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Tom Chou

Title(s)Professor, Computational Medicine
SchoolMedicine
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    Collapse Research 
    Collapse research activities and funding
    Tracking clonal dynamics during hematopoiesis: mechanistic insight via modeling and data analysis
    NIH R01HL146552Apr 15, 2019 - Feb 28, 2023
    Role: Principal Investigator
    Mouse and mathematical models for HIV-1 suppression through HSPC
    NIH R56HL126544Sep 6, 2014 - Aug 31, 2016
    Role: Co-Principal Investigator
    Multiscale studies of HIV infection and treatment
    NIH K25AI058672Mar 1, 2004 - Nov 28, 2010
    Role: Principal Investigator
    Systems in Integrative Biology
    NIH T32GM008185Jul 1, 1987 - Jun 30, 2023
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Alcohol-induced deaths in the United States across age, race, gender, geography, and the COVID-19 pandemic. PLOS Glob Public Health. 2025; 5(9):e0004623. Wong T, Böttcher L, Chou T, D'Orsogna MR. PMID: 40961045; PMCID: PMC12443242.
      View in: PubMed   Mentions:
    2. Reconstructing noisy gene regulation dynamics using extrinsic-noise-driven neural stochastic differential equations. PLoS Comput Biol. 2025 Sep 17; 21(9):e1013462. Zhang J, Li X, Guo X, You Z, Böttcher L, Mogilner A, Hoffmann A, Chou T, Xia M. PMID: 40961166.
      View in: PubMed   Mentions:    Fields:    
    3. Correction: Aggregating multiple test results to improve medical decision-making. PLoS Comput Biol. 2025 Aug; 21(8):e1013347. Böttcher L, D'Orsogna MR, Chou T. PMID: 40758619; PMCID: PMC12321093.
      View in: PubMed   Mentions:    Fields:    
    4. Aggregating multiple test results to improve medical decision-making. PLoS Comput Biol. 2025 Jan; 21(1):e1012749. Böttcher L, D'Orsogna MR, Chou T. PMID: 39775197; PMCID: PMC11741652.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCellsPHPublic Health
    5. Kinetic theories of state- and generation-dependent cell populations. Phys Rev E. 2024 Dec; 110(6-1):064146. Xia M, Chou T. PMID: 39916132.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    6. Reliable ligand discrimination in stochastic multistep kinetic proofreading: First passage time vs. product counting strategies. PLoS Comput Biol. 2024 Jun; 20(6):e1012183. Li X, Chou T. PMID: 38857304; PMCID: PMC11192422.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    7. A probabilistic model of relapse in drug addiction. Math Biosci. 2024 Jun; 372:109184. Mao S, Chou T, D'Orsogna MR. PMID: 38582296.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    8. Overcompensation of transient and permanent death rate increases in age-structured models with cannibalistic interactions. ArXiv. 2024 Mar 15. Xia M, Li X, Chou T. PMID: 36911278; PMCID: PMC10002760.
      View in: PubMed   Mentions:
    9. Order-of-Mutation Effects on Cancer Progression: Models for Myeloproliferative Neoplasm. Bull Math Biol. 2024 02 16; 86(3):32. Wang Y, Shtylla B, Chou T. PMID: 38363386; PMCID: PMC10873249.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    10. Forecasting drug-overdose mortality by age in the United States at the national and county levels. PNAS Nexus. 2024 Feb; 3(2):pgae050. Böttcher L, Chou T, D'Orsogna MR. PMID: 38725534; PMCID: PMC11079616.
      View in: PubMed   Mentions: 4  
    11. Stochastic nucleosome disassembly mediated by remodelers and histone fragmentation. J Chem Phys. 2023 Nov 28; 159(20). Li X, Chou T. PMID: 38010331; PMCID: PMC10684310.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    12. The role of APOBEC3-induced mutations in the differential evolution of monkeypox virus. Virus Evol. 2023; 9(2):vead058. Li X, Habibipour S, Chou T, Yang OO. PMID: 37841642; PMCID: PMC10569380.
      View in: PubMed   Mentions: 1  
    13. Mathematical Characterization of Private and Public Immune Receptor Sequences. Bull Math Biol. 2023 09 14; 85(10):102. Böttcher L, Wald S, Chou T. PMID: 37707621; PMCID: PMC10501991.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    14. Stochastic nucleosome disassembly mediated by remodelers and histone fragmentation. ArXiv. 2023 Sep 06. Li X, Chou T. PMID: 37731652; PMCID: PMC10508821.
      View in: PubMed   Mentions:
    15. Order-of-mutation effects on cancer progression: models for myeloproliferative neoplasm. medRxiv. 2023 Aug 22. Wang Y, Shtylla B, Chou T. PMID: 37662184; PMCID: PMC10473807.
      View in: PubMed   Mentions:
    16. Order-of-mutation effects on cancer progression: models for myeloproliferative neoplasm. ArXiv. 2023 Aug 19. Wang Y, Shtylla B, Chou T. PMID: 37645049; PMCID: PMC10462171.
      View in: PubMed   Mentions:
    17. The role of APOBEC3-induced mutations in the differential evolution of monkeypox virus. ArXiv. 2023 Aug 07. Li X, Habibipour S, Chou T, Yang OO. PMID: 37608930; PMCID: PMC10441442.
      View in: PubMed   Mentions:
    18. Modeling and forecasting age-specific drug overdose mortality in the United States. Eur Phys J Spec Top. 2023 Apr 26; 1-10. Böttcher L, Chou T, D'Orsogna MR. PMID: 37359186; PMCID: PMC10132445.
      View in: PubMed   Mentions: 1  
    19. Modeling and forecasting age-specific drug overdose mortality in the United States. ArXiv. 2023 Mar 28. Böttcher L, Chou T, D'Orsogna MR. PMID: 37033462; PMCID: PMC10081349.
      View in: PubMed   Mentions:
    20. Fentanyl-driven acceleration of racial, gender and geographical disparities in drug overdose deaths in the United States. PLOS Glob Public Health. 2023; 3(3):e0000769. D'Orsogna MR, Böttcher L, Chou T. PMID: 36962959; PMCID: PMC10032521.
      View in: PubMed   Mentions: 27  
    21. Impact of random and targeted disruptions on information diffusion during outbreaks. Chaos. 2023 Mar; 33(3):033145. Masoomy H, Chou T, Böttcher L. PMID: 37003816.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCellsPHPublic Health
    22. Clonal abundance patterns in hematopoiesis: Mathematical modeling and parameter estimation. Front Syst Biol. 2023; 3:893366. Pan Y, D'Orsogna MR, Tang M, Stiehl T, Chou T. PMID: 40809480; PMCID: PMC12342013.
      View in: PubMed   Mentions:
    23. Stochastic dynamics and ribosome-RNAP interactions in transcription-translation coupling. Biophys J. 2023 01 03; 122(1):254-266. Li X, Chou T. PMID: 36199250; PMCID: PMC9822797.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    24. Discrete stochastic models of SELEX: Aptamer capture probabilities and protocol optimization. J Chem Phys. 2022 Jun 28; 156(24):244103. Wang Y, Mistry BA, Chou T. PMID: 35778075.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    25. Modelling the impact of birth control policies on China's population and age: effects of delayed births and minimum birth age constraints. R Soc Open Sci. 2022 Jun; 9(6):211619. Wang Y, Dessalles R, Chou T. PMID: 35706677; PMCID: PMC9174737.
      View in: PubMed   Mentions: 2  
    26. How Naive T-Cell Clone Counts Are Shaped By Heterogeneous Thymic Output and Homeostatic Proliferation. Front Immunol. 2021; 12:735135. Dessalles R, Pan Y, Xia M, Maestrini D, D'Orsogna MR, Chou T. PMID: 35250963; PMCID: PMC8891377.
      View in: PubMed   Mentions: 8     Fields:    Translation:Cells
    27. A mathematical model of reward-mediated learning in drug addiction. Chaos. 2022 Feb; 32(2):021102. Chou T, D'Orsogna MR. PMID: 35232044; PMCID: PMC8816520.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    28. Density- and elongation speed-dependent error correction in RNA polymerization. Phys Biol. 2022 01 25; 19(2). Zuo X, Chou T. PMID: 34937012.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    29. Xist nucleates local protein gradients to propagate silencing across the X chromosome. Cell. 2021 Dec 09; 184(25):6212. Markaki Y, Chong JG, Wang Y, Jacobson EC, Luong C, Tan SYX, Jachowicz JW, Strehle M, Maestrini D, Banerjee AK, Mistry BA, Dror I, Dossin F, Sch?neberg J, Heard E, Guttman M, Chou T, Plath K. PMID: 34890555; PMCID: PMC8722464.
      View in: PubMed   Mentions: 15     Fields:    
    30. A statistical model of COVID-19 testing in populations: effects of sampling bias andtesting errors. Philos Trans A Math Phys Eng Sci. 2022 Jan 10; 380(2214):20210121. Böttcher L, D'Orsogna MR, Chou T. PMID: 34802274; PMCID: PMC8607147.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansCells
    31. Xist nucleates local protein gradients to propagate silencing across the X chromosome. Cell. 2021 12 09; 184(25):6174-6192.e32. Markaki Y, Gan Chong J, Wang Y, Jacobson EC, Luong C, Tan SYX, Jachowicz JW, Strehle M, Maestrini D, Banerjee AK, Mistry BA, Dror I, Dossin F, Schöneberg J, Heard E, Guttman M, Chou T, Plath K. PMID: 34813726; PMCID: PMC8671326.
      View in: PubMed   Mentions: 63     Fields:    Translation:HumansAnimalsCells
    32. Mathematical Models of Blood-Brain Barrier Transport of Monoclonal Antibodies Targeting the Transferrin Receptor and the Insulin Receptor. Pharmaceuticals (Basel). 2021 Jun 03; 14(6). Pardridge WM, Chou T. PMID: 34205013; PMCID: PMC8226686.
      View in: PubMed   Mentions: 16  
    33. A statistical model of COVID-19 testing in populations: effects of sampling bias and testing errors. medRxiv. 2021 May 26. Böttcher L, D'Orsogna MR, Chou T. PMID: 34075386; PMCID: PMC8168390.
      View in: PubMed   Mentions:
    34. Using excess deaths and testing statistics to determine COVID-19 mortalities. Eur J Epidemiol. 2021 May; 36(5):545-558. Böttcher L, D'Orsogna MR, Chou T. PMID: 34002294; PMCID: PMC8127858.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansCells
    35. Uniformly accurate nonlinear transmission rate models arising from disease spread through pair contacts. Phys Rev E. 2021 Mar; 103(3-1):032306. Wylie J, Chou T. PMID: 33862712.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    36. Using excess deaths and testing statistics to improve estimates of COVID-19 mortalities. medRxiv. 2021 Jan 12. Böttcher L, D'Orsogna MR, Chou T. PMID: 33469606; PMCID: PMC7814852.
      View in: PubMed   Mentions:
    37. Using excess deaths and testing statistics to improve estimates of COVID-19 mortalities. ArXiv. 2021 Jan 10. Böttcher L, D'Orsogna MR, Chou T. PMID: 33442558; PMCID: PMC7805454.
      View in: PubMed   Mentions:
    38. Machine learning and statistical prediction of patient quality-of-life after prostate radiation therapy. Comput Biol Med. 2021 02; 129:104127. Yang Z, Olszewski D, He C, Pintea G, Lian J, Chou T, Chen RC, Shtylla B. PMID: 33333364.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    39. Mathematical modeling of depressive disorders: Circadian driving, bistability and dynamical transitions. Comput Struct Biotechnol J. 2021; 19:664-690. Cheng X, D'Orsogna MR, Chou T. PMID: 33510869; PMCID: PMC7815682.
      View in: PubMed   Mentions: 3  
    40. Why case fatality ratios can be misleading: individual- and population-based mortality estimates and factors influencing them. Phys Biol. 2020 09 23; 17(6):065003. Böttcher L, Xia M, Chou T. PMID: 32554901; PMCID: PMC8849595.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCellsPHPublic Health
    41. Why estimating population-based case fatality rates during epidemics may be misleading. medRxiv. 2020 Mar 30. Böttcher L, Xia M, Chou T. PMID: 32511575; PMCID: PMC7276002.
      View in: PubMed   Mentions:
    42. Diversity in biology: definitions, quantification and models. Phys Biol. 2020 03 19; 17(3):031001. Xu S, Böttcher L, Chou T. PMID: 31899899; PMCID: PMC8788892.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimals
    43. PDE MODELS OF ADDER MECHANISMS IN CELLULAR PROLIFERATION. SIAM J Appl Math. 2020; 80(3):1307-1335. Xia M, Greenman CD, Chou T. PMID: 35221385; PMCID: PMC8871769.
      View in: PubMed   Mentions: 4  
    44. Dynamics of T cell receptor distributions following acute thymic atrophy and resumption. Math Biosci Eng. 2019 09 23; 17(1):28-55. Lewkiewicz SM, Chuang YL, Chou T. PMID: 31731338; PMCID: PMC8788929.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    45. A Mathematical Model of the Effects of Aging on Naive T Cell Populations and Diversity. Bull Math Biol. 2019 07; 81(7):2783-2817. Lewkiewicz S, Chuang YL, Chou T. PMID: 31201663.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansCells
    46. Nonspecific probe binding and automatic gating in flow cytometry and fluorescence activated cell sorting (FACS). Math Biosci Eng. 2019 05 21; 16(5):4477-4490. Mistry BA, Chou T. PMID: 31499672.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    47. Evolution of Coagulation-Fragmentation Stochastic Processes Using Accurate Chemical Master Equation Approach. Commun Inf Syst. 2019; 19(1):37-55. Manuchehrfar F, Tian W, Chou T, Liang J. PMID: 34421394; PMCID: PMC8378664.
      View in: PubMed   Mentions:
    48. A Dynamical Bifurcation Model of Bipolar Disorder Based on Learned Expectation and Asymmetry in Mood Sensitivity. Comput Psychiatr. 2018 Dec; 2:205-222. Chang SS, Chou T. PMID: 30627671; PMCID: PMC6317753.
      View in: PubMed   Mentions: 8  
    49. Modeling large fluctuations of thousands of clones during hematopoiesis: The role of stem cell self-renewal and bursty progenitor dynamics in rhesus macaque. PLoS Comput Biol. 2018 10; 14(10):e1006489. Xu S, Kim S, Chen ISY, Chou T. PMID: 30335762; PMCID: PMC6218102.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    50. The Effects of Statistical Multiplicity of Infection on Virus Quantification and Infectivity Assays. Biophys J. 2018 06 19; 114(12):2974-2985. Mistry BA, D'Orsogna MR, Chou T. PMID: 29925033; PMCID: PMC6026352.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    51. Perturbing the Hypothalamic-Pituitary-Adrenal Axis: A Mathematical Model for Interpreting PTSD Assessment Tests. Comput Psychiatr. 2018 Feb; 2:28-49. Kim LU, D'Orsogna MR, Chou T. PMID: 30090861; PMCID: PMC6067831.
      View in: PubMed   Mentions: 6  
    52. Reconstruction of Cell Focal Adhesions using Physical Constraints and Compressive Regularization. Biophys J. 2017 Dec 05; 113(11):2530-2539. Chang JC, Liu Y, Chou T. PMID: 29212006; PMCID: PMC5738527.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    53. High-Speed "4D" Computational Microscopy of Bacterial Surface Motility. ACS Nano. 2017 09 26; 11(9):9340-9351. de Anda J, Lee EY, Lee CK, Bennett RR, Ji X, Soltani S, Harrison MC, Baker AE, Luo Y, Chou T, O'Toole GA, Armani AM, Golestanian R, Wong GCL. PMID: 28836761; PMCID: PMC5978429.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    54. Bidirectional Retroviral Integration Site PCR Methodology and Quantitative Data Analysis Workflow. J Vis Exp. 2017 06 14; (124). Suryawanshi GW, Xu S, Xie Y, Chou T, Kim N, Chen ISY, Kim S. PMID: 28654067; PMCID: PMC5608418.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    55. Quantifying the Sensitivity of HIV-1 Viral Entry to Receptor and Coreceptor Expression. J Phys Chem B. 2016 07 07; 120(26):6189-99. Mistry B, D'Orsogna MR, Webb NE, Lee B, Chou T. PMID: 27137677.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    56. A Hierarchical Kinetic Theory of Birth, Death and Fission in Age-Structured Interacting Populations. J Stat Phys. 2016; 164:49-76. Chou T, Greenman CD. PMID: 27335505; PMCID: PMC4894939.
      View in: PubMed   Mentions: 10  
    57. Swarming in viscous fluids: Three-dimensional patterns in swimmer- and force-induced flows. Phys Rev E. 2016 04; 93:043112. Chuang YL, Chou T, D'Orsogna MR. PMID: 27176395.
      View in: PubMed   Mentions: 6     Fields:    
    58. Onset, timing, and exposure therapy of stress disorders: mechanistic insight from a mathematical model of oscillating neuroendocrine dynamics. Biol Direct. 2016 Mar 25; 11(1):13. Kim LU, D'Orsogna MR, Chou T. PMID: 27013324; PMCID: PMC4807591.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansAnimals
    59. Kinetic theory of age-structured stochastic birth-death processes. Phys Rev E. 2016 Jan; 93(1):012112. Greenman CD, Chou T. PMID: 26871029.
      View in: PubMed   Mentions: 7     Fields:    
    60. Mechanisms of blood homeostasis: lineage tracking and a neutral model of cell populations in rhesus macaques. BMC Biol. 2015 Oct 20; 13:85. Goyal S, Kim S, Chen IS, Chou T. PMID: 26486451; PMCID: PMC4615871.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    61. Bayesian Uncertainty Quantification for Bond Energies and Mobilities Using Path Integral Analysis. Biophys J. 2015 Sep 01; 109(5):966-74. Chang JC, Fok PW, Chou T. PMID: 26331254; PMCID: PMC4564684.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    62. First assembly times and equilibration in stochastic coagulation-fragmentation. J Chem Phys. 2015 Jul 07; 143(1):014112. D'Orsogna MR, Lei Q, Chou T. PMID: 26156470.
      View in: PubMed   Mentions: 5     Fields:    
    63. Fixation times in differentiation and evolution in the presence of bottlenecks, deserts, and oases. J Theor Biol. 2015 May 07; 372:65-73. Chou T, Wang Y. PMID: 25744205; PMCID: PMC4390531.
      View in: PubMed   Mentions: 3     Fields:    
    64. Influence of the disc-fovea angle on limits of RNFL variability and glaucoma discrimination. Invest Ophthalmol Vis Sci. 2014 Oct 09; 55(11):7332-42. Amini N, Nowroozizadeh S, Cirineo N, Henry S, Chang T, Chou T, Coleman AL, Caprioli J, Nouri-Mahdavi K. PMID: 25301880; PMCID: PMC4235330.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansCells
    65. Distinct HIV-1 entry phenotypes are associated with transmission, subtype specificity, and resistance to broadly neutralizing antibodies. Retrovirology. 2014 Jun 23; 11:48. Chikere K, Webb NE, Chou T, Borm K, Sterjovski J, Gorry PR, Lee B. PMID: 24957778; PMCID: PMC4230403.
      View in: PubMed   Mentions: 18     Fields:    Translation:HumansCells
    66. Influence of correction of ocular magnification on spectral-domain OCT retinal nerve fiber layer measurement variability and performance. Invest Ophthalmol Vis Sci. 2014 Apr 29; 55(6):3439-46. Nowroozizadeh S, Cirineo N, Amini N, Knipping S, Chang T, Chou T, Caprioli J, Nouri-Mahdavi K. PMID: 24781941.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansCells
    67. Iterative graph cuts for image segmentation with a nonlinear statistical shape prior. J Math Imaging Vis. 2014 Mar 01; 49(1):87-97. Chang JC, Chou T. PMID: 24678141; PMCID: PMC3963360.
      View in: PubMed   Mentions: 1  
    68. Recidivism and rehabilitation of criminal offenders: a carrot and stick evolutionary game. PLoS One. 2014; 9(1):e85531. Berenji B, Chou T, D'Orsogna MR. PMID: 24454884; PMCID: PMC3894186.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    69. Combinatoric analysis of heterogeneous stochastic self-assembly. J Chem Phys. 2013 Sep 28; 139(12):121918. D'Orsogna MR, Zhao B, Berenji B, Chou T. PMID: 24089730.
      View in: PubMed   Mentions: 4     Fields:    
    70. Measurement of the optic disc vertical tilt angle with spectral-domain optical coherence tomography and influencing factors. Am J Ophthalmol. 2013 Oct; 156(4):737-44. Hosseini H, Nassiri N, Azarbod P, Giaconi J, Chou T, Caprioli J, Nouri-Mahdavi K. PMID: 23891337.
      View in: PubMed   Mentions: 39     Fields:    Translation:Humans
    71. Affinofile profiling: how efficiency of CD4/CCR5 usage impacts the biological and pathogenic phenotype of HIV. Virology. 2013 Jan 05; 435(1):81-91. Chikere K, Chou T, Gorry PR, Lee B. PMID: 23217618; PMCID: PMC3522187.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    72. First passage times in homogeneous nucleation and self-assembly. J Chem Phys. 2012 Dec 28; 137(24):244107. Yvinec R, D'Orsogna MR, Chou T. PMID: 23277928.
      View in: PubMed   Mentions: 9     Fields:    
    73. A mechanical model of retinal detachment. Phys Biol. 2012 Aug; 9(4):046001. Chou T, Siegel M. PMID: 22733081.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    74. Tracking monotonically advancing boundaries in image sequences using graph cuts and recursive kernel shape priors. IEEE Trans Med Imaging. 2012 May; 31(5):1008-20. Chang JC, Brennan KC, Chou T. PMID: 22156978; PMCID: PMC5510452.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    75. Coarsening and accelerated equilibration in mass-conserving heterogeneous nucleation. Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Jul; 84(1 Pt 1):011608. Chou T, D'Orsogna MR. PMID: 21867184.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    76. Diffusion-dependent mechanisms of receptor engagement and viral entry. J Phys Chem B. 2010 Nov 25; 114(46):15403-12. Gibbons MM, Chou T, D'Orsogna MR. PMID: 21038861.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    77. A mathematical model of intercellular signaling during epithelial wound healing. J Theor Biol. 2010 Sep 07; 266(1):70-8. Posta F, Chou T. PMID: 20685318; PMCID: PMC4403800.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    78. Frequency-dependent chemolocation and chemotactic target selection. Phys Biol. 2010 May 07; 7(2):026003. Nowak SA, Chakrabarti B, Chou T, Gopinathan A. PMID: 20453297.
      View in: PubMed   Mentions:    Fields:    
    79. Models of dynamic extraction of lipid tethers from cell membranes. Phys Biol. 2010 May 07; 7(2):026002. Nowak SA, Chou T. PMID: 20453295.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    80. Optimal cytoplasmic transport in viral infections. PLoS One. 2009 Dec 30; 4(12):e8165. D'Orsogna MR, Chou T. PMID: 20046829; PMCID: PMC2797302.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    81. A quantitative affinity-profiling system that reveals distinct CD4/CCR5 usage patterns among human immunodeficiency virus type 1 and simian immunodeficiency virus strains. J Virol. 2009 Nov; 83(21):11016-26. Johnston SH, Lobritz MA, Nguyen S, Lassen K, Delair S, Posta F, Bryson YJ, Arts EJ, Chou T, Lee B. PMID: 19692480; PMCID: PMC2772777.
      View in: PubMed   Mentions: 72     Fields:    Translation:HumansAnimalsCells
    82. Enhancement of charged macromolecule capture by nanopores in a salt gradient. J Chem Phys. 2009 Jul 21; 131(3):034703. Chou T. PMID: 19624217; PMCID: PMC2723907.
      View in: PubMed   Mentions: 9     Fields:    
    83. Accelerated search kinetics mediated by redox reactions of DNA repair enzymes. Biophys J. 2009 May 20; 96(10):3949-58. Fok PW, Chou T. PMID: 19450467; PMCID: PMC2712205.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    84. Enhancement of cargo processivity by cooperating molecular motors. Phys Chem Chem Phys. 2009 Jun 28; 11(24):4851-60. Posta F, D'Orsogna MR, Chou T. PMID: 19506760.
      View in: PubMed   Mentions: 9     Fields:    Translation:Cells
    85. Mechanisms of receptor/coreceptor-mediated entry of enveloped viruses. Biophys J. 2009 Apr 08; 96(7):2624-36. Nowak SA, Chou T. PMID: 19348746; PMCID: PMC2711287.
      View in: PubMed   Mentions: 11     Fields:    Translation:Cells
    86. Charge-transport-mediated recruitment of DNA repair enzymes. J Chem Phys. 2008 Dec 21; 129(23):235101. Fok PW, Guo CL, Chou T. PMID: 19102557; PMCID: PMC2671188.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    87. Membrane lipid segregation in endocytosis. Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Aug; 78(2 Pt 1):021908. Nowak SA, Chou T. PMID: 18850866.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    88. Degenerate ground-state lattices of membrane inclusions. Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Jul; 78(1 Pt 1):011401. Kim KS, Chou T, Rudnick J. PMID: 18763950.
      View in: PubMed   Mentions: 3     Fields:    
    89. Brownian ratchets driven by asymmetric nucleation of hydrolysis waves. Phys Rev Lett. 2007 Dec 14; 99(24):248302. Lakhanpal A, Chou T. PMID: 18233496.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    90. Dynamic boundaries in asymmetric exclusion processes. Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Sep; 76(3 Pt 1):031135. Nowak SA, Fok PW, Chou T. PMID: 17930227.
      View in: PubMed   Mentions: 5     Fields:    
    91. Multistage adsorption of diffusing macromolecules and viruses. J Chem Phys. 2007 Sep 14; 127(10):105101. Chou T, D'Orsogna MR. PMID: 17867780.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    92. Peeling and sliding in nucleosome repositioning. Phys Rev Lett. 2007 Aug 03; 99(5):058105. Chou T. PMID: 17930799.
      View in: PubMed   Mentions: 11     Fields:    Translation:Cells
    93. Exact steady-state velocity of ratchets driven by random sequential adsorption. J Phys A Math Gen. 2007 May 25; 40(21):5575-5584. D'Orsogna MR, Chou T, Antal T. PMID: 19081764; PMCID: PMC2600482.
      View in: PubMed   Mentions: 3  
    94. Stochastic entry of enveloped viruses: fusion versus endocytosis. Biophys J. 2007 Aug 15; 93(4):1116-23. Chou T. PMID: 17513379; PMCID: PMC1929032.
      View in: PubMed   Mentions: 11     Fields:    Translation:Cells
    95. Band gaps and the Kelvin-Helmholtz instability. Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Jan; 75(1 Pt 2):016315. Chou T. PMID: 17358261.
      View in: PubMed   Mentions:    Fields:    
    96. First passage and cooperativity of queuing kinetics. Phys Rev Lett. 2005 Oct 21; 95(17):170603. D'Orsogna MR, Chou T. PMID: 16383812.
      View in: PubMed   Mentions: 5     Fields:    
    97. First passage times of driven DNA hairpin unzipping. Phys Biol. 2005 Sep 12; 2(3):166-74. Lakatos G, Chou T, Bergersen B, Patey GN. PMID: 16224122.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    98. Steady-state properties of a totally asymmetric exclusion process with periodic structure. Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Jan; 71(1 Pt 1):011103. Lakatos G, Chou T, Kolomeisky A. PMID: 15697576.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimals
    99. Clustered bottlenecks in mRNA translation and protein synthesis. Phys Rev Lett. 2004 Nov 05; 93(19):198101. Chou T, Lakatos G. PMID: 15600884.
      View in: PubMed   Mentions: 24     Fields:    Translation:Cells
    100. Modeling the emergence of the 'hot zones': tuberculosis and the amplification dynamics of drug resistance. Nat Med. 2004 Oct; 10(10):1111-6. Blower SM, Chou T. PMID: 15378053.
      View in: PubMed   Mentions: 59     Fields:    Translation:HumansCellsPHPublic Health
    101. Physics of RecA-mediated homologous recognition. Biophys J. 2004 Sep; 87(3):1466-77. Klapstein K, Chou T, Bruinsma R. PMID: 15345529; PMCID: PMC1304555.
      View in: PubMed   Mentions: 12     Fields:    Translation:Cells
    102. Physical mechanisms of gas and perfluoron retinopexy and sub-retinal fluid displacement. Phys Med Biol. 2004 Jul 07; 49(13):2989-97. Foster WJ, Chou T. PMID: 15285260.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    103. Water alignment, dipolar interactions, and multiple proton occupancy during water-wire proton transport. Biophys J. 2004 May; 86(5):2827-36. Chou T. PMID: 15111400; PMCID: PMC1304152.
      View in: PubMed   Mentions: 6     Fields:    
    104. Chiral molecule adsorption on helical polymers. Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Feb; 69(2 Pt 1):021805. D'Orsogna MR, Chou T. PMID: 14995481.
      View in: PubMed   Mentions: 1     Fields:    
    105. Interplay of chemotaxis and chemokinesis mechanisms in bacterial dynamics. Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Aug; 68(2 Pt 1):021925. D'Orsogna MR, Suchard MA, Chou T. PMID: 14525024.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    106. Ribosome recycling, diffusion, and mRNA loop formation in translational regulation. Biophys J. 2003 Aug; 85(2):755-73. Chou T. PMID: 12885626; PMCID: PMC1303200.
      View in: PubMed   Mentions: 20     Fields:    Translation:Cells
    107. Geometry-dependent electrostatics near contact lines. Phys Rev Lett. 2001 Sep 03; 87(10):106101. Chou T. PMID: 11531488.
      View in: PubMed   Mentions:    Fields:    
    108. Statistical thermodynamics of membrane bending-mediated protein-protein attractions. Biophys J. 2001 Mar; 80(3):1075-87. Chou T, Kim KS, Oster G. PMID: 11222274; PMCID: PMC1301305.
      View in: PubMed   Mentions: 29     Fields:    Translation:Cells
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