cardwell EM, Bolli R. Cardioprotection involves activation of NF-kappa B via PKC-dependent tyrosine and serine phosphorylation of I kappa B-alpha. Am J Physiol Heart Circ Physiol. 2003 Oct; 285(4):H1753-8. PMID: 12829431.
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    67. Pass JM, Zhang J, Vondriska TM, Ping P. Functional proteomic analysis of the protein kinase C signaling system. Methods Mol Biol. 2003; 233:369-85. PMID: 12840523.
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    68. Ping P, Baines CP, Gu Y, Prabhu SD, Zhang J, Tsai LL, Cardwell E, Zong NC, Vondriska TM, Korge P, Bhatnagar A, Wang GW. Cardiac toxic effects of trans-2-hexenal are mediated by induction of cardiomyocyte apoptotic pathways. Cardiovasc Toxicol. 2003; 3(4):341-51. PMID: 14734831.
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    69. Tang XL, Kodani E, Takano H, Hill M, Shinmura K, Vondriska TM, Ping P, Bolli R. Protein tyrosine kinase signaling is necessary for NO donor-induced late preconditioning against myocardial stunning. Am J Physiol Heart Circ Physiol. 2003 Apr; 284(4):H1441-8. PMID: 12531734.
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    70. Vondriska TM, Ping P. Functional proteomics to study protection of the ischaemic myocardium. Expert Opin Ther Targets. 2002 Oct; 6(5):563-70. PMID: 12387680.
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    71. Edmondson RD, Vondriska TM, Biederman KJ, Zhang J, Jones RC, Zheng Y, Allen DL, Xiu JX, Cardwell EM, Pisano MR, Ping P. Protein kinase C epsilon signaling complexes include metabolism- and transcription/translation-related proteins: complimentary separation techniques with LC/MS/MS. Mol Cell Proteomics. 2002 Jun; 1(6):421-33. PMID: 12169683.
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    72. Song C, Vondriska TM, Wang GW, Klein JB, Cao X, Zhang J, Kang YJ, D'Souza S, Ping P. Molecular conformation dictates signaling module formation: example of PKCepsilon and Src tyrosine kinase. Am J Physiol Heart Circ Physiol. 2002 Mar; 282(3):H1166-71. PMID: 11834516.
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    73. Ping P, Song C, Zhang J, Guo Y, Cao X, Li RC, Wu W, Vondriska TM, Pass JM, Tang XL, Pierce WM, Bolli R. Formation of protein kinase C(epsilon)-Lck signaling modules confers cardioprotection. J Clin Invest. 2002 Feb; 109(4):499-507. PMID: 11854322.
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