Marc Adam Suchard

Title(s)Professor, Human Genetics
SchoolMedicine
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    Other Positions
    Title(s)Professor, Computational Medicine


    Collapse Research 
    Collapse Research Activities and Funding
    Statistical innovation to integrate sequences and phenotypes for scalable phylodynamic inference
    NIH R01AI153044Apr 9, 2021 - Mar 31, 2025
    Role: Principal Investigator
    Bayesian Joint Estimation of Alignment and Phylogeny
    NIH R01GM086887Aug 1, 2008 - Jul 31, 2015
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Unraveling COVID-19: A Large-Scale Characterization of 4.5 Million COVID-19 Cases Using CHARYBDIS. Clin Epidemiol. 2022; 14:369-384. Kostka K, Duarte-Salles T, Prats-Uribe A, Sena AG, Pistillo A, Khalid S, Lai LYH, Golozar A, Alshammari TM, Dawoud DM, Nyberg F, Wilcox AB, Andryc A, Williams A, Ostropolets A, Areia C, Jung CY, Harle CA, Reich CG, Blacketer C, Morales DR, Dorr DA, Burn E, Roel E, Tan EH, Minty E, DeFalco F, de Maeztu G, Lipori G, Alghoul H, Zhu H, Thomas JA, Bian J, Park J, Martínez Roldán J, Posada JD, Banda JM, Horcajada JP, Kohler J, Shah K, Natarajan K, Lynch KE, Liu L, Schilling LM, Recalde M, Spotnitz M, Gong M, Matheny ME, Valveny N, Weiskopf NG, Shah N, Alser O, Casajust P, Park RW, Schuff R, Seager S, DuVall SL, You SC, Song S, Fernández-Bertolín S, Fortin S, Magoc T, Falconer T, Subbian V, Huser V, Ahmed WU, Carter W, Guan Y, Galvan Y, He X, Rijnbeek PR, Hripcsak G, Ryan PB, Suchard MA, Prieto-Alhambra D. PMID: 35345821; PMCID: PMC8957305.
      View in: PubMed   Mentions:
    2. Current Approaches to Vaccine Safety Using Observational Data: A Rationale for the EUMAEUS (Evaluating Use of Methods for Adverse Events Under Surveillance-for Vaccines) Study Design. Front Pharmacol. 2022; 13:837632. Lai LY, Arshad F, Areia C, Alshammari TM, Alghoul H, Casajust P, Li X, Dawoud D, Nyberg F, Pratt N, Hripcsak G, Suchard MA, Prieto-Alhambra D, Ryan P, Schuemie MJ. PMID: 35392566; PMCID: PMC8980923.
      View in: PubMed   Mentions:
    3. Analysis of Dual Combination Therapies Used in Treatment of Hypertension in a Multinational Cohort. JAMA Netw Open. 2022 Mar 01; 5(3):e223877. Lu Y, Van Zandt M, Liu Y, Li J, Wang X, Chen Y, Chen Z, Cho J, Dorajoo SR, Feng M, Hsu MH, Hsu JC, Iqbal U, Jonnagaddala J, Li YC, Liaw ST, Lim HS, Ngiam KY, Nguyen PA, Park RW, Pratt N, Reich C, Rhee SY, Sathappan SMK, Shin SJ, Tan HX, You SC, Zhang X, Krumholz HM, Suchard MA, Xu H. PMID: 35323951.
      View in: PubMed   Mentions:
    4. Virome characterization of game animals in China reveals a spectrum of emerging pathogens. Cell. 2022 Mar 31; 185(7):1117-1129.e8. He WT, Hou X, Zhao J, Sun J, He H, Si W, Wang J, Jiang Z, Yan Z, Xing G, Lu M, Suchard MA, Ji X, Gong W, He B, Li J, Lemey P, Guo D, Tu C, Holmes EC, Shi M, Su S. PMID: 35298912.
      View in: PubMed   Mentions:
    5. Characteristics and outcomes of COVID-19 patients with and without asthma from the United States, South Korea, and Europe. J Asthma. 2022 Feb 11; 1-11. Morales D, Ostropolets A, Lai L, Sena A, Duvall S, Suchard M, Verhamme K, Rjinbeek P, Posada J, Ahmed W, Alshammary T, Alghoul H, Alser O, Areia C, Blacketer C, Burn E, Casajust P, You S, Dawoud D, Golozar A, Gong M, Jonnagaddala J, Lynch K, Matheny M, Minty E, Nyberg F, Uribe A, Recalde M, Reich C, Scheumie M, Shah K, Shah N, Schilling L, Vizcaya D, Zhang L, Hripcsak G, Ryan P, Prieto-Alhambra D, Durate-Salles T, Kostka K, Morales DR, Ostropolets A, Sena A, Duvall S, Suchard M, Verhamme K, Rjinbeek P, Posada J, Ahmed W, Alghoul H, Alser O, Areia C, Blacketer C, Burn E, Casajust P, You SC, Dawoud D, Golozar A, Lynch K, Matheny M, Uribe A, Reich C, Scheumie M, Shah K, Shah N, Schilling L, Zhang L, Hripcsak G, Ryan P, Prieto-Alhambra D, Kostka K. PMID: 35012410.
      View in: PubMed   Mentions:
    6. Phylogeography Reveals Association between Swine Trade and the Spread of Porcine Epidemic Diarrhea Virus in China and across the World. Mol Biol Evol. 2022 02 03; 39(2). He WT, Bollen N, Xu Y, Zhao J, Dellicour S, Yan Z, Gong W, Zhang C, Zhang L, Lu M, Lai A, Suchard MA, Ji X, Tu C, Lemey P, Baele G, Su S, He WT, Bollen N, Xu Y, Zhao J, Dellicour S, Yan Z, Gong W, Zhang C, Zhang L, Lu M, Lai A, Suchard MA, Ji X, Tu C, Lemey P, Baele G, Su S. PMID: 34951645; PMCID: PMC8826572.
      View in: PubMed   Mentions:
    7. Seek COVER: using a disease proxy to rapidly develop and validate a personalized risk calculator for COVID-19 outcomes in an international network. BMC Med Res Methodol. 2022 01 30; 22(1):35. Williams RD, Markus AF, Yang C, Duarte-Salles T, DuVall SL, Falconer T, Jonnagaddala J, Kim C, Rho Y, Williams AE, Machado AA, An MH, Aragón M, Areia C, Burn E, Choi YH, Drakos I, Abrahão MTF, Fernández-Bertolín S, Hripcsak G, Kaas-Hansen BS, Kandukuri PL, Kors JA, Kostka K, Liaw ST, Lynch KE, Machnicki G, Matheny ME, Morales D, Nyberg F, Park RW, Prats-Uribe A, Pratt N, Rao G, Reich CG, Rivera M, Seinen T, Shoaibi A, Spotnitz ME, Steyerberg EW, Suchard MA, You SC, Zhang L, Zhou L, Ryan PB, Prieto-Alhambra D, Reps JM, Rijnbeek PR. PMID: 35094685; PMCID: PMC8801189.
      View in: PubMed   Mentions:
    8. From viral evolution to spatial contagion: a biologically modulated Hawkes model. Bioinformatics. 2022 Jan 18. Holbrook AJ, Ji X, Suchard MA. PMID: 35040956; PMCID: PMC8963291.
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    9. Characteristics and outcomes of patients with COVID-19 with and without prevalent hypertension: a multinational cohort study. BMJ Open. 2021 12 22; 11(12):e057632. Reyes C, Pistillo A, Fernández-Bertolín S, Recalde M, Roel E, Puente D, Sena AG, Blacketer C, Lai L, Alshammari TM, Ahmed WU, Alser O, Alghoul H, Areia C, Dawoud D, Prats-Uribe A, Valveny N, de Maeztu G, Sorlí Redó L, Martinez Roldan J, Lopez Montesinos I, Schilling LM, Golozar A, Reich C, Posada JD, Shah N, You SC, Lynch KE, DuVall SL, Matheny ME, Nyberg F, Ostropolets A, Hripcsak G, Rijnbeek PR, Suchard MA, Ryan P, Kostka K, Duarte-Salles T. PMID: 34937726; PMCID: PMC8704062.
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    10. Context-specific emergence and growth of the SARS-CoV-2 Delta variant. medRxiv. 2021 Dec 21. McCrone JT, Hill V, Bajaj S, Pena RE, Lambert BC, Inward R, Bhatt S, Volz E, Ruis C, Dellicour S, Baele G, Zarebski AE, Sadilek A, Wu N, Schneider A, Ji X, Raghwani J, Jackson B, Colquhoun R, O'Toole Á, Peacock TP, Twohig K, Thelwall S, Dabrera G, Myers R, COVID-19 genomics UK (COG-UK) consortium, Faria NR, Huber C, Bogoch II, Khan K, du Plessis L, Barrett JC, Aanensen DM, Barclay WS, Chand M, Connor T, Loman NJ, Suchard MA, Pybus OG, Rambaut A, Kraemer MUG. PMID: 34981069; PMCID: PMC8722612.
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    11. Context-specific emergence and growth of the SARS-CoV-2 Delta variant. Res Sq. 2021 Dec 20. Kraemer M, McCrone J, Hill V, Bajaj S, Evans-Pena R, Lambert B, Inward R, Bhatt S, Volz E, Ruis C, Dellicour S, Baele G, Zarebski A, Sadilek A, Wu N, Schneider A, Ji X, Raghwani J, Jackson B, Colquhoun R, O'Toole A, Peacock T, Twohig K, Thelwall S, Dabrera G, Meyers R, Faria N, Huber C, Khan K, Bogoch I, Plessis L, Barrett J, Aanensen D, Barclay W, Chand M, Connor T, Loman N, Suchard M, Pybus O, Rambaut A. PMID: 34981043; PMCID: PMC8722606.
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    12. Global disparities in SARS-CoV-2 genomic surveillance. medRxiv. 2021 Dec 09. Brito AF, Semenova E, Dudas G, Hassler GW, Kalinich CC, Kraemer MUG, Hill SC, Danish Covid-19 Genome Consortium, Sabino EC, Pybus OG, Dye C, Bhatt S, Flaxamn S, Suchard MA, Grubaugh ND, Baele G, Faria NR, Brito AF, Semenova E, Dudas G, Hassler GW, Kalinich CC, Kraemer MUG, Ho J, Tegally H, Githinji G, Agoti CN, Matkin LE, Whittaker C, COVID-19 Impact Project, Network for Genomic Surveillance in South Africa (NGS-SA), GISAID core curation team, Howden BP, Sintchenko V, Zuckerman NS, Mor O, Blankenship HM, de Oliveira T, Lin RTP, Siqueira MM, Resende PC, Vasconcelos ATR, Spilki FR, Aguiar RS, Alexiev I, Ivanov IN, Philipova I, Carrington CVF, Sahadeo NSD, Gurry C, Maurer-Stroh S, Naidoo D, von Eije KJ, Perkins MD, van Kerkhove M, Hill SC, Sabino EC, Pybus OG, Dye C, Bhatt S, Flaxman S, Suchard MA, Grubaugh ND, Baele G, Faria NR. PMID: 34462754; PMCID: PMC8404891.
      View in: PubMed   Mentions: 1  
    13. Combining cox regressions across a heterogeneous distributed research network facing small and zero counts. Stat Methods Med Res. 2022 03; 31(3):438-450. Schuemie MJ, Chen Y, Madigan D, Suchard MA. PMID: 34841975.
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    14. Bias, Precision and Timeliness of Historical (Background) Rate Comparison Methods for Vaccine Safety Monitoring: An Empirical Multi-Database Analysis. Front Pharmacol. 2021; 12:773875. Li X, Lai LY, Ostropolets A, Arshad F, Tan EH, Casajust P, Alshammari TM, Duarte-Salles T, Minty EP, Areia C, Pratt N, Ryan PB, Hripcsak G, Suchard MA, Schuemie MJ, Prieto-Alhambra D. PMID: 34899334; PMCID: PMC8652333.
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    15. COVID-19 in patients with autoimmune diseases: characteristics and outcomes in a multinational network of cohorts across three countries. Rheumatology (Oxford). 2021 10 09; 60(SI):SI37-SI50. Tan EH, Sena AG, Prats-Uribe A, You SC, Ahmed WU, Kostka K, Reich C, Duvall SL, Lynch KE, Matheny ME, Duarte-Salles T, Bertolin SF, Hripcsak G, Natarajan K, Falconer T, Spotnitz M, Ostropolets A, Blacketer C, Alshammari TM, Alghoul H, Alser O, Lane JCE, Dawoud DM, Shah K, Yang Y, Zhang L, Areia C, Golozar A, Recalde M, Casajust P, Jonnagaddala J, Subbian V, Vizcaya D, Lai LYH, Nyberg F, Morales DR, Posada JD, Shah NH, Gong M, Vivekanantham A, Abend A, Minty EP, Suchard M, Rijnbeek P, Ryan PB, Prieto-Alhambra D. PMID: 33725121; PMCID: PMC7989171.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    16. A standardized analytics pipeline for reliable and rapid development and validation of prediction models using observational health data. Comput Methods Programs Biomed. 2021 Nov; 211:106394. Khalid S, Yang C, Blacketer C, Duarte-Salles T, Fernández-Bertolín S, Kim C, Park RW, Park J, Schuemie MJ, Sena AG, Suchard MA, You SC, Rijnbeek PR, Reps JM. PMID: 34560604; PMCID: PMC8420135.
      View in: PubMed   Mentions:    Fields:    
    17. Relax, Keep Walking - A Practical Guide to Continuous Phylogeographic Inference with BEAST. Mol Biol Evol. 2021 07 29; 38(8):3486-3493. Dellicour S, Gill MS, Faria NR, Rambaut A, Pybus OG, Suchard MA, Lemey P. PMID: 33528560; PMCID: PMC8321535.
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    18. Emergence of an early SARS-CoV-2 epidemic in the United States. Cell. 2021 09 16; 184(19):4939-4952.e15. Zeller M, Gangavarapu K, Anderson C, Smither AR, Vanchiere JA, Rose R, Snyder DJ, Dudas G, Watts A, Matteson NL, Robles-Sikisaka R, Marshall M, Feehan AK, Sabino-Santos G, Bell-Kareem AR, Hughes LD, Alkuzweny M, Snarski P, Garcia-Diaz J, Scott RS, Melnik LI, Klitting R, McGraw M, Belda-Ferre P, DeHoff P, Sathe S, Marotz C, Grubaugh ND, Nolan DJ, Drouin AC, Genemaras KJ, Chao K, Topol S, Spencer E, Nicholson L, Aigner S, Yeo GW, Farnaes L, Hobbs CA, Laurent LC, Knight R, Hodcroft EB, Khan K, Fusco DN, Cooper VS, Lemey P, Gardner L, Lamers SL, Kamil JP, Garry RF, Suchard MA, Andersen KG. PMID: 34508652; PMCID: PMC8313480.
      View in: PubMed   Mentions:    Fields:    Translation:HumansPHPublic Health
    19. Comparative First-Line Effectiveness and Safety of ACE (Angiotensin-Converting Enzyme) Inhibitors and Angiotensin Receptor Blockers: A Multinational Cohort Study. Hypertension. 2021 09; 78(3):591-603. Chen R, Suchard MA, Krumholz HM, Schuemie MJ, Shea S, Duke J, Pratt N, Reich CG, Madigan D, You SC, Ryan PB, Hripcsak G. PMID: 34304580; PMCID: PMC8363588.
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    20. Characteristics and Outcomes of Over 300,000 Patients with COVID-19 and History of Cancer in the United States and Spain. Cancer Epidemiol Biomarkers Prev. 2021 10; 30(10):1884-1894. Roel E, Pistillo A, Recalde M, Sena AG, Fernández-Bertolín S, Aragón M, Puente D, Ahmed WU, Alghoul H, Alser O, Alshammari TM, Areia C, Blacketer C, Carter W, Casajust P, Culhane AC, Dawoud D, DeFalco F, DuVall SL, Falconer T, Golozar A, Gong M, Hester L, Hripcsak G, Tan EH, Jeon H, Jonnagaddala J, Lai LYH, Lynch KE, Matheny ME, Morales DR, Natarajan K, Nyberg F, Ostropolets A, Posada JD, Prats-Uribe A, Reich CG, Rivera DR, Schilling LM, Soerjomataram I, Shah K, Shah NH, Shen Y, Spotniz M, Subbian V, Suchard MA, Trama A, Zhang L, Zhang Y, Ryan PB, Prieto-Alhambra D, Kostka K, Duarte-Salles T. PMID: 34272262.
      View in: PubMed   Mentions:    Fields:    Translation:HumansPHPublic Health
    21. Ebola vaccine-induced protection in nonhuman primates correlates with antibody specificity and Fc-mediated effects. Sci Transl Med. 2021 07 14; 13(602). Meyer M, Gunn BM, Malherbe DC, Gangavarapu K, Yoshida A, Pietzsch C, Kuzmina NA, Saphire EO, Collins PL, Crowe JE, Zhu JJ, Suchard MA, Brining DL, Mire CE, Cross RW, Geisbert JB, Samal SK, Andersen KG, Alter G, Geisbert TW, Bukreyev A. PMID: 34261800; PMCID: PMC8675601.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    22. A phenomapping-derived tool to personalize the selection of anatomical vs. functional testing in evaluating chest pain (ASSIST). Eur Heart J. 2021 07 08; 42(26):2536-2548. Oikonomou EK, Van Dijk D, Parise H, Suchard MA, de Lemos J, Antoniades C, Velazquez EJ, Miller EJ, Khera R. PMID: 33881513; PMCID: PMC8488385.
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    23. Risk of depression, suicide and psychosis with hydroxychloroquine treatment for rheumatoid arthritis: a multinational network cohort study. Rheumatology (Oxford). 2021 07 01; 60(7):3222-3234. Lane JCE, Weaver J, Kostka K, Duarte-Salles T, Abrahao MTF, Alghoul H, Alser O, Alshammari TM, Areia C, Biedermann P, Banda JM, Burn E, Casajust P, Fister K, Hardin J, Hester L, Hripcsak G, Kaas-Hansen BS, Khosla S, Kolovos S, Lynch KE, Makadia R, Mehta PP, Morales DR, Morgan-Stewart H, Mosseveld M, Newby D, Nyberg F, Ostropolets A, Woong Park R, Prats-Uribe A, Rao GA, Reich C, Rijnbeek P, Sena AG, Shoaibi A, Spotnitz M, Subbian V, Suchard MA, Vizcaya D, Wen H, Wilde M, Xie J, You SC, Zhang L, Lovestone S, Ryan P, Prieto-Alhambra D, OHDSI-COVID-19 consortium. PMID: 33367863; PMCID: PMC7798671.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    24. Untangling introductions and persistence in COVID-19 resurgence in Europe. Nature. 2021 07; 595(7869):713-717. Lemey P, Ruktanonchai N, Hong SL, Colizza V, Poletto C, Van den Broeck F, Gill MS, Ji X, Levasseur A, Oude Munnink BB, Koopmans M, Sadilek A, Lai S, Tatem AJ, Baele G, Suchard MA, Dellicour S. PMID: 34192736; PMCID: PMC8324533.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    25. Thirty-Day Outcomes of Children and Adolescents With COVID-19: An International Experience. Pediatrics. 2021 09; 148(3). Duarte-Salles T, Vizcaya D, Pistillo A, Casajust P, Sena AG, Lai LYH, Prats-Uribe A, Ahmed WU, Alshammari TM, Alghoul H, Alser O, Burn E, You SC, Areia C, Blacketer C, DuVall S, Falconer T, Fernandez-Bertolin S, Fortin S, Golozar A, Gong M, Tan EH, Huser V, Iveli P, Morales DR, Nyberg F, Posada JD, Recalde M, Roel E, Schilling LM, Shah NH, Shah K, Suchard MA, Zhang L, Zhang Y, Williams AE, Reich CG, Hripcsak G, Rijnbeek P, Ryan P, Kostka K, Prieto-Alhambra D. PMID: 34049958.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    26. A phylogenetic approach for weighting genetic sequences. BMC Bioinformatics. 2021 May 28; 22(1):285. De Maio N, Alekseyenko AV, Coleman-Smith WJ, Pardi F, Suchard MA, Tamuri AU, Truszkowski J, Goldman N. PMID: 34049487; PMCID: PMC8164272.
      View in: PubMed   Mentions:    Fields:    
    27. Use of repurposed and adjuvant drugs in hospital patients with covid-19: multinational network cohort study. BMJ. 2021 05 11; 373:n1038. Prats-Uribe A, Sena AG, Lai LYH, Ahmed WU, Alghoul H, Alser O, Alshammari TM, Areia C, Carter W, Casajust P, Dawoud D, Golozar A, Jonnagaddala J, Mehta PP, Gong M, Morales DR, Nyberg F, Posada JD, Recalde M, Roel E, Shah K, Shah NH, Schilling LM, Subbian V, Vizcaya D, Zhang L, Zhang Y, Zhu H, Liu L, Cho J, Lynch KE, Matheny ME, You SC, Rijnbeek PR, Hripcsak G, Lane JC, Burn E, Reich C, Suchard MA, Duarte-Salles T, Kostka K, Ryan PB, Prieto-Alhambra D. PMID: 33975825; PMCID: PMC8111167.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    28. Male-Female Disparities in Years of Potential Life Lost Attributable to COVID-19 in the United States: A State-by-State Analysis. medRxiv. 2021 May 05. Xu JJ, Chen JT, Belin TR, Brookmeyer RS, Suchard MA, Ramirez CM. PMID: 33972951; PMCID: PMC8109188.
      View in: PubMed   Mentions:
    29. Drawing Reproducible Conclusions from Observational Clinical Data with OHDSI. Yearb Med Inform. 2021 Aug; 30(1):283-289. Hripcsak G, Schuemie MJ, Madigan D, Ryan PB, Suchard MA. PMID: 33882595; PMCID: PMC8416226.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    30. Characterizing the incidence of adverse events of special interest for COVID-19 vaccines across eight countries: a multinational network cohort study. medRxiv. 2021 Apr 17. Li X, Ostropolets A, Makadia R, Shaoibi A, Rao G, Sena AG, Martinez-Hernandez E, Delmestri A, Verhamme K, Rijnbeek PR, Duarte-Salles T, Suchard M, Ryan P, Hripcsak G, Prieto-Alhambra D. PMID: 33791732; PMCID: PMC8010764.
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    31. Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil. Science. 2021 05 21; 372(6544):815-821. Faria NR, Mellan TA, Whittaker C, Claro IM, Candido DDS, Mishra S, Crispim MAE, Sales FCS, Hawryluk I, McCrone JT, Hulswit RJG, Franco LAM, Ramundo MS, de Jesus JG, Andrade PS, Coletti TM, Ferreira GM, Silva CAM, Manuli ER, Pereira RHM, Peixoto PS, Kraemer MUG, Gaburo N, Camilo CDC, Hoeltgebaum H, Souza WM, Rocha EC, de Souza LM, de Pinho MC, Araujo LJT, Malta FSV, de Lima AB, Silva JDP, Zauli DAG, Ferreira ACS, Schnekenberg RP, Laydon DJ, Walker PGT, Schlüter HM, Dos Santos ALP, Vidal MS, Del Caro VS, Filho RMF, Dos Santos HM, Aguiar RS, Proença-Modena JL, Nelson B, Hay JA, Monod M, Miscouridou X, Coupland H, Sonabend R, Vollmer M, Gandy A, Prete CA, Nascimento VH, Suchard MA, Bowden TA, Pond SLK, Wu CH, Ratmann O, Ferguson NM, Dye C, Loman NJ, Lemey P, Rambaut A, Fraiji NA, Carvalho MDPSS, Pybus OG, Flaxman S, Bhatt S, Sabino EC. PMID: 33853970; PMCID: PMC8139423.
      View in: PubMed   Mentions: 137     Fields:    Translation:HumansCells
    32. Implementation of the COVID-19 Vulnerability Index Across an International Network of Health Care Data Sets: Collaborative External Validation Study. JMIR Med Inform. 2021 Apr 05; 9(4):e21547. Reps JM, Kim C, Williams RD, Markus AF, Yang C, Duarte-Salles T, Falconer T, Jonnagaddala J, Williams A, Fernández-Bertolín S, DuVall SL, Kostka K, Rao G, Shoaibi A, Ostropolets A, Spotnitz ME, Zhang L, Casajust P, Steyerberg EW, Nyberg F, Kaas-Hansen BS, Choi YH, Morales D, Liaw ST, Abrahão MTF, Areia C, Matheny ME, Lynch KE, Aragón M, Park RW, Hripcsak G, Reich CG, Suchard MA, You SC, Ryan PB, Prieto-Alhambra D, Rijnbeek PR. PMID: 33661754; PMCID: PMC8023380.
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    33. Ebola Virus Transmission Initiated by Relapse of Systemic Ebola Virus Disease. N Engl J Med. 2021 04 01; 384(13):1240-1247. Mbala-Kingebeni P, Pratt C, Mutafali-Ruffin M, Pauthner MG, Bile F, Nkuba-Ndaye A, Black A, Kinganda-Lusamaki E, Faye M, Aziza A, Diagne MM, Mukadi D, White B, Hadfield J, Gangavarapu K, Bisento N, Kazadi D, Nsunda B, Akonga M, Tshiani O, Misasi J, Ploquin A, Epaso V, Sana-Paka E, N'kasar YTT, Mambu F, Edidi F, Matondo M, Bula Bula J, Diallo B, Keita M, Belizaire MRD, Fall IS, Yam A, Mulangu S, Rimion AW, Salfati E, Torkamani A, Suchard MA, Crozier I, Hensley L, Rambaut A, Faye O, Sall A, Sullivan NJ, Bedford T, Andersen KG, Wiley MR, Ahuka-Mundeke S, Muyembe Tamfum JJ. PMID: 33789012; PMCID: PMC7888312.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    34. Bayesian Phylogeographic Analysis Incorporating Predictors and Individual Travel Histories in BEAST. Curr Protoc. 2021 Apr; 1(4):e98. Hong SL, Lemey P, Suchard MA, Baele G. PMID: 33836121; PMCID: PMC8672455.
      View in: PubMed   Mentions: 3  Translation:Humans
    35. Emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States. Cell. 2021 05 13; 184(10):2587-2594.e7. Washington NL, Gangavarapu K, Zeller M, Bolze A, Cirulli ET, Schiabor Barrett KM, Larsen BB, Anderson C, White S, Cassens T, Jacobs S, Levan G, Nguyen J, Ramirez JM, Rivera-Garcia C, Sandoval E, Wang X, Wong D, Spencer E, Robles-Sikisaka R, Kurzban E, Hughes LD, Deng X, Wang C, Servellita V, Valentine H, De Hoff P, Seaver P, Sathe S, Gietzen K, Sickler B, Antico J, Hoon K, Liu J, Harding A, Bakhtar O, Basler T, Austin B, MacCannell D, Isaksson M, Febbo PG, Becker D, Laurent M, McDonald E, Yeo GW, Knight R, Laurent LC, de Feo E, Worobey M, Chiu CY, Suchard MA, Lu JT, Lee W, Andersen KG. PMID: 33861950; PMCID: PMC8009040.
      View in: PubMed   Mentions: 20     Fields:    Translation:Humans
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    210. Understanding GPU Programming for Statistical Computation: Studies in Massively Parallel Massive Mixtures. J Comput Graph Stat. 2010 Jun 01; 19(2):419-438. Suchard MA, Wang Q, Chan C, Frelinger J, Cron A, West M. PMID: 20877443; PMCID: PMC2945379.
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    211. Evolution and recombination of genes encoding HIV-1 drug resistance and tropism during antiretroviral therapy. Virology. 2010 Aug 15; 404(1):5-20. Shi B, Kitchen C, Weiser B, Mayers D, Foley B, Kemal K, Anastos K, Suchard M, Parker M, Brunner C, Burger H. PMID: 20451945; PMCID: PMC3186207.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansCells
    212. Using time-structured data to estimate evolutionary rates of double-stranded DNA viruses. Mol Biol Evol. 2010 Sep; 27(9):2038-51. Firth C, Kitchen A, Shapiro B, Suchard MA, Holmes EC, Rambaut A. PMID: 20363828; PMCID: PMC3107591.
      View in: PubMed   Mentions: 99     Fields:    Translation:Cells
    213. Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus) population dynamics. Proc Natl Acad Sci U S A. 2010 Mar 23; 107(12):5675-80. Campos PF, Willerslev E, Sher A, Orlando L, Axelsson E, Tikhonov A, Aaris-Sørensen K, Greenwood AD, Kahlke RD, Kosintsev P, Krakhmalnaya T, Kuznetsova T, Lemey P, MacPhee R, Norris CA, Shepherd K, Suchard MA, Zazula GD, Shapiro B, Gilbert MT. PMID: 20212118; PMCID: PMC2851807.
      View in: PubMed   Mentions: 44     Fields:    Translation:HumansAnimals
    214. Phylogeography takes a relaxed random walk in continuous space and time. Mol Biol Evol. 2010 Aug; 27(8):1877-85. Lemey P, Rambaut A, Welch JJ, Suchard MA. PMID: 20203288; PMCID: PMC2915639.
      View in: PubMed   Mentions: 193     Fields:    Translation:AnimalsPHPublic Health
    215. Reuse, Recycle, Reweigh: Combating Influenza through Efficient Sequential Bayesian Computation for Massive Data. Ann Appl Stat. 2010; 4(4):1722-1748. Tom JA, Sinsheimer JS, Suchard MA. PMID: 26681992; PMCID: PMC4679157.
      View in: PubMed   Mentions: 6  
    216. Unifying vertical and nonvertical evolution: a stochastic ARG-based framework. Syst Biol. 2010 Jan; 59(1):27-41. Bloomquist EW, Suchard MA. PMID: 20525618; PMCID: PMC2909786.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    217. Bayesian phylogeography finds its roots. PLoS Comput Biol. 2009 Sep; 5(9):e1000520. Lemey P, Rambaut A, Drummond AJ, Suchard MA. PMID: 19779555; PMCID: PMC2740835.
      View in: PubMed   Mentions: 611     Fields:    Translation:HumansAnimalsCells
    218. Reconstructing the initial global spread of a human influenza pandemic: A Bayesian spatial-temporal model for the global spread of H1N1pdm. PLoS Curr. 2009 Sep 02; 1:RRN1031. Lemey P, Suchard M, Rambaut A. PMID: 20029613; PMCID: PMC2762761.
      View in: PubMed   Mentions: 40  
    219. Improving phylogenetic analyses by incorporating additional information from genetic sequence databases. Bioinformatics. 2009 Oct 01; 25(19):2530-6. Liang LJ, Weiss RE, Redelings B, Suchard MA. PMID: 19661240; PMCID: PMC2800350.
      View in: PubMed   Mentions: 3     Fields:    
    220. Many-core algorithms for statistical phylogenetics. Bioinformatics. 2009 Jun 01; 25(11):1370-6. Suchard MA, Rambaut A. PMID: 19369496; PMCID: PMC2682525.
      View in: PubMed   Mentions: 143     Fields:    
    221. Two-way Bayesian hierarchical phylogenetic models: An application to the co-evolution of gp120 and gp41 during and after enfuvirtide treatment. Comput Stat Data Anal. 2009 Jan 15; 53(3):766-775. Kitchen CM, Kroll J, Kuritzkes DR, Bloomquist E, Deeks SG, Suchard MA. PMID: 20442796; PMCID: PMC2862497.
      View in: PubMed   Mentions: 2  
    222. Learning to count: robust estimates for labeled distances between molecular sequences. Mol Biol Evol. 2009 Apr; 26(4):801-14. O'Brien JD, Minin VN, Suchard MA. PMID: 19131426; PMCID: PMC2734148.
      View in: PubMed   Mentions: 54     Fields:    Translation:Cells
    223. Fast, accurate and simulation-free stochastic mapping. Philos Trans R Soc Lond B Biol Sci. 2008 Dec 27; 363(1512):3985-95. Minin VN, Suchard MA. PMID: 18852111; PMCID: PMC2607419.
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    224. Genetic diversity of the Leptospiral immunoglobulin-like (Lig) genes in pathogenic Leptospira spp. Infect Genet Evol. 2009 Mar; 9(2):196-205. McBride AJ, Cerqueira GM, Suchard MA, Moreira AN, Zuerner RL, Reis MG, Haake DA, Ko AI, Dellagostin OA. PMID: 19028604; PMCID: PMC2812920.
      View in: PubMed   Mentions: 34     Fields:    Translation:AnimalsCells
    225. Fully Bayesian tests of neutrality using genealogical summary statistics. BMC Genet. 2008 Oct 31; 9:68. Drummond AJ, Suchard MA. PMID: 18976476; PMCID: PMC2645432.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    226. Wagner and Dollo: a stochastic duet by composing two parsimonious solos. Syst Biol. 2008 Oct; 57(5):772-84. Alekseyenko AV, Lee CJ, Suchard MA. PMID: 18853363; PMCID: PMC4677801.
      View in: PubMed   Mentions: 18     Fields:    Translation:HumansAnimalsCells
    227. StepBrothers: inferring partially shared ancestries among recombinant viral sequences. Biostatistics. 2009 Jan; 10(1):106-20. Bloomquist EW, Dorman KS, Suchard MA. PMID: 18562348; PMCID: PMC2639346.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    228. Dating the time of viral subtype divergence. BMC Evol Biol. 2008 Jun 09; 8:172. O'Brien JD, She ZS, Suchard MA. PMID: 18541033; PMCID: PMC2443812.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    229. Pomegranate juice and extracts provide similar levels of plasma and urinary ellagitannin metabolites in human subjects. J Med Food. 2008 Jun; 11(2):390-4. Seeram NP, Zhang Y, McKeever R, Henning SM, Lee RP, Suchard MA, Li Z, Chen S, Thames G, Zerlin A, Nguyen M, Wang D, Dreher M, Heber D. PMID: 18598186; PMCID: PMC3196216.
      View in: PubMed   Mentions: 34     Fields:    Translation:HumansAnimals
    230. Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics. Mol Biol Evol. 2008 Jul; 25(7):1459-71. Minin VN, Bloomquist EW, Suchard MA. PMID: 18408232; PMCID: PMC3302198.
      View in: PubMed   Mentions: 275     Fields:    Translation:HumansCells
    231. Alignment uncertainty and genomic analysis. Science. 2008 Jan 25; 319(5862):473-6. Wong KM, Suchard MA, Huelsenbeck JP. PMID: 18218900.
      View in: PubMed   Mentions: 126     Fields:    Translation:AnimalsCells
    232. Representational oligonucleotide microarray analysis (ROMA) and comparison of binning and change-point methods of analysis: application to detection of del22q11.2 (DiGeorge) syndrome. Hum Mutat. 2008 Jan; 29(1):176-81. Stanczak CM, Chen Z, Nelson SF, Suchard M, McCabe ER, McGhee S. PMID: 17694540.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    233. A nonparametric method for accommodating and testing across-site rate variation. Syst Biol. 2007 Dec; 56(6):975-87. Huelsenbeck JP, Suchard MA. PMID: 18075934.
      View in: PubMed   Mentions: 19     Fields:    
    234. Leptospira interrogans endostatin-like outer membrane proteins bind host fibronectin, laminin and regulators of complement. PLoS One. 2007 Nov 14; 2(11):e1188. Stevenson B, Choy HA, Pinne M, Rotondi ML, Miller MC, Demoll E, Kraiczy P, Cooley AE, Creamer TP, Suchard MA, Brissette CA, Verma A, Haake DA. PMID: 18000555; PMCID: PMC2063517.
      View in: PubMed   Mentions: 84     Fields:    Translation:Cells
    235. Validation of candidate serum ovarian cancer biomarkers for early detection. Biomark Insights. 2007 Oct 16; 2:369-75. Su F, Lang J, Kumar A, Ng C, Hsieh B, Suchard MA, Reddy ST, Farias-Eisner R. PMID: 19662218; PMCID: PMC2717832.
      View in: PubMed   Mentions: 24  
    236. Counting labeled transitions in continuous-time Markov models of evolution. J Math Biol. 2008 Mar; 56(3):391-412. Minin VN, Suchard MA. PMID: 17874105.
      View in: PubMed   Mentions: 126     Fields:    
    237. Pomegranate ellagitannin-derived metabolites inhibit prostate cancer growth and localize to the mouse prostate gland. J Agric Food Chem. 2007 Sep 19; 55(19):7732-7. Seeram NP, Aronson WJ, Zhang Y, Henning SM, Moro A, Lee RP, Sartippour M, Harris DM, Rettig M, Suchard MA, Pantuck AJ, Belldegrun A, Heber D. PMID: 17722872.
      View in: PubMed   Mentions: 58     Fields:    Translation:HumansAnimals
    238. Development of an advanced electrochemical DNA biosensor for bacterial pathogen detection. J Mol Diagn. 2007 Apr; 9(2):158-68. Liao JC, Mastali M, Li Y, Gau V, Suchard MA, Babbitt J, Gornbein J, Landaw EM, McCabe ER, Churchill BM, Haake DA. PMID: 17384207; PMCID: PMC1867445.
      View in: PubMed   Mentions: 27     Fields:    Translation:Cells
    239. Incorporating indel information into phylogeny estimation for rapidly emerging pathogens. BMC Evol Biol. 2007 Mar 14; 7:40. Redelings BD, Suchard MA. PMID: 17359539; PMCID: PMC1853084.
      View in: PubMed   Mentions: 29     Fields:    Translation:Cells
    240. Phylogenetic mapping of recombination hotspots in human immunodeficiency virus via spatially smoothed change-point processes. Genetics. 2007 Apr; 175(4):1773-85. Minin VN, Dorman KS, Fang F, Suchard MA. PMID: 17194781; PMCID: PMC1855141.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansAnimalsCells
    241. cBrother: relaxing parental tree assumptions for Bayesian recombination detection. Bioinformatics. 2007 Feb 15; 23(4):507-8. Fang F, Ding J, Minin VN, Suchard MA, Dorman KS. PMID: 17145740.
      View in: PubMed   Mentions: 8     Fields:    Translation:Cells
    242. Continued evolution in gp41 after interruption of enfuvirtide in subjects with advanced HIV type 1 disease. AIDS Res Hum Retroviruses. 2006 Dec; 22(12):1260-6. Kitchen CM, Lu J, Suchard MA, Hoh R, Martin JN, Kuritzkes DR, Deeks SG. PMID: 17209769.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    243. Time squared: repeated measures on phylogenies. Mol Biol Evol. 2007 Feb; 24(2):352-62. Guo H, Weiss RE, Gu X, Suchard MA. PMID: 17079699.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimals
    244. Pomegranate juice ellagitannin metabolites are present in human plasma and some persist in urine for up to 48 hours. J Nutr. 2006 Oct; 136(10):2481-5. Seeram NP, Henning SM, Zhang Y, Suchard M, Li Z, Heber D. PMID: 16988113.
      View in: PubMed   Mentions: 96     Fields:    Translation:HumansAnimals
    245. Modeling of the temporal patterns of fluoxetine prescriptions and suicide rates in the United States. PLoS Med. 2006 Jun; 3(6):e190. Milane MS, Suchard MA, Wong ML, Licinio J. PMID: 16768544; PMCID: PMC1475655.
      View in: PubMed   Mentions: 22     Fields:    Translation:Humans
    246. BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny. Bioinformatics. 2006 Aug 15; 22(16):2047-8. Suchard MA, Redelings BD. PMID: 16679334.
      View in: PubMed   Mentions: 84     Fields:    Translation:Cells
    247. Use of electrochemical DNA biosensors for rapid molecular identification of uropathogens in clinical urine specimens. J Clin Microbiol. 2006 Feb; 44(2):561-70. Liao JC, Mastali M, Gau V, Suchard MA, Møller AK, Bruckner DA, Babbitt JT, Li Y, Gornbein J, Landaw EM, McCabe ER, Churchill BM, Haake DA. PMID: 16455913; PMCID: PMC1392664.
      View in: PubMed   Mentions: 66     Fields:    Translation:HumansCells
    248. Models for estimating bayes factors with applications to phylogeny and tests of monophyly. Biometrics. 2005 Sep; 61(3):665-73. Suchard MA, Weiss RE, Sinsheimer JS. PMID: 16135017.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansCells
    249. Joint Bayesian estimation of alignment and phylogeny. Syst Biol. 2005 Jun; 54(3):401-18. Redelings BD, Suchard MA. PMID: 16012107.
      View in: PubMed   Mentions: 88     Fields:    Translation:Cells
    250. Dual multiple change-point model leads to more accurate recombination detection. Bioinformatics. 2005 Jul 01; 21(13):3034-42. Minin VN, Dorman KS, Fang F, Suchard MA. PMID: 15914546.
      View in: PubMed   Mentions: 57     Fields:    
    251. Stochastic models for horizontal gene transfer: taking a random walk through tree space. Genetics. 2005 May; 170(1):419-31. Suchard MA. PMID: 15781714; PMCID: PMC1449731.
      View in: PubMed   Mentions: 17     Fields:    Translation:Cells
    252. Bayesian estimation of recent migration rates after a spatial expansion. Genetics. 2005 May; 170(1):409-17. Hamilton G, Currat M, Ray N, Heckel G, Beaumont M, Excoffier L. PMID: 15716508; PMCID: PMC1449703.
      View in: PubMed   Mentions: 30     Fields:    Translation:AnimalsCells
    253. Early nodal response as a predictor for necessity of functional neck dissection after chemoradiation. Cancer J. 2004 Nov-Dec; 10(6):339-42. Vongtama R, Lee M, Kim B, Sercarz J, Lin K, Suchard MA, Lee SP, Juillard G. PMID: 15701264.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    254. Evolution of human immunodeficiency virus type 1 coreceptor usage during antiretroviral Therapy: a Bayesian approach. J Virol. 2004 Oct; 78(20):11296-302. Kitchen CM, Philpott S, Burger H, Weiser B, Anastos K, Suchard MA. PMID: 15452249; PMCID: PMC521818.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCellsCTClinical Trials
    255. Physician knowledge of herbal toxicities and adverse herb-drug interactions. Eur J Emerg Med. 2004 Aug; 11(4):193-7. Suchard JR, Suchard MA, Steinfeldt JL. PMID: 15249804.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    256. Alterations in the dynamics of circulating ghrelin, adiponectin, and leptin in human obesity. Proc Natl Acad Sci U S A. 2004 Jul 13; 101(28):10434-9. Yildiz BO, Suchard MA, Wong ML, McCann SM, Licinio J. PMID: 15231997; PMCID: PMC478601.
      View in: PubMed   Mentions: 89     Fields:    Translation:HumansCells
    257. Molecular evolution and mosaicism of leptospiral outer membrane proteins involves horizontal DNA transfer. J Bacteriol. 2004 May; 186(9):2818-28. Haake DA, Suchard MA, Kelley MM, Dundoo M, Alt DP, Zuerner RL. PMID: 15090524; PMCID: PMC387810.
      View in: PubMed   Mentions: 62     Fields:    Translation:Cells
    258. Hierarchical phylogenetic models for analyzing multipartite sequence data. Syst Biol. 2003 Oct; 52(5):649-64. Suchard MA, Kitchen CM, Sinsheimer JS, Weiss RE. PMID: 14530132.
      View in: PubMed   Mentions: 46     Fields:    Translation:HumansAnimalsCells
    259. Interplay of chemotaxis and chemokinesis mechanisms in bacterial dynamics. Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Aug; 68(2 Pt 1):021925. D'Orsogna MR, Suchard MA, Chou T. PMID: 14525024.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    260. Testing a molecular clock without an outgroup: derivations of induced priors on branch-length restrictions in a Bayesian framework. Syst Biol. 2003 Feb; 52(1):48-54. Suchard MA, Weiss RE, Sinsheimer JS. PMID: 12554439.
      View in: PubMed   Mentions: 8     Fields:    Translation:Animals
    261. Are you my mother? Bayesian phylogenetic inference of recombination among putative parental strains. Appl Bioinformatics. 2003; 2(3):131-44. Sinsheimer JS, Suchard MA, Dorman KS, Fang F, Weiss RE. PMID: 15130798.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    262. Oh brother, where art thou? A Bayes factor test for recombination with uncertain heritage. Syst Biol. 2002 Oct; 51(5):715-28. Suchard MA, Weiss RE, Dorman KS, Sinsheimer JS. PMID: 12396586.
      View in: PubMed   Mentions: 14     Fields:    Translation:Cells
    263. Regulation of circulating soluble leptin receptor levels by gender, adiposity, sex steroids, and leptin: observational and interventional studies in humans. Diabetes. 2002 Jul; 51(7):2105-12. Chan JL, Blüher S, Yiannakouris N, Suchard MA, Kratzsch J, Mantzoros CS. PMID: 12086939.
      View in: PubMed   Mentions: 61     Fields:    Translation:HumansCells
    264. General practitioners' views on genetic screening for common diseases. Br J Gen Pract. 1999 Jan; 49(438):45-6. Suchard MA, Yudkin P, Sinsheimer JS, Fowler GH. PMID: 10622017; PMCID: PMC1313318.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
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