Thomas M Vondriska

Title(s)Professor, Anesthesiology
SchoolMedicine
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    Title(s)Professor, Medicine

    Title(s)Professor, Physiology


    Collapse Research 
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    Epigenomic basis of resilience to heart failure
    NIH R21HL150667Feb 1, 2020 - Jan 31, 2022
    Role: Principal Investigator
    Small molecule therapies targeting chromatin architecture in heart failure
    NIH R01HL150225Dec 15, 2019 - Nov 30, 2023
    Role: Principal Investigator
    Novel Mechanisms of LncRNA Mediated Epigenetic Regulation in Cardiac Hypertrophy
    NIH R01HL143058Jul 1, 2018 - Jun 30, 2022
    Role: Principal Investigator
    Epigenomic Mechanisms of Heart Failure
    NIH R01HL129639Aug 4, 2015 - May 31, 2020
    Role: Principal Investigator
    Systems Analysis of Cardiac Chromatin Structure
    NIH R01HL115238Jul 24, 2012 - Jun 30, 2018
    Role: Principal Investigator
    Dynamics of Cardiac Nuclei in Heart Disease
    NIH R01HL105699Jan 1, 2011 - May 31, 2021
    Role: Principal Investigator
    Phenotypic Continuum Between Cardiac Growth and Protection
    NIH R21HL096041May 1, 2009 - Apr 30, 2012
    Role: Principal Investigator
    Novel mechanisms of tyrosine kinase signaling in heart
    NIH R01HL087132Jan 15, 2007 - Dec 31, 2012
    Role: Principal Investigator
    Purchase of Proteomic Mass Spectrometry Instrumentation
    NIH S10RR022371Apr 1, 2006 - Mar 31, 2007
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    1. Hydrogen Sulfide Deficiency and Therapeutic Targeting in Cardiometabolic HFpEF: Evidence for Synergistic Benefit with GLP-1/Glucagon Agonism. bioRxiv. 2025 Jan 24. Doiron JE, Elbatreek MH, Xia H, Yu X, Gehred ND, Gromova T, Chen J, Driver IH, Muraoka N, Jensen M, Shambhu S, Tang WHW, LaPenna KB, Sharp TE, Goodchild TT, Xian M, Xu S, Quiriarte H, Allerton TD, Zagouras A, Wilcox J, Shah SJ, Pfeilschifter J, Beck KF, Vondriska TM, Li Z, Lefer DJ. PMID: 39345440; PMCID: PMC11429683.
      View in: PubMed   Mentions:
    2. Rapid onset fibrotic remodeling and ventricular dysfunction induced by phenylephrine involve targeted reprogramming of myocyte and fibroblast transcriptomes. bioRxiv. 2024 Oct 15. Kimball TH, Gromova T, Gehred ND, Chapski DJ, Wang K, Vaseghi M, Fischer MA, Lefer DJ, Vondriska TM. PMID: 39464022; PMCID: PMC11507669.
      View in: PubMed   Mentions:
    3. "Circulating Inflammation" and the Plasma Proteome in Heart Failure With Preserved Ejection Fraction. JACC Basic Transl Sci. 2024 Sep; 9(9):1085-1087. Vondriska TM, Lefer DJ. PMID: 39444925; PMCID: PMC11494386.
      View in: PubMed   Mentions:
    4. Novel Insights into Post-Myocardial Infarction Cardiac Remodeling through Algorithmic Detection of Cell-Type Composition Shifts. bioRxiv. 2024 Aug 10. Gural B, Kirkland L, Hockett A, Sandroni P, Zhang J, Rosa-Garrido M, Swift SK, Chapski D, Flinn MA, O'Meara CC, Vondriska TM, Patterson M, Jensen BC, Rau CD. PMID: 39149394; PMCID: PMC11326268.
      View in: PubMed   Mentions:
    5. Novel Insights into Post-Myocardial Infarction Cardiac Remodeling through Algorithmic Detection of Cell-Type Composition Shifts. bioRxiv. 2024 Aug 10. Gural B, Kirkland L, Hockett A, Sandroni P, Zhang J, Rosa-Garrido M, Swift SK, Chapski D, Flinn MA, O'Meara CC, Vondriska TM, Patterson M, Jensen BC, Rau CD. PMID: 39149394; PMCID: PMC11326268.
      View in: PubMed   Mentions:
    6. Nuclear ATP-citrate lyase regulates chromatin-dependent activation and maintenance of the myofibroblast gene program. Nat Cardiovasc Res. 2024 Jul; 3(7):869-882. Lazaropoulos MP, Gibb AA, Chapski DJ, Nair AA, Reiter AN, Roy R, Eaton DM, Bedi KC, Margulies KB, Wellen KE, Estarás C, Vondriska TM, Elrod JW. PMID: 39196175; PMCID: PMC11358007.
      View in: PubMed   Mentions: 1  Translation:AnimalsCells
    7. Nuclear ATP-citrate lyase regulates chromatin-dependent activation and maintenance of the myofibroblast gene program. Nat Cardiovasc Res. 2024 Jul; 3(7):869-882. Lazaropoulos MP, Gibb AA, Chapski DJ, Nair AA, Reiter AN, Roy R, Eaton DM, Bedi KC, Margulies KB, Wellen KE, Estarás C, Vondriska TM, Elrod JW. PMID: 39196175; PMCID: PMC11358007.
      View in: PubMed   Mentions: 1  Translation:AnimalsCells
    8. Decreased Left Atrial Cardiomyocyte Fibroblast Growth Factor 13 Expression Increases Vulnerability to Postoperative Atrial Fibrillation in Humans. J Am Heart Assoc. 2024 Jun 18; 13(12):e034896. Fischer MA, Arrieta A, Angelini M, Soehalim E, Chapski DJ, Shemin RJ, Vondriska TM, Olcese R. PMID: 38860408; PMCID: PMC11255725.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    9. Circadian control of histone turnover during cardiac development and growth. J Biol Chem. 2024 07; 300(7):107434. Arrieta A, Chapski DJ, Reese A, Kimball TH, Song K, Rosa-Garrido M, Vondriska TM. PMID: 38830405; PMCID: PMC11261805.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    10. Histone H1.0 couples cellular mechanical behaviors to chromatin structure. Nat Cardiovasc Res. 2024; 3(4):441-459. Hu S, Chapski DJ, Gehred ND, Kimball TH, Gromova T, Flores A, Rowat AC, Chen J, Packard RRS, Olszewski E, Davis J, Rau CD, McKinsey TA, Rosa-Garrido M, Vondriska TM. PMID: 38765203; PMCID: PMC11101354.
      View in: PubMed   Mentions: 3  
    11. Decreased Left Atrial Cardiomyocyte FGF13 Expression Increases Vulnerability to Postoperative Atrial Fibrillation in Humans. bioRxiv. 2024 Jan 31. Fischer MA, Arrieta A, Angelini M, Soehalim E, Chapski DJ, Shemin RJ, Vondriska TM, Olcese R. PMID: 38352455; PMCID: PMC10862764.
      View in: PubMed   Mentions:
    12. Circadian Control of Histone Turnover During Cardiac Development and Growth. bioRxiv. 2023 Nov 14. Arrieta A, Chapski DJ, Reese A, Kimball T, Song K, Rosa-Garrido M, Vondriska TM. PMID: 38014083; PMCID: PMC10680691.
      View in: PubMed   Mentions:
    13. Integrative transcriptomics and cell systems analyses reveal protective pathways controlled by Igfbp-3 in anthracycline-induced cardiotoxicity. FASEB J. 2023 06; 37(6):e22977. Chen J, Chapski DJ, Jong J, Awada J, Wang Y, Slamon DJ, Vondriska TM, Packard RRS. PMID: 37219486; PMCID: PMC10286824.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    14. Rtf1 Transcriptionally Regulates Neonatal and Adult Cardiomyocyte Biology. J Cardiovasc Dev Dis. 2023 May 20; 10(5). Langenbacher AD, Lu F, Crisman L, Huang ZYS, Chapski DJ, Vondriska TM, Wang Y, Gao C, Chen JN. PMID: 37233188; PMCID: PMC10219292.
      View in: PubMed   Mentions: 1  
    15. Single-cell transcriptomes in the heart: when every epigenome counts. Cardiovasc Res. 2023 03 17; 119(1):64-78. Gromova T, Gehred ND, Vondriska TM. PMID: 35325060; PMCID: PMC10233279.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    16. Unwind to the beat: chromatin and cardiac conduction. J Clin Invest. 2023 02 01; 133(3). Chapski DJ, Vondriska TM. PMID: 36719369; PMCID: PMC9888370.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    17. Longitudinal profiling in patients undergoing cardiac surgery reveals postoperative changes in DNA methylation. Clin Epigenetics. 2022 12 30; 14(1):195. Fischer MA, Chapski DJ, Soehalim E, Montoya DJ, Grogan T, Pellegrini M, Cai H, Shemin RJ, Vondriska TM. PMID: 36585726; PMCID: PMC9805211.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    18. Nucleosome proteostasis and histone turnover. Front Mol Biosci. 2022; 9:990006. Arrieta A, Vondriska TM. PMID: 36250018; PMCID: PMC9563994.
      View in: PubMed   Mentions: 2  
    19. genomeSidekick: A user-friendly epigenomics data analysis tool. Front Bioinform. 2022; 2:831025. Chen J, Zhu AJ, Packard RRS, Vondriska TM, Chapski DJ. PMID: 36304311; PMCID: PMC9580848.
      View in: PubMed   Mentions: 1  
    20. Laparoscopic Sleeve Gastrectomy in Patients with Severe Obesity Restores Adaptive Responses Leading to Nonalcoholic Steatohepatitis. Int J Mol Sci. 2022 Jul 15; 23(14). Cabré N, Luciano-Mateo F, Chapski DJ, Baiges-Gaya G, Fernández-Arroyo S, Hernández-Aguilera A, Castañé H, Rodríguez-Tomàs E, París M, Sabench F, Castillo DD, Del Bas JM, Tomé M, Bodineau C, Sola-García A, López-Miranda J, Martín-Montalvo A, Durán RV, Vondriska TM, Rosa-Garrido M, Camps J, Menéndez JA, Joven J. PMID: 35887177; PMCID: PMC9320342.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    21. Sex differences in heart mitochondria regulate diastolic dysfunction. Nat Commun. 2022 07 04; 13(1):3850. Cao Y, Vergnes L, Wang YC, Pan C, Chella Krishnan K, Moore TM, Rosa-Garrido M, Kimball TH, Zhou Z, Charugundla S, Rau CD, Seldin MM, Wang J, Wang Y, Vondriska TM, Reue K, Lusis AJ. PMID: 35787630; PMCID: PMC9253085.
      View in: PubMed   Mentions: 37     Fields:    Translation:HumansAnimalsCells
    22. DNA Methylation-Based Prediction of Post-operative Atrial Fibrillation. Front Cardiovasc Med. 2022; 9:837725. Fischer MA, Mahajan A, Cabaj M, Kimball TH, Morselli M, Soehalim E, Chapski DJ, Montoya D, Farrell CP, Scovotti J, Bueno CT, Mimila NA, Shemin RJ, Elashoff D, Pellegrini M, Monte E, Vondriska TM. PMID: 35620521; PMCID: PMC9127230.
      View in: PubMed   Mentions: 7  
    23. How Chromatin Stiffens Fibroblasts. Curr Opin Physiol. 2022 Apr; 26. Hu S, Vondriska TM. PMID: 35979086; PMCID: PMC9380867.
      View in: PubMed   Mentions: 1  
    24. The anti-aging protein Klotho affects early postnatal myogenesis by downregulating Jmjd3 and the canonical Wnt pathway. FASEB J. 2022 03; 36(3):e22192. McKee CM, Chapski DJ, Wehling-Henricks M, Rosa-Garrido M, Kuro-O M, Vondriska TM, Tidball JG. PMID: 35174906; PMCID: PMC9007106.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    25. Transcriptional, Electrophysiological, and Metabolic Characterizations of hESC-Derived First and Second Heart Fields Demonstrate a Potential Role of TBX5 in Cardiomyocyte Maturation. Front Cell Dev Biol. 2021; 9:787684. Pezhouman A, Nguyen NB, Sercel AJ, Nguyen TL, Daraei A, Sabri S, Chapski DJ, Zheng M, Patananan AN, Ernst J, Plath K, Vondriska TM, Teitell MA, Ardehali R. PMID: 34988079; PMCID: PMC8722677.
      View in: PubMed   Mentions: 4  
    26. Early adaptive chromatin remodeling events precede pathologic phenotypes and are reinforced in the failing heart. J Mol Cell Cardiol. 2021 11; 160:73-86. Chapski DJ, Cabaj M, Morselli M, Mason RJ, Soehalim E, Ren S, Pellegrini M, Wang Y, Vondriska TM, Rosa-Garrido M. PMID: 34273410; PMCID: PMC9181638.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    27. Glutaminolysis-induced mTORC1 activation drives non-alcoholic steatohepatitis progression. J Hepatol. 2021 May 04. Cabré N, Luciano-Mateo F, Chapski DJ, Baiges-Gaya G, Fernández-Arroyo S, Hernández-Aguilera A, Castañé H, Rodríguez-Tomàs E, París M, Sabench F, Del Castillo D, Del Bas JM, Tomé M, Bodineau C, Sola-García A, López-Miranda J, Martín-Montalvo A, Durán RV, Vondriska TM, Rosa-Garrido M, Camps J, Menéndez JA, Joven J. PMID: 33961941.
      View in: PubMed   Mentions: 4     Fields:    
    28. Taking Data Science to Heart: Next Scale of Gene Regulation. Curr Cardiol Rep. 2021 03 15; 23(5):46. Chapski DJ, Vondriska TM. PMID: 33721129; PMCID: PMC8142693.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    29. Clinical epigenomics for cardiovascular disease: Diagnostics and therapies. J Mol Cell Cardiol. 2021 05; 154:97-105. Fischer MA, Vondriska TM. PMID: 33561434; PMCID: PMC8330446.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    30. Metabolism, Epigenetics, and Causal Inference in Heart Failure. Trends Endocrinol Metab. 2020 03; 31(3):181-191. Kimball TH, Vondriska TM. PMID: 31866216; PMCID: PMC7035178.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansAnimals
    31. Dissecting Chromatin Architecture for Novel Cardiovascular Disease Targets. Circulation. 2019 08 06; 140(6):446-448. Foo RS, Anene-Nzelu CG, Rosa-Garrido M, Vondriska TM. PMID: 31381426; PMCID: PMC6989048.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    32. Chromatin Is the Same in a Relative Way (But You're Older). Circ Res. 2019 07 05; 125(2):209-211. Mason RJ, Vondriska TM. PMID: 31268855; PMCID: PMC6652215.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    33. Direct visualization of cardiac transcription factories reveals regulatory principles of nuclear architecture during pathological remodeling. J Mol Cell Cardiol. 2019 03; 128:198-211. Karbassi E, Rosa-Garrido M, Chapski DJ, Wu Y, Ren S, Wang Y, Stefani E, Vondriska TM. PMID: 30742811; PMCID: PMC6644685.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansAnimalsCells
    34. Spatial Principles of Chromatin Architecture Associated With Organ-Specific Gene Regulation. Front Cardiovasc Med. 2018; 5:186. Chapski DJ, Rosa-Garrido M, Hua N, Alber F, Vondriska TM. PMID: 30697540; PMCID: PMC6341059.
      View in: PubMed   Mentions: 10  
    35. Epigenomic regulation of heart failure: integrating histone marks, long noncoding RNAs, and chromatin architecture. F1000Res. 2018; 7. McKinsey TA, Vondriska TM, Wang Y. PMID: 30416708; PMCID: PMC6206605.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansAnimalsCells
    36. Epigenomes in Cardiovascular Disease. Circ Res. 2018 05 25; 122(11):1586-1607. Rosa-Garrido M, Chapski DJ, Vondriska TM. PMID: 29798902; PMCID: PMC5976233.
      View in: PubMed   Mentions: 31     Fields:    Translation:HumansCells
    37. DNA Methylation and Human Heart Failure: Mechanisms or Prognostics. Circulation. 2017 10 17; 136(16):1545-1547. Rau CD, Vondriska TM. PMID: 29038208; PMCID: PMC5683409.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    38. High-Resolution Mapping of Chromatin Conformation in Cardiac Myocytes Reveals Structural Remodeling of the Epigenome in Heart Failure. Circulation. 2017 Oct 24; 136(17):1613-1625. Rosa-Garrido M, Chapski DJ, Schmitt AD, Kimball TH, Karbassi E, Monte E, Balderas E, Pellegrini M, Shih TT, Soehalim E, Liem D, Ping P, Galjart NJ, Ren S, Wang Y, Ren B, Vondriska TM. PMID: 28802249; PMCID: PMC5648689.
      View in: PubMed   Mentions: 89     Fields:    Translation:AnimalsCells
    39. Neural Circuit-Specialized Astrocytes: Transcriptomic, Proteomic, Morphological, and Functional Evidence. Neuron. 2017 Aug 02; 95(3):531-549.e9. Chai H, Diaz-Castro B, Shigetomi E, Monte E, Octeau JC, Yu X, Cohn W, Rajendran PS, Vondriska TM, Whitelegge JP, Coppola G, Khakh BS. PMID: 28712653; PMCID: PMC5811312.
      View in: PubMed   Mentions: 376     Fields:    Translation:AnimalsCells
    40. Epigenomic Disruption of Cardiovascular Care: What It Will Take. Circ Res. 2017 05 26; 120(11):1692-1693. Monte E, Fischer MA, Vondriska TM. PMID: 28546346; PMCID: PMC5527682.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    41. Operationalizing Precision Cardiovascular Medicine: Three Innovations. Circ Res. 2016 10 14; 119(9):984-987. Wang JJ, Aboulhosn JA, Hofer IS, Mahajan A, Wang Y, Vondriska TM. PMID: 27737942; PMCID: PMC5135087.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    42. The chromatin-binding protein Smyd1 restricts adult mammalian heart growth. Am J Physiol Heart Circ Physiol. 2016 11 01; 311(5):H1234-H1247. Franklin S, Kimball T, Rasmussen TL, Rosa-Garrido M, Chen H, Tran T, Miller MR, Gray R, Jiang S, Ren S, Wang Y, Tucker HO, Vondriska TM. PMID: 27663768; PMCID: PMC5130490.
      View in: PubMed   Mentions: 35     Fields:    Translation:HumansAnimalsCells
    43. Undiscovered Physiology of Transcript and Protein Networks. Compr Physiol. 2016 09 15; 6(4):1851-1872. Monte E, Rosa-Garrido M, Vondriska TM, Wang J. PMID: 27783861; PMCID: PMC10751805.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    44. The long noncoding RNA Chaer defines an epigenetic checkpoint in cardiac hypertrophy. Nat Med. 2016 10; 22(10):1131-1139. Wang Z, Zhang XJ, Ji YX, Zhang P, Deng KQ, Gong J, Ren S, Wang X, Chen I, Wang H, Gao C, Yokota T, Ang YS, Li S, Cass A, Vondriska TM, Li G, Deb A, Srivastava D, Yang HT, Xiao X, Li H, Wang Y. PMID: 27618650; PMCID: PMC5053883.
      View in: PubMed   Mentions: 200     Fields:    Translation:HumansAnimalsCells
    45. Relationship of disease-associated gene expression to cardiac phenotype is buffered by genetic diversity and chromatin regulation. Physiol Genomics. 2016 08 01; 48(8):601-15. Karbassi E, Monte E, Chapski DJ, Lopez R, Rosa Garrido M, Kim J, Wisniewski N, Rau CD, Wang JJ, Weiss JN, Wang Y, Lusis AJ, Vondriska TM. PMID: 27287924; PMCID: PMC5005461.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    46. Reciprocal Regulation of the Cardiac Epigenome by Chromatin Structural Proteins Hmgb and Ctcf: IMPLICATIONS FOR TRANSCRIPTIONAL REGULATION. J Biol Chem. 2016 07 22; 291(30):15428-46. Monte E, Rosa-Garrido M, Karbassi E, Chen H, Lopez R, Rau CD, Wang J, Nelson SF, Wu Y, Stefani E, Lusis AJ, Wang Y, Kurdistani SK, Franklin S, Vondriska TM. PMID: 27226577; PMCID: PMC4957031.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansAnimalsCells
    47. DNA Methylation Indicates Susceptibility to Isoproterenol-Induced Cardiac Pathology and Is Associated With Chromatin States. Circ Res. 2016 Mar 04; 118(5):786-97. Chen H, Orozco LD, Wang J, Rau CD, Rubbi L, Ren S, Wang Y, Pellegrini M, Lusis AJ, Vondriska TM. PMID: 26838786; PMCID: PMC4779427.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    48. RBFox1-mediated RNA splicing regulates cardiac hypertrophy and heart failure. J Clin Invest. 2016 Jan; 126(1):195-206. Gao C, Ren S, Lee JH, Qiu J, Chapski DJ, Rau CD, Zhou Y, Abdellatif M, Nakano A, Vondriska TM, Xiao X, Fu XD, Chen JN, Wang Y. PMID: 26619120; PMCID: PMC4701548.
      View in: PubMed   Mentions: 84     Fields:    Translation:HumansAnimalsCells
    49. Not low hanging but still sweet: Metabolic proteomes in cardiovascular disease. J Mol Cell Cardiol. 2016 Jan; 90:70-3. Monte E, Lopez R, Vondriska TM. PMID: 26611885.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    50. Transcriptome and proteome dynamics in the cardiovascular system. J Physiol. 2015 Apr 15; 593(8):1773-5. Vondriska TM. PMID: 25871561; PMCID: PMC4405740.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    51. Mitochondrial Ca(2+) uptake by the voltage-dependent anion channel 2 regulates cardiac rhythmicity. Elife. 2015 Jan 15; 4. Shimizu H, Schredelseker J, Huang J, Lu K, Naghdi S, Lu F, Franklin S, Fiji HD, Wang K, Zhu H, Tian C, Lin B, Nakano H, Ehrlich A, Nakai J, Stieg AZ, Gimzewski JK, Nakano A, Goldhaber JI, Vondriska TM, Hajnóczky G, Kwon O, Chen JN. PMID: 25588501; PMCID: PMC4293673.
      View in: PubMed   Mentions: 38     Fields:    Translation:AnimalsCells
    52. IRE1 phosphatase PP2Ce regulates adaptive ER stress response in the postpartum mammary gland. PLoS One. 2014; 9(11):e111606. Ren S, Lu G, Ota A, Zhou ZH, Vondriska TM, Lane TF, Wang Y. PMID: 25369058; PMCID: PMC4219728.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimalsCells
    53. Mesenchymal-endothelial transition contributes to cardiac neovascularization. Nature. 2014 Oct 30; 514(7524):585-90. Ubil E, Duan J, Pillai IC, Rosa-Garrido M, Wu Y, Bargiacchi F, Lu Y, Stanbouly S, Huang J, Rojas M, Vondriska TM, Stefani E, Deb A. PMID: 25317562; PMCID: PMC4214889.
      View in: PubMed   Mentions: 184     Fields:    Translation:AnimalsCells
    54. Proteomics in chromatin biology and epigenetics. Proteomics. 2014 Oct; 14(19):2105-8. Vondriska TM, Jensen ON. PMID: 25274254.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    55. How the proteome packages the genome for cardiovascular development. Proteomics. 2014 Oct; 14(19):2115-26. Karbassi E, Vondriska TM. PMID: 25074278; PMCID: PMC4270204.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    56. Epigenomes: the missing heritability in human cardiovascular disease? Proteomics Clin Appl. 2014 Aug; 8(7-8):480-7. Monte E, Vondriska TM. PMID: 24957631; PMCID: PMC4267468.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    57. Positive feedback in cardioprotection: can more mechanism lead to translation? Circ Res. 2014 Apr 11; 114(8):1225-7. Chapski DJ, Monte E, Vondriska TM. PMID: 24723653; PMCID: PMC4085981.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    58. Systems proteomics of cardiac chromatin identifies nucleolin as a regulator of growth and cellular plasticity in cardiomyocytes. Am J Physiol Heart Circ Physiol. 2013 Dec 01; 305(11):H1624-38. Monte E, Mouillesseaux K, Chen H, Kimball T, Ren S, Wang Y, Chen JN, Vondriska TM, Franklin S. PMID: 24077883; PMCID: PMC3882469.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    59. PPM1l encodes an inositol requiring-protein 1 (IRE1) specific phosphatase that regulates the functional outcome of the ER stress response. Mol Metab. 2013; 2(4):405-16. Lu G, Ota A, Ren S, Franklin S, Rau CD, Ping P, Lane TF, Zhou ZH, Reue K, Lusis AJ, Vondriska T, Wang Y. PMID: 24327956; PMCID: PMC3854994.
      View in: PubMed   Mentions: 16     Fields:    
    60. Regulation of chromatin structure in the cardiovascular system. Circ J. 2013; 77(6):1389-98. Rosa-Garrido M, Karbassi E, Monte E, Vondriska TM. PMID: 23575346; PMCID: PMC3704339.
      View in: PubMed   Mentions: 7     Fields:    
    61. Systems proteomics of healthy and diseased chromatin. Methods Mol Biol. 2013; 1005:77-93. Chen H, Monte E, Vondriska TM, Franklin S. PMID: 23606250; PMCID: PMC3704334.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    62. Quantitative analysis of chromatin proteomes in disease. J Vis Exp. 2012 Dec 28; (70). Monte E, Chen H, Kolmakova M, Parvatiyar M, Vondriska TM, Franklin S. PMID: 23299252; PMCID: PMC3577865.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    63. Structural considerations for chromatin state models with transcription as a functional readout. FEBS Lett. 2012 Oct 19; 586(20):3548-54. Chen H, Monte E, Parvatiyar MS, Rosa-Garrido M, Franklin S, Vondriska TM. PMID: 22940112; PMCID: PMC3495570.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    64. Features of endogenous cardiomyocyte chromatin revealed by super-resolution STED microscopy. J Mol Cell Cardiol. 2012 Oct; 53(4):552-8. Mitchell-Jordan S, Chen H, Franklin S, Stefani E, Bentolila LA, Vondriska TM. PMID: 22846883; PMCID: PMC3704345.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    65. Preclinical trials: Keep 'reproducibility' in context. Nature. 2012 May 02; 485(7396):41. Picha B, Thompson M, Vondriska TM. PMID: 22552083.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimals
    66. Quantitative analysis of the chromatin proteome in disease reveals remodeling principles and identifies high mobility group protein B2 as a regulator of hypertrophic growth. Mol Cell Proteomics. 2012 Jun; 11(6):M111.014258. Franklin S, Chen H, Mitchell-Jordan S, Ren S, Wang Y, Vondriska TM. PMID: 22270000; PMCID: PMC3433888.
      View in: PubMed   Mentions: 35     Fields:    Translation:AnimalsCells
    67. Genomes, proteomes, and the central dogma. Circ Cardiovasc Genet. 2011 Oct; 4(5):576. Franklin S, Vondriska TM. PMID: 22010165; PMCID: PMC3200573.
      View in: PubMed   Mentions: 14     Fields:    
    68. Highly efficient purification of protein complexes from mammalian cells using a novel streptavidin-binding peptide and hexahistidine tandem tag system: application to Bruton's tyrosine kinase. Protein Sci. 2011 Jan; 20(1):140-9. Li Y, Franklin S, Zhang MJ, Vondriska TM. PMID: 21080425; PMCID: PMC3047070.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansCells
    69. Specialized compartments of cardiac nuclei exhibit distinct proteomic anatomy. Mol Cell Proteomics. 2011 Jan; 10(1):M110.000703. Franklin S, Zhang MJ, Chen H, Paulsson AK, Mitchell-Jordan SA, Li Y, Ping P, Vondriska TM. PMID: 20807835; PMCID: PMC3013444.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    70. Stress signaling by Tec tyrosine kinase in the ischemic myocardium. Am J Physiol Heart Circ Physiol. 2010 Sep; 299(3):H713-22. Zhang MJ, Franklin S, Li Y, Wang S, Ru X, Mitchell-Jordan SA, Mano H, Stefani E, Ping P, Vondriska TM. PMID: 20543088; PMCID: PMC2944495.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCells
    71. Post-translational regulation of calsarcin-1 during pressure overload-induced cardiac hypertrophy. J Mol Cell Cardiol. 2010 Jun; 48(6):1206-14. Paulsson AK, Franklin S, Mitchell-Jordan SA, Ren S, Wang Y, Vondriska TM. PMID: 20170660; PMCID: PMC2866759.
      View in: PubMed   Mentions: 6     Fields:    
    72. Target identification using drug affinity responsive target stability (DARTS). Proc Natl Acad Sci U S A. 2009 Dec 22; 106(51):21984-9. Lomenick B, Hao R, Jonai N, Chin RM, Aghajan M, Warburton S, Wang J, Wu RP, Gomez F, Loo JA, Wohlschlegel JA, Vondriska TM, Pelletier J, Herschman HR, Clardy J, Clarke CF, Huang J. PMID: 19995983; PMCID: PMC2789755.
      View in: PubMed   Mentions: 376     Fields:    
    73. Protein phosphatase 2Cm is a critical regulator of branched-chain amino acid catabolism in mice and cultured cells. J Clin Invest. 2009 Jun; 119(6):1678-87. Lu G, Sun H, She P, Youn JY, Warburton S, Ping P, Vondriska TM, Cai H, Lynch CJ, Wang Y. PMID: 19411760; PMCID: PMC2689111.
      View in: PubMed   Mentions: 109     Fields:    
    74. Proteomics to identify proteins interacting with P2X2 ligand-gated cation channels. J Vis Exp. 2009 May 18; (27). Singh H, Warburton S, Vondriska TM, Khakh BS. PMID: 19455095; PMCID: PMC2794295.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    75. The effects of cascade length, kinetics and feedback loops on biological signal transduction dynamics in a simplified cascade model. Phys Biol. 2009 Feb 25; 6(1):016007. Qu Z, Vondriska TM. PMID: 19242047; PMCID: PMC2761888.
      View in: PubMed   Mentions: 8     Fields:    
    76. A new (heat) shocking player in cardiac hypertrophy. Circ Res. 2008 Nov 21; 103(11):1194-6. Vondriska TM, Wang Y. PMID: 19028916; PMCID: PMC2903428.
      View in: PubMed   Mentions: 3     Fields:    
    77. Loss of Bmx nonreceptor tyrosine kinase prevents pressure overload-induced cardiac hypertrophy. Circ Res. 2008 Dec 05; 103(12):1359-62. Mitchell-Jordan SA, Holopainen T, Ren S, Wang S, Warburton S, Zhang MJ, Alitalo K, Wang Y, Vondriska TM. PMID: 18988895; PMCID: PMC2735252.
      View in: PubMed   Mentions: 12     Fields:    
    78. Deducing topology of protein-protein interaction networks from experimentally measured sub-networks. BMC Bioinformatics. 2008 Jul 03; 9:301. Yang L, Vondriska TM, Han Z, Maclellan WR, Weiss JN, Qu Z. PMID: 18598366; PMCID: PMC2474618.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    79. Proteomic insights into cardiac cell death and survival. Proteomics Clin Appl. 2008 Jun; 2(6):837-44. Maclellan WR, Wang Y, Vondriska TM, Weiss JN, Ping P. PMID: 21136883; PMCID: PMC3808833.
      View in: PubMed   Mentions:    Fields:    
    80. Altered proteome biology of cardiac mitochondria under stress conditions. J Proteome Res. 2008 Jun; 7(6):2204-14. Zhang J, Liem DA, Mueller M, Wang Y, Zong C, Deng N, Vondriska TM, Korge P, Drews O, Maclellan WR, Honda H, Weiss JN, Apweiler R, Ping P. PMID: 18484766; PMCID: PMC3805274.
      View in: PubMed   Mentions: 22     Fields:    
    81. Acrolein consumption exacerbates myocardial ischemic injury and blocks nitric oxide-induced PKCepsilon signaling and cardioprotection. J Mol Cell Cardiol. 2008 Jun; 44(6):1016-1022. Wang GW, Guo Y, Vondriska TM, Zhang J, Zhang S, Tsai LL, Zong NC, Bolli R, Bhatnagar A, Prabhu SD. PMID: 18468618.
      View in: PubMed   Mentions: 42     Fields:    Translation:AnimalsCells
    82. Systematic characterization of the murine mitochondrial proteome using functionally validated cardiac mitochondria. Proteomics. 2008 Apr; 8(8):1564-75. Zhang J, Li X, Mueller M, Wang Y, Zong C, Deng N, Vondriska TM, Liem DA, Yang JI, Korge P, Honda H, Weiss JN, Apweiler R, Ping P. PMID: 18348319; PMCID: PMC2799225.
      View in: PubMed   Mentions: 39     Fields:    
    83. Cardiovascular Initiative of the Human Proteome Organisation, 5th Workshop October 2007, Seoul, Korea. Proteomics. 2008 Mar; 8(5):924-6. Warburton S, White MY, Van Eyk JE, Cotter RJ, Ping P, Dunn MJ, Vondriska TM. PMID: 18240139.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    84. Protein targets of oxidized phospholipids in endothelial cells. J Lipid Res. 2008 Mar; 49(3):510-20. Gugiu BG, Mouillesseaux K, Duong V, Herzog T, Hekimian A, Koroniak L, Vondriska TM, Watson AD. PMID: 18071189.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    85. The minimum information about a proteomics experiment (MIAPE). Nat Biotechnol. 2007 Aug; 25(8):887-93. Taylor CF, Paton NW, Lilley KS, Binz PA, Julian RK, Jones AR, Zhu W, Apweiler R, Aebersold R, Deutsch EW, Dunn MJ, Heck AJ, Leitner A, Macht M, Mann M, Martens L, Neubert TA, Patterson SD, Ping P, Seymour SL, Souda P, Tsugita A, Vandekerckhove J, Vondriska TM, Whitelegge JP, Wilkins MR, Xenarios I, Yates JR, Hermjakob H. PMID: 17687369.
      View in: PubMed   Mentions: 187     Fields:    Translation:Humans
    86. Signal transduction network motifs and biological memory. J Theor Biol. 2007 Jun 21; 246(4):755-61. Han Z, Vondriska TM, Yang L, Robb MacLellan W, Weiss JN, Qu Z. PMID: 17374382; PMCID: PMC2701969.
      View in: PubMed   Mentions: 9     Fields:    
    87. A functional annotation of subproteomes in human plasma. Proteomics. 2005 Aug; 5(13):3506-19. Ping P, Vondriska TM, Creighton CJ, Gandhi TK, Yang Z, Menon R, Kwon MS, Cho SY, Drwal G, Kellmann M, Peri S, Suresh S, Gronborg M, Molina H, Chaerkady R, Rekha B, Shet AS, Gerszten RE, Wu H, Raftery M, Wasinger V, Schulz-Knappe P, Hanash SM, Paik YK, Hancock WS, States DJ, Omenn GS, Pandey A. PMID: 16104058.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansCells
    88. Cardiovascular-related proteins identified in human plasma by the HUPO Plasma Proteome Project pilot phase. Proteomics. 2005 Aug; 5(13):3520-30. Berhane BT, Zong C, Liem DA, Huang A, Le S, Edmondson RD, Jones RC, Qiao X, Whitelegge JP, Ping P, Vondriska TM. PMID: 16052623.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
    89. The murine cardiac 26S proteasome: an organelle awaiting exploration. Ann N Y Acad Sci. 2005 Jun; 1047:197-207. Gomes AV, Zong C, Edmondson RD, Berhane BT, Wang GW, Le S, Young G, Zhang J, Vondriska TM, Whitelegge JP, Jones RC, Joshua IG, Thyparambil S, Pantaleon D, Qiao J, Loo J, Ping P. PMID: 16093497.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    90. Functional proteomic analysis of a three-tier PKCepsilon-Akt-eNOS signaling module in cardiac protection. Am J Physiol Heart Circ Physiol. 2005 Feb; 288(2):H954-61. Zhang J, Baines CP, Zong C, Cardwell EM, Wang G, Vondriska TM, Ping P. PMID: 15528226.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    91. Nitric oxide donors protect murine myocardium against infarction via modulation of mitochondrial permeability transition. Am J Physiol Heart Circ Physiol. 2005 Mar; 288(3):H1290-5. Wang G, Liem DA, Vondriska TM, Honda HM, Korge P, Pantaleon DM, Qiao X, Wang Y, Weiss JN, Ping P. PMID: 15528225.
      View in: PubMed   Mentions: 32     Fields:    Translation:AnimalsCells
    92. Heart disease leaves its mark: proteomics-based biosignatures in acute coronary syndromes. J Am Coll Cardiol. 2004 Oct 19; 44(8):1584-6. MacLellan WR, Ping P, Vondriska T. PMID: 15489089.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    93. Scaffold proteins and assembly of multiprotein signaling complexes. J Mol Cell Cardiol. 2004 Aug; 37(2):391-7. Vondriska TM, Pass JM, Ping P. PMID: 15276009.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimalsCells
    94. Bmx, a member of the Tec family of nonreceptor tyrosine kinases, is a novel participant in pharmacological cardioprotection. Am J Physiol Heart Circ Physiol. 2004 Nov; 287(5):H2364-6. Zhang J, Ping P, Wang GW, Lu M, Pantaleon D, Tang XL, Bolli R, Vondriska TM. PMID: 15191890.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    95. Multiprotein signaling complexes and regulation of cardiac phenotype. J Mol Cell Cardiol. 2003 Sep; 35(9):1027-33. Vondriska TM, Ping P. PMID: 12967625.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    96. Cardioprotection involves activation of NF-kappa B via PKC-dependent tyrosine and serine phosphorylation of I kappa B-alpha. Am J Physiol Heart Circ Physiol. 2003 Oct; 285(4):H1753-8. Zhang J, Ping P, Vondriska TM, Tang XL, Wang GW, Cardwell EM, Bolli R. PMID: 12829431.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    97. Functional proteomic analysis of the protein kinase C signaling system. Methods Mol Biol. 2003; 233:369-85. Pass JM, Zhang J, Vondriska TM, Ping P. PMID: 12840523.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    98. Cardiac toxic effects of trans-2-hexenal are mediated by induction of cardiomyocyte apoptotic pathways. Cardiovasc Toxicol. 2003; 3(4):341-51. Ping P, Baines CP, Gu Y, Prabhu SD, Zhang J, Tsai LL, Cardwell E, Zong NC, Vondriska TM, Korge P, Bhatnagar A, Wang GW. PMID: 14734831.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    99. Protein tyrosine kinase signaling is necessary for NO donor-induced late preconditioning against myocardial stunning. Am J Physiol Heart Circ Physiol. 2003 Apr; 284(4):H1441-8. Tang XL, Kodani E, Takano H, Hill M, Shinmura K, Vondriska TM, Ping P, Bolli R. PMID: 12531734.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    100. Functional proteomics to study protection of the ischaemic myocardium. Expert Opin Ther Targets. 2002 Oct; 6(5):563-70. Vondriska TM, Ping P. PMID: 12387680.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    101. Protein kinase C epsilon signaling complexes include metabolism- and transcription/translation-related proteins: complimentary separation techniques with LC/MS/MS. Mol Cell Proteomics. 2002 Jun; 1(6):421-33. Edmondson RD, Vondriska TM, Biederman KJ, Zhang J, Jones RC, Zheng Y, Allen DL, Xiu JX, Cardwell EM, Pisano MR, Ping P. PMID: 12169683.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansAnimalsCells
    102. Molecular conformation dictates signaling module formation: example of PKCepsilon and Src tyrosine kinase. Am J Physiol Heart Circ Physiol. 2002 Mar; 282(3):H1166-71. Song C, Vondriska TM, Wang GW, Klein JB, Cao X, Zhang J, Kang YJ, D'Souza S, Ping P. PMID: 11834516.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    103. Formation of protein kinase C(epsilon)-Lck signaling modules confers cardioprotection. J Clin Invest. 2002 Feb; 109(4):499-507. Ping P, Song C, Zhang J, Guo Y, Cao X, Li RC, Wu W, Vondriska TM, Pass JM, Tang XL, Pierce WM, Bolli R. PMID: 11854322; PMCID: PMC150872.
      View in: PubMed   Mentions: 41     Fields:    Translation:AnimalsCells
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