Marc Adam Suchard

Title(s)Professor, Human Genetics
Address612 Charles E. Young Drive, Ea 5303
Los Angeles CA 90024
Phone57442, 50936
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    Other Positions
    Title(s)Professor, Computational Medicine

    Collapse Research 
    Collapse Research Activities and Funding
    Bayesian Joint Estimation of Alignment and Phylogeny
    NIH R01GM086887Aug 1, 2008 - Jul 31, 2015
    Role: Principal Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. COVID-19 in patients with autoimmune diseases: characteristics and outcomes in a multinational network of cohorts across three countries. Rheumatology (Oxford). 2021 Mar 16. Tan EH, Sena AG, Prats-Uribe A, You SC, Ahmed WU, Kostka K, Reich C, Duvall SL, Lynch KE, Matheny ME, Duarte-Salles T, Bertolin SF, Hripcsak G, Natarajan K, Falconer T, Spotnitz M, Ostropolets A, Blacketer C, Alshammari TM, Alghoul H, Alser O, Lane JCE, Dawoud DM, Shah K, Yang Y, Zhang L, Areia C, Golozar A, Recalde M, Casajust P, Jonnagaddala J, Subbian V, Vizcaya D, Lai LYH, Nyberg F, Morales DR, Posada JD, Shah NH, Gong M, Vivekanantham A, Abend A, Minty EP, Suchard M, Rijnbeek P, Ryan PB, Prieto-Alhambra D. PMID: 33725121.
      View in: PubMed   Mentions:    Fields:    
    2. Genomics and epidemiology of a novel SARS-CoV-2 lineage in Manaus, Brazil. medRxiv. 2021 Mar 03. PMID: 33688664.
      View in: PubMed   Mentions:
    3. Unraveling COVID-19: a large-scale characterization of 4.5 million COVID-19 cases using CHARYBDIS. Res Sq. 2021 Mar 01. PMID: 33688639.
      View in: PubMed   Mentions:
    4. Can we trust the prediction model? Illustrating the importance of external validation by implementing the COVID-19 Vulnerability (C-19) Index across an international network of observational healthcare datasets. JMIR Med Inform. 2021 Feb 27. Reps JM, Kim C, Williams RD, Markus AF, Yang C, Salles TD, Falconer T, Jonnagaddala J, Williams A, Fernández-Bertolín S, DuVall SL, Kostka K, Rao G, Shoaibi A, Ostropolets A, Spotnitz ME, Zhang L, Casajust P, Steyerberg EW, Nyberg F, Kaas-Hansen BS, Choi YH, Morales D, Liaw ST, Abrahão MTF, Areia C, Matheny ME, Aragón M, Park RW, Hripcsak G, Reich CG, Suchard MA, You SC, Ryan PB, Prieto-Alhambra D, Rijnbeek PR. PMID: 33661754.
      View in: PubMed   Mentions:
    5. Relaxed Random Walks at Scale. Syst Biol. 2021 Feb 10; 70(2):258-267. Fisher AA, Ji X, Zhang Z, Lemey P, Suchard MA. PMID: 32687171.
      View in: PubMed   Mentions: 1     Fields:    
    6. SARS-CoV-2 European resurgence foretold: interplay of introductions and persistence by leveraging genomic and mobility data. Res Sq. 2021 Feb 10. Lemey P, Ruktanonchai N, Hong S, Colizza V, Poletto C, den Broeck FV, Gill M, Ji X, Levasseur A, Sadilek A, Lai S, Tatem A, Baele G, Suchard M, Dellicour S. PMID: 33594355.
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    7. Emergence of an early SARS-CoV-2 epidemic in the United States. medRxiv. 2021 Feb 08. Zeller M, Gangavarapu K, Anderson C, Smither AR, Vanchiere JA, Rose R, Dudas G, Snyder DJ, Watts A, Matteson NL, Robles-Sikisaka R, Marshall M, Feehan AK, Sabino-Santos G, Bell-Kareem A, Hughes LD, Alkuzweny M, Snarski P, Garcia-Diaz J, Scott RS, Melnik LI, Klitting R, McGraw M, Belda-Ferre P, DeHoff P, Sathe S, Marotz C, Grubaugh N, Nolan DJ, Drouin AC, Genemaras KJ, Chao K, Topol S, Spencer E, Nicholson L, Aigner S, Yeo GW, Farnaes L, Hobbs CA, Laurent LC, Knight R, Hodcroft EB, Khan K, Fusco DN, Cooper VS, Lemey P, Gardner L, Lamers SL, Kamil JP, Garry RF, Suchard MA, Andersen KG. PMID: 33564781.
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    8. Genomic epidemiology identifies emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States. medRxiv. 2021 Feb 07. Washington NL, Gangavarapu K, Zeller M, Bolze A, Cirulli ET, Schiabor Barrett KM, Larsen BB, Anderson C, White S, Cassens T, Jacobs S, Levan G, Nguyen J, Ramirez JM, Rivera-Garcia C, Sandoval E, Wang X, Wong D, Spencer E, Robles-Sikisaka R, Kurzban E, Hughes LD, Deng X, Wang C, Servellita V, Valentine H, De Hoff P, Seaver P, Sathe S, Gietzen K, Sickler B, Antico J, Hoon K, Liu J, Harding A, Bakhtar O, Basler T, Austin B, Isaksson M, Febbo P, Becker D, Laurent M, McDonald E, Yeo GW, Knight R, Laurent LC, de Feo E, Worobey M, Chiu C, Suchard MA, Lu JT, Lee W, Andersen KG. PMID: 33564780.
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    9. Relax, keep walking-a practical guide to continuous phylogeographic inference with BEAST. Mol Biol Evol. 2021 Feb 02. Dellicour S, Gill MS, Faria NR, Rambaut A, Pybus OG, Suchard MA, Lemey P. PMID: 33528560.
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    10. Markov-Modulated Continuous-Time Markov Chains to Identify Site- and Branch-Specific Evolutionary Variation in BEAST. Syst Biol. 2021 Jan 01; 70(1):181-189. Baele G, Gill MS, Bastide P, Lemey P, Suchard MA. PMID: 32415977.
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    11. Risk of depression, suicide and psychosis with hydroxychloroquine treatment for rheumatoid arthritis: a multinational network cohort study. Rheumatology (Oxford). 2020 Dec 25. Lane JCE, Weaver J, Kostka K, Duarte-Salles T, Abrahao MTF, Alghoul H, Alser O, Alshammari TM, Areia C, Biedermann P, Banda JM, Burn E, Casajust P, Fister K, Hardin J, Hester L, Hripcsak G, Kaas-Hansen BS, Khosla S, Kolovos S, Lynch KE, Makadia R, Mehta PP, Morales DR, Morgan-Stewart H, Mosseveld M, Newby D, Nyberg F, Ostropolets A, Woong Park R, Prats-Uribe A, Rao GA, Reich C, Rijnbeek P, Sena AG, Shoaibi A, Spotnitz M, Vignesh S, Suchard MA, Vizcaya D, Wen H, de Wilde M, Xie J, You SC, Zhang L, Lovestone S, Ryan P, Prieto-Alhambra D. PMID: 33367863.
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    12. Renin-angiotensin system blockers and susceptibility to COVID-19: an international, open science, cohort analysis. Lancet Digit Health. 2020 Dec 17. Morales DR, Conover MM, You SC, Pratt N, Kostka K, Duarte-Salles T, Fernández-Bertolín S, Aragón M, DuVall SL, Lynch K, Falconer T, van Bochove K, Sung C, Matheny ME, Lambert CG, Nyberg F, Alshammari TM, Williams AE, Park RW, Weaver J, Sena AG, Schuemie MJ, Rijnbeek PR, Williams RD, Lane JCE, Prats-Uribe A, Zhang L, Areia C, Krumholz HM, Prieto-Alhambra D, Ryan PB, Hripcsak G, Suchard MA. PMID: 33342753.
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    13. Determinants of dengue virus dispersal in the Americas. Virus Evol. 2020 Jul; 6(2):veaa074. Allicock OM, Sahadeo N, Lemey P, Auguste AJ, Suchard MA, Rambaut A, Carrington CVF. PMID: 33408877.
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    14. Characteristics, outcomes, and mortality amongst 133,589 patients with prevalent autoimmune diseases diagnosed with, and 48,418 hospitalised for COVID-19: a multinational distributed network cohort analysis. medRxiv. 2020 Nov 27. Tan EH, Sena AG, Prats-Uribe A, You SC, Ahmed WU, Kostka K, Reich C, Duvall SL, Lynch KE, Matheny ME, Duarte-Salles T, Bertolin SF, Hripcsak G, Natarajan K, Falconer T, Spotnitz M, Ostropolets A, Blacketer C, Alshammari TM, Alghoul H, Alser O, Lane JCE, Dawoud DM, Shah K, Yang Y, Zhang L, Areia C, Golozar A, Relcade M, Casajust P, Jonnagaddala J, Subbian V, Vizcaya D, Lai LY, Nyberg F, Morales DR, Posada JD, Shah NH, Gong M, Vivekanantham A, Abend A, Minty EP, Suchard M, Rijnbeek P, Ryan PB, Prieto-Alhambra D. PMID: 33269355.
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    15. Use of dialysis, tracheostomy, and extracorporeal membrane oxygenation among 240,392 patients hospitalized with COVID-19 in the United States. medRxiv. 2020 Nov 27. Burn E, Sena AG, Prats-Uribe A, Spotnitz M, DuVall S, Lynch KE, Matheny ME, Nyberg F, Ahmed WU, Alser O, Alghoul H, Alshammari T, Zhang L, Casajust P, Areia C, Shah K, Reich C, Blacketer C, Andryc A, Fortin S, Natarajan K, Gong M, Golozar A, Morales D, Rijnbeek P, Subbian V, Roel E, Recalde M, Lane JCE, Vizcaya D, Posada JD, Shah NH, Jonnagaddala J, Hui Lai LY, Avilés-Jurado FX, Hripcsak G, Suchard MA, Ranzani OT, Ryan P, Prieto-Alhambra D, Kostka K, Duarte-Salles T. PMID: 33269356.
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    16. Pseudo-likelihood based logistic regression for estimating COVID-19 infection and case fatality rates by gender, race, and age in California. Epidemics. 2020 Nov 09; 33:100418. Xiong D, Zhang L, Watson GL, Sundin P, Bufford T, Zoller JA, Shamshoian J, Suchard MA, Ramirez CM. PMID: 33221671.
      View in: PubMed   Mentions:    Fields:    Translation:HumansPHPublic Health
    17. Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework. Nat Commun. 2020 11 06; 11(1):5620. Dellicour S, Lequime S, Vrancken B, Gill MS, Bastide P, Gangavarapu K, Matteson NL, Tan Y, du Plessis L, Fisher AA, Nelson MI, Gilbert M, Suchard MA, Andersen KG, Grubaugh ND, Pybus OG, Lemey P. PMID: 33159066.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    18. Baseline characteristics, management, and outcomes of 55,270 children and adolescents diagnosed with COVID-19 and 1,952,693 with influenza in France, Germany, Spain, South Korea and the United States: an international network cohort study. medRxiv. 2020 Oct 30. Duarte-Salles T, Vizcaya D, Pistillo A, Casajust P, Sena AG, Lai LYH, Prats-Uribe A, Ahmed WU, Alshammari TM, Alghoul H, Alser O, Burn E, You SC, Areia C, Blacketer C, DuVall S, Falconer T, Fernandez-Bertolin S, Fortin S, Golozar A, Gong M, Tan EH, Huser V, Iveli P, Morales DR, Nyberg F, Posada JD, Recalde M, Roel E, Schilling LM, Shah NH, Shah K, Suchard MA, Zhang L, Williams AE, Reich CG, Kostka K, Prieto-Alhambra D. PMID: 33140074.
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    19. Baseline phenotype and 30-day outcomes of people tested for COVID-19: an international network cohort including >3.32 million people tested with real-time PCR and >219,000 tested positive for SARS-CoV-2 in South Korea, Spain and the United States. medRxiv. 2020 Oct 27. Golozar A, Lai LY, Sena AG, Vizcaya D, Schilling LM, Huser V, Nyberg F, Duvall SL, Morales DR, Alshammari TM, Abedtash H, Ahmed WU, Alser O, Alghoul H, Zhang Y, Gong M, Guan Y, Areia C, Jonnagaddala J, Shah K, Lane JCE, Prats-Uribe A, Posada JD, Shah NH, Subbian V, Zhang L, Fernandes Abrahão MT, Rijnbeek PR, You SC, Casajust P, Roel E, Recalde M, Fernández-Bertolín S, Andryc A, Thomas JA, Wilcox AB, Fortin S, Blacketer C, DeFalco F, Natarajan K, Falconer T, Spotnitz M, Ostropolets A, Hripcsak G, Suchard M, Lynch KE, Matheny ME, Williams A, Reich C, Duarte-Salles T, Kostka K, Ryan PB, Prieto-Alhambra D. PMID: 33140068.
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    20. Association of Ticagrelor vs Clopidogrel With Net Adverse Clinical Events in Patients With Acute Coronary Syndrome Undergoing Percutaneous Coronary Intervention. JAMA. 2020 10 27; 324(16):1640-1650. You SC, Rho Y, Bikdeli B, Kim J, Siapos A, Weaver J, Londhe A, Cho J, Park J, Schuemie M, Suchard MA, Madigan D, Hripcsak G, Gupta A, Reich CG, Ryan PB, Park RW, Krumholz HM. PMID: 33107944.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    21. Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2. Nat Commun. 2020 10 09; 11(1):5110. Lemey P, Hong SL, Hill V, Baele G, Poletto C, Colizza V, O'Toole Á, McCrone JT, Andersen KG, Worobey M, Nelson MI, Rambaut A, Suchard MA. PMID: 33037213.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCellsPHPublic Health
    22. Deep phenotyping of 34,128 adult patients hospitalised with COVID-19 in an international network study. Nat Commun. 2020 10 06; 11(1):5009. Burn E, You SC, Sena AG, Kostka K, Abedtash H, Abrahão MTF, Alberga A, Alghoul H, Alser O, Alshammari TM, Aragon M, Areia C, Banda JM, Cho J, Culhane AC, Davydov A, DeFalco FJ, Duarte-Salles T, DuVall S, Falconer T, Fernandez-Bertolin S, Gao W, Golozar A, Hardin J, Hripcsak G, Huser V, Jeon H, Jing Y, Jung CY, Kaas-Hansen BS, Kaduk D, Kent S, Kim Y, Kolovos S, Lane JCE, Lee H, Lynch KE, Makadia R, Matheny ME, Mehta PP, Morales DR, Natarajan K, Nyberg F, Ostropolets A, Park RW, Park J, Posada JD, Prats-Uribe A, Rao G, Reich C, Rho Y, Rijnbeek P, Schilling LM, Schuemie M, Shah NH, Shoaibi A, Song S, Spotnitz M, Suchard MA, Swerdel JN, Vizcaya D, Volpe S, Wen H, Williams AE, Yimer BB, Zhang L, Zhuk O, Prieto-Alhambra D, Ryan P. PMID: 33024121.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansPHPublic Health
    23. Gradients Do Grow on Trees: A Linear-Time O(N)-Dimensional Gradient for Statistical Phylogenetics. Mol Biol Evol. 2020 10 01; 37(10):3047-3060. Ji X, Zhang Z, Holbrook A, Nishimura A, Baele G, Rambaut A, Lemey P, Suchard MA. PMID: 32458974.
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    24. The emergence of SARS-CoV-2 in Europe and North America. Science. 2020 10 30; 370(6516):564-570. Worobey M, Pekar J, Larsen BB, Nelson MI, Hill V, Joy JB, Rambaut A, Suchard MA, Wertheim JO, Lemey P. PMID: 32912998.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansCellsPHPublic Health
    25. Genomic Epidemiology, Evolution, and Transmission Dynamics of Porcine Deltacoronavirus. Mol Biol Evol. 2020 09 01; 37(9):2641-2654. He WT, Ji X, He W, Dellicour S, Wang S, Li G, Zhang L, Gilbert M, Zhu H, Xing G, Veit M, Huang Z, Han GZ, Huang Y, Suchard MA, Baele G, Lemey P, Su S. PMID: 32407507.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    26. Risk of hydroxychloroquine alone and in combination with azithromycin in the treatment of rheumatoid arthritis: a multinational, retrospective study. Lancet Rheumatol. 2020 Nov; 2(11):e698-e711. Lane JCE, Weaver J, Kostka K, Duarte-Salles T, Abrahao MTF, Alghoul H, Alser O, Alshammari TM, Biedermann P, Banda JM, Burn E, Casajust P, Conover MM, Culhane AC, Davydov A, DuVall SL, Dymshyts D, Fernandez-Bertolin S, Fišter K, Hardin J, Hester L, Hripcsak G, Kaas-Hansen BS, Kent S, Khosla S, Kolovos S, Lambert CG, van der Lei J, Lynch KE, Makadia R, Margulis AV, Matheny ME, Mehta P, Morales DR, Morgan-Stewart H, Mosseveld M, Newby D, Nyberg F, Ostropolets A, Park RW, Prats-Uribe A, Rao GA, Reich C, Reps J, Rijnbeek P, Sathappan SMK, Schuemie M, Seager S, Sena AG, Shoaibi A, Spotnitz M, Suchard MA, Torre CO, Vizcaya D, Wen H, de Wilde M, Xie J, You SC, Zhang L, Zhuk O, Ryan P, Prieto-Alhambra D. PMID: 32864627.
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    27. Large-scale evidence generation and evaluation across a network of databases (LEGEND): assessing validity using hypertension as a case study. J Am Med Inform Assoc. 2020 08 01; 27(8):1268-1277. Schuemie MJ, Ryan PB, Pratt N, Chen R, You SC, Krumholz HM, Madigan D, Hripcsak G, Suchard MA. PMID: 32827027.
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    28. Principles of Large-scale Evidence Generation and Evaluation across a Network of Databases (LEGEND). J Am Med Inform Assoc. 2020 08 01; 27(8):1331-1337. Schuemie MJ, Ryan PB, Pratt N, Chen R, You SC, Krumholz HM, Madigan D, Hripcsak G, Suchard MA. PMID: 32909033.
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    29. Comparative safety and effectiveness of alendronate versus raloxifene in women with osteoporosis. Sci Rep. 2020 07 06; 10(1):11115. Kim Y, Tian Y, Yang J, Huser V, Jin P, Lambert CG, Park H, You SC, Park RW, Rijnbeek PR, Van Zandt M, Reich C, Vashisht R, Wu Y, Duke J, Hripcsak G, Madigan D, Shah NH, Ryan PB, Schuemie MJ, Suchard MA. PMID: 32632237.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    30. Accommodating individual travel history, global mobility, and unsampled diversity in phylogeography: a SARS-CoV-2 case study. bioRxiv. 2020 Jun 23. Lemey P, Hong S, Hill V, Baele G, Poletto C, Colizza V, O'Toole Á, McCrone JT, Andersen KG, Worobey M, Nelson MI, Rambaut A, Suchard MA. PMID: 32596695.
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    31. Measles virus and rinderpest virus divergence dated to the sixth century BCE. Science. 2020 06 19; 368(6497):1367-1370. Düx A, Lequime S, Patrono LV, Vrancken B, Boral S, Gogarten JF, Hilbig A, Horst D, Merkel K, Prepoint B, Santibanez S, Schlotterbeck J, Suchard MA, Ulrich M, Widulin N, Mankertz A, Leendertz FH, Harper K, Schnalke T, Lemey P, Calvignac-Spencer S. PMID: 32554594.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    32. Renin-angiotensin system blockers and susceptibility to COVID-19: a multinational open science cohort study. medRxiv. 2020 Jun 12. Morales DR, Conover MM, You SC, Pratt N, Kostka K, Duarte-Salles T, Fernández-Bertolín S, Aragón M, DuVall SL, Lynch K, Falconer T, van Bochove K, Sung C, Matheny ME, Lambert CG, Nyberg F, Alshammari TM, Williams AE, Park RW, Weaver J, Sena AG, Schuemie MJ, Rijnbeek PR, Williams RD, Lane JCE, Prats-Uribe A, Zhang L, Areia C, Krumholz HM, Prieto-Alhambra D, Ryan PB, Hripcsak G, Suchard MA. PMID: 32587982.
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    33. Online Bayesian Phylodynamic Inference in BEAST with Application to Epidemic Reconstruction. Mol Biol Evol. 2020 06 01; 37(6):1832-1842. Gill MS, Lemey P, Suchard MA, Rambaut A, Baele G. PMID: 32101295.
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    34. The emergence of SARS-CoV-2 in Europe and the US. bioRxiv. 2020 May 23. Worobey M, Pekar J, Larsen BB, Nelson MI, Hill V, Joy JB, Rambaut A, Suchard MA, Wertheim JO, Lemey P. PMID: 32511416.
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    35. Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable. Proc Natl Acad Sci U S A. 2020 06 09; 117(23):12522-12523. Mavian C, Pond SK, Marini S, Magalis BR, Vandamme AM, Dellicour S, Scarpino SV, Houldcroft C, Villabona-Arenas J, Paisie TK, Trovão NS, Boucher C, Zhang Y, Scheuermann RH, Gascuel O, Lam TT, Suchard MA, Abecasis A, Wilkinson E, de Oliveira T, Bento AI, Schmidt HA, Martin D, Hadfield J, Faria N, Grubaugh ND, Neher RA, Baele G, Lemey P, Stadler T, Albert J, Crandall KA, Leitner T, Stamatakis A, Prosperi M, Salemi M. PMID: 32381734.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansCellsPHPublic Health
    36. An international characterisation of patients hospitalised with COVID-19 and a comparison with those previously hospitalised with influenza. medRxiv. 2020 Apr 25. Burn E, You SC, Sena AG, Kostka K, Abedtash H, Abrahão MTF, Alberga A, Alghoul H, Alser O, Alshammari TM, Areia C, Banda JM, Cho J, Culhane AC, Davydov A, DeFalco FJ, Duarte-Salles T, DuVall S, Falconer T, Gao W, Golozar A, Hardin J, Hripcsak G, Huser V, Jeon H, Jing Y, Jung CY, Kaas-Hansen BS, Kaduk D, Kent S, Kim Y, Kolovos S, Lane JCE, Lee H, Lynch KE, Makadia R, Matheny ME, Mehta P, Morales DR, Natarajan K, Nyberg F, Ostropolets A, Park RW, Park J, Posada JD, Prats-Uribe A, Rao G, Reich C, Rho Y, Rijnbeek P, Sathappan SMK, Schilling LM, Schuemie M, Shah NH, Shoaibi A, Song S, Spotnitz M, Suchard MA, Swerdel JN, Vizcaya D, Volpe S, Wen H, Williams AE, Yimer BB, Zhang L, Zhuk O, Prieto-Alhambra D, Ryan P. PMID: 32511443.
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    37. Incorporating heterogeneous sampling probabilities in continuous phylogeographic inference - Application to H5N1 spread in the Mekong region. Bioinformatics. 2020 04 01; 36(7):2098-2104. Dellicour S, Lemey P, Artois J, Lam TT, Fusaro A, Monne I, Cattoli G, Kuznetsov D, Xenarios I, Dauphin G, Kalpravidh W, Von Dobschuetz S, Claes F, Newman SH, Suchard MA, Baele G, Gilbert M. PMID: 31790143.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCellsPHPublic Health
    38. Hamiltonian Monte Carlo sampling to estimate past population dynamics using the skygrid coalescent model in a Bayesian phylogenetics framework. Wellcome Open Res. 2020; 5:53. Baele G, Gill MS, Lemey P, Suchard MA. PMID: 32923688.
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    39. COVID-19: Epidemiology, Evolution, and Cross-Disciplinary Perspectives. Trends Mol Med. 2020 05; 26(5):483-495. Sun J, He WT, Wang L, Lai A, Ji X, Zhai X, Li G, Suchard MA, Tian J, Zhou J, Veit M, Su S. PMID: 32359479.
      View in: PubMed   Mentions: 56     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    40. Assessing the role of live poultry trade in community-structured transmission of avian influenza in China. Proc Natl Acad Sci U S A. 2020 03 17; 117(11):5949-5954. Yang Q, Zhao X, Lemey P, Suchard MA, Bi Y, Shi W, Liu D, Qi W, Zhang G, Stenseth NC, Pybus OG, Tian H. PMID: 32123088.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    41. In Search of Covariates of HIV-1 Subtype B Spread in the United States-A Cautionary Tale of Large-Scale Bayesian Phylogeography. Viruses. 2020 02 05; 12(2). Hong SL, Dellicour S, Vrancken B, Suchard MA, Pyne MT, Hillyard DR, Lemey P, Baele G. PMID: 32033422.
      View in: PubMed   Mentions: 2     Fields:    
    42. How Confident Are We about Observational Findings in Healthcare: A Benchmark Study. Harv Data Sci Rev. 2020; 2(1). Schuemie MJ, Cepeda MS, Suchard MA, Yang J, Tian Y, Schuler A, Ryan PB, Madigan D, Hripcsak G. PMID: 33367288.
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    43. Symptom evolution following the emergence of maize streak virus. Elife. 2020 Jan 15; 9. Monjane AL, Dellicour S, Hartnady P, Oyeniran KA, Owor BE, Bezuidenhout M, Linderme D, Syed RA, Donaldson L, Murray S, Rybicki EP, Kvarnheden A, Yazdkhasti E, Lefeuvre P, Froissart R, Roumagnac P, Shepherd DN, Harkins GW, Suchard MA, Lemey P, Varsani A, Martin DP. PMID: 31939738.
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    44. A surrogate l0 sparse Cox's regression with applications to sparse high-dimensional massive sample size time-to-event data. Stat Med. 2020 03 15; 39(6):675-686. Kawaguchi ES, Suchard MA, Liu Z, Li G. PMID: 31814146.
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    45. Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa. PLoS Pathog. 2019 12; 15(12):e1007976. Faria NR, Vidal N, Lourenco J, Raghwani J, Sigaloff KCE, Tatem AJ, van de Vijver DAM, Pineda-Peña AC, Rose R, Wallis CL, Ahuka-Mundeke S, Muyembe-Tamfum JJ, Muwonga J, Suchard MA, Rinke de Wit TF, Hamers RL, Ndembi N, Baele G, Peeters M, Pybus OG, Lemey P, Dellicour S. PMID: 31809523.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    46. BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics. Syst Biol. 2019 11 01; 68(6):1052-1061. Ayres DL, Cummings MP, Baele G, Darling AE, Lewis PO, Swofford DL, Huelsenbeck JP, Lemey P, Rambaut A, Suchard MA. PMID: 31034053.
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    47. Comprehensive comparative effectiveness and safety of first-line antihypertensive drug classes: a systematic, multinational, large-scale analysis. Lancet. 2019 11 16; 394(10211):1816-1826. Suchard MA, Schuemie MJ, Krumholz HM, You SC, Chen R, Pratt N, Reich CG, Duke J, Madigan D, Hripcsak G, Ryan PB. PMID: 31668726.
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    48. Divergence dating using mixed effects clock modelling: An application to HIV-1. Virus Evol. 2019 Jul; 5(2):vez036. Bletsa M, Suchard MA, Ji X, Gryseels S, Vrancken B, Baele G, Worobey M, Lemey P. PMID: 31720009.
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    53. BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. PLoS Comput Biol. 2019 04; 15(4):e1006650. Bouckaert R, Vaughan TG, Barido-Sottani J, Duchêne S, Fourment M, Gavryushkina A, Heled J, Jones G, Kühnert D, De Maio N, Matschiner M, Mendes FK, Müller NF, Ogilvie HA, du Plessis L, Popinga A, Rambaut A, Rasmussen D, Siveroni I, Suchard MA, Wu CH, Xie D, Zhang C, Stadler T, Drummond AJ. PMID: 30958812.
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    60. Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak. Nat Commun. 2018 06 08; 9(1):2222. Dellicour S, Baele G, Dudas G, Faria NR, Pybus OG, Suchard MA, Rambaut A, Lemey P. PMID: 29884821.
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    63. Empirical confidence interval calibration for population-level effect estimation studies in observational healthcare data. Proc Natl Acad Sci U S A. 2018 03 13; 115(11):2571-2577. Schuemie MJ, Hripcsak G, Ryan PB, Madigan D, Suchard MA. PMID: 29531023.
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    64. Computational methods for birth-death processes. Wiley Interdiscip Rev Comput Stat. 2018 Mar-Apr; 10(2). Crawford FW, Ho LST, Suchard MA. PMID: 29942419.
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    67. Risk of angioedema associated with levetiracetam compared with phenytoin: Findings of the observational health data sciences and informatics research network. Epilepsia. 2017 08; 58(8):e101-e106. Duke JD, Ryan PB, Suchard MA, Hripcsak G, Jin P, Reich C, Schwalm MS, Khoma Y, Wu Y, Xu H, Shah NH, Banda JM, Schuemie MJ. PMID: 28681416.
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    71. The epidemic dynamics of hepatitis C virus subtypes 4a and 4d in Saudi Arabia. Sci Rep. 2017 03 21; 7:44947. Al-Qahtani AA, Baele G, Khalaf N, Suchard MA, Al-Anazi MR, Abdo AA, Sanai FM, Al-Ashgar HI, Khan MQ, Al-Ahdal MN, Lemey P, Vrancken B. PMID: 28322313.
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    72. Bayesian phylogeography of influenza A/H3N2 for the 2014-15 season in the United States using three frameworks of ancestral state reconstruction. PLoS Comput Biol. 2017 02; 13(2):e1005389. Magee D, Suchard MA, Scotch M. PMID: 28170397.
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    75. 1970s and 'Patient 0' HIV-1 genomes illuminate early HIV/AIDS history in North America. Nature. 2016 11 03; 539(7627):98-101. Worobey M, Watts TD, McKay RA, Suchard MA, Granade T, Teuwen DE, Koblin BA, Heneine W, Lemey P, Jaffe HW. PMID: 27783600.
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    78. Identifying predictors of time-inhomogeneous viral evolutionary processes. Virus Evol. 2016 Jul; 2(2):vew023. Bielejec F, Baele G, Rodrigo AG, Suchard MA, Lemey P. PMID: 27774306.
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    83. Bison phylogeography constrains dispersal and viability of the Ice Free Corridor in western Canada. Proc Natl Acad Sci U S A. 2016 07 19; 113(29):8057-63. Heintzman PD, Froese D, Ives JW, Soares AE, Zazula GD, Letts B, Andrews TD, Driver JC, Hall E, Hare PG, Jass CN, MacKay G, Southon JR, Stiller M, Woywitka R, Suchard MA, Shapiro B. PMID: 27274051.
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    84. SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes. Mol Biol Evol. 2016 08; 33(8):2167-9. Bielejec F, Baele G, Vrancken B, Suchard MA, Rambaut A, Lemey P. PMID: 27189542.
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    88. Contribution of Epidemiological Predictors in Unraveling the Phylogeographic History of HIV-1 Subtype C in Brazil. J Virol. 2015 Dec; 89(24):12341-8. Gräf T, Vrancken B, Maletich Junqueira D, de Medeiros RM, Suchard MA, Lemey P, Esteves de Matos Almeida S, Pinto AR. PMID: 26423943.
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    89. Bayesian Inference Reveals Host-Specific Contributions to the Epidemic Expansion of Influenza A H5N1. Mol Biol Evol. 2015 Dec; 32(12):3264-75. Trovão NS, Suchard MA, Baele G, Gilbert M, Lemey P. PMID: 26341298.
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    90. Disentangling the impact of within-host evolution and transmission dynamics on the tempo of HIV-1 evolution. AIDS. 2015 Jul 31; 29(12):1549-56. Vrancken B, Baele G, Vandamme AM, van Laethem K, Suchard MA, Lemey P. PMID: 26244394.
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    91. Global circulation patterns of seasonal influenza viruses vary with antigenic drift. Nature. 2015 Jul 09; 523(7559):217-20. Bedford T, Riley S, Barr IG, Broor S, Chadha M, Cox NJ, Daniels RS, Gunasekaran CP, Hurt AC, Kelso A, Klimov A, Lewis NS, Li X, McCauley JW, Odagiri T, Potdar V, Rambaut A, Shu Y, Skepner E, Smith DJ, Suchard MA, Tashiro M, Wang D, Xu X, Lemey P, Russell CA. PMID: 26053121.
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    92. ASSESSING PHENOTYPIC CORRELATION THROUGH THE MULTIVARIATE PHYLOGENETIC LATENT LIABILITY MODEL. Ann Appl Stat. 2015 Jun; 9(2):969-991. Cybis GB, Sinsheimer JS, Bedford T, Mather AE, Lemey P, Suchard MA. PMID: 27053974.
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    98. pBUSS: a parallel BEAST/BEAGLE utility for sequence simulation under complex evolutionary scenarios. BMC Bioinformatics. 2014 May 07; 15:133. Bielejec F, Lemey P, Carvalho LM, Baele G, Rambaut A, Suchard MA. PMID: 24885610.
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    100. Air travel is associated with intracontinental spread of dengue virus serotypes 1-3 in Brazil. PLoS Negl Trop Dis. 2014 Apr; 8(4):e2769. Nunes MR, Palacios G, Faria NR, Sousa EC, Pantoja JA, Rodrigues SG, Carvalho VL, Medeiros DB, Savji N, Baele G, Suchard MA, Lemey P, Vasconcelos PF, Lipkin WI. PMID: 24743730.
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    105. Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2. PLoS Pathog. 2014 Feb; 10(2):e1003932. Lemey P, Rambaut A, Bedford T, Faria N, Bielejec F, Baele G, Russell CA, Smith DJ, Pybus OG, Brockmann D, Suchard MA. PMID: 24586153.
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    108. Multiple self-controlled case series for large-scale longitudinal observational databases. Biometrics. 2013 Dec; 69(4):893-902. Simpson SE, Madigan D, Zorych I, Schuemie MJ, Ryan PB, Suchard MA. PMID: 24117144.
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    113. The spread of type 2 Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) in North America: a phylogeographic approach. Virology. 2013 Dec; 447(1-2):146-54. Shi M, Lemey P, Singh Brar M, Suchard MA, Murtaugh MP, Carman S, D'Allaire S, Delisle B, Lambert MÈ, Gagnon CA, Ge L, Qu Y, Yoo D, Holmes EC, Chi-Ching Leung F. PMID: 24210109.
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    115. Interpreting observational studies: why empirical calibration is needed to correct p-values. Stat Med. 2014 Jan 30; 33(2):209-18. Schuemie MJ, Ryan PB, DuMouchel W, Suchard MA, Madigan D. PMID: 23900808.
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    117. Diversity, disparity, and evolutionary rate estimation for unresolved Yule trees. Syst Biol. 2013 May 01; 62(3):439-55. Crawford FW, Suchard MA. PMID: 23417679.
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    119. Graph hierarchies for phylogeography. Philos Trans R Soc Lond B Biol Sci. 2013 Mar 19; 368(1614):20120206. Cybis GB, Sinsheimer JS, Lemey P, Suchard MA. PMID: 23382428.
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    120. Massive parallelization of serial inference algorithms for a complex generalized linear model. ACM Trans Model Comput Simul. 2013 Jan; 23(1). Suchard MA, Simpson SE, Zorych I, Ryan P, Madigan D. PMID: 25328363.
      View in: PubMed   Mentions:
    121. Bayesian selection of nucleotide substitution models and their site assignments. Mol Biol Evol. 2013 Mar; 30(3):669-88. Wu CH, Suchard MA, Drummond AJ. PMID: 23233462.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimalsCells
    122. Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci. Mol Biol Evol. 2013 Mar; 30(3):713-24. Gill MS, Lemey P, Faria NR, Rambaut A, Shapiro B, Suchard MA. PMID: 23180580.
      View in: PubMed   Mentions: 134     Fields:    Translation:HumansCells
    123. Phylogeography of dengue virus serotype 4, Brazil, 2010-2011. Emerg Infect Dis. 2012 Nov; 18(11):1858-64. Nunes MR, Faria NR, Vasconcelos HB, Medeiros DB, Silva de Lima CP, Carvalho VL, Pinto da Silva EV, Cardoso JF, Sousa EC, Nunes KN, Rodrigues SG, Abecasis AB, Suchard MA, Lemey P, Vasconcelos PF. PMID: 23092706.
      View in: PubMed   Mentions: 35     Fields:    Translation:HumansAnimalsCells
    124. Accurate model selection of relaxed molecular clocks in bayesian phylogenetics. Mol Biol Evol. 2013 Feb; 30(2):239-43. Baele G, Li WL, Drummond AJ, Suchard MA, Lemey P. PMID: 23090976.
      View in: PubMed   Mentions: 145     Fields:    Translation:HumansAnimals
    125. A counting renaissance: combining stochastic mapping and empirical Bayes to quickly detect amino acid sites under positive selection. Bioinformatics. 2012 Dec 15; 28(24):3248-56. Lemey P, Minin VN, Bielejec F, Kosakovsky Pond SL, Suchard MA. PMID: 23064000.
      View in: PubMed   Mentions: 34     Fields:    Translation:Cells
    126. Unifying the spatial epidemiology and molecular evolution of emerging epidemics. Proc Natl Acad Sci U S A. 2012 Sep 11; 109(37):15066-71. Pybus OG, Suchard MA, Lemey P, Bernardin FJ, Rambaut A, Crawford FW, Gray RR, Arinaminpathy N, Stramer SL, Busch MP, Delwart EL. PMID: 22927414.
      View in: PubMed   Mentions: 76     Fields:    Translation:HumansCells
    127. Mapping the origins and expansion of the Indo-European language family. Science. 2012 Aug 24; 337(6097):957-60. Bouckaert R, Lemey P, Dunn M, Greenhill SJ, Alekseyenko AV, Drummond AJ, Gray RD, Suchard MA, Atkinson QD. PMID: 22923579.
      View in: PubMed   Mentions: 78     Fields:    Translation:Humans
    128. A novel empirical mutual information approach to identify co-evolving amino acid positions of influenza A viruses. Comput Biol Chem. 2012 Aug; 39:20-8. Gong YN, Chen GW, Suchard MA. PMID: 22858722.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    129. Molecular dating of human-to-bovid host jumps by Staphylococcus aureus reveals an association with the spread of domestication. Biol Lett. 2012 Oct 23; 8(5):829-32. Weinert LA, Welch JJ, Suchard MA, Lemey P, Rambaut A, Fitzgerald JR. PMID: 22628096.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansAnimalsCells
    130. Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty. Mol Biol Evol. 2012 Sep; 29(9):2157-67. Baele G, Lemey P, Bedford T, Rambaut A, Suchard MA, Alekseyenko AV. PMID: 22403239.
      View in: PubMed   Mentions: 297     Fields:    Translation:HumansCells
    131. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol. 2012 Aug; 29(8):1969-73. Drummond AJ, Suchard MA, Xie D, Rambaut A. PMID: 22367748.
      View in: PubMed   Mentions: 2349     Fields:    Translation:AnimalsCells
    132. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 2012 May; 61(3):539-42. Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. PMID: 22357727.
      View in: PubMed   Mentions: 3533     Fields:    
    133. Phylogeography and population dynamics of dengue viruses in the Americas. Mol Biol Evol. 2012 Jun; 29(6):1533-43. Allicock OM, Lemey P, Tatem AJ, Pybus OG, Bennett SN, Mueller BA, Suchard MA, Foster JE, Rambaut A, Carrington CV. PMID: 22319149.
      View in: PubMed   Mentions: 46     Fields:    Translation:HumansCellsPHPublic Health
    134. Phylogeographical footprint of colonial history in the global dispersal of human immunodeficiency virus type 2 group A. J Gen Virol. 2012 Apr; 93(Pt 4):889-899. Faria NR, Hodges-Mameletzis I, Silva JC, Rodés B, Erasmus S, Paolucci S, Ruelle J, Pieniazek D, Taveira N, Treviño A, Gonçalves MF, Jallow S, Xu L, Camacho RJ, Soriano V, Goubau P, de Sousa JD, Vandamme AM, Suchard MA, Lemey P. PMID: 22190015.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansCells
    135. Does history repeat itself? Wavelets and the phylodynamics of influenza A. Mol Biol Evol. 2012 May; 29(5):1367-77. Tom JA, Sinsheimer JS, Suchard MA. PMID: 22160768.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCellsPHPublic Health
    136. Species-specific responses of Late Quaternary megafauna to climate and humans. Nature. 2011 Nov 02; 479(7373):359-64. Lorenzen ED, Nogués-Bravo D, Orlando L, Weinstock J, Binladen J, Marske KA, Ugan A, Borregaard MK, Gilbert MT, Nielsen R, Ho SY, Goebel T, Graf KE, Byers D, Stenderup JT, Rasmussen M, Campos PF, Leonard JA, Koepfli KP, Froese D, Zazula G, Stafford TW, Aaris-Sørensen K, Batra P, Haywood AM, Singarayer JS, Valdes PJ, Boeskorov G, Burns JA, Davydov SP, Haile J, Jenkins DL, Kosintsev P, Kuznetsova T, Lai X, Martin LD, McDonald HG, Mol D, Meldgaard M, Munch K, Stephan E, Sablin M, Sommer RS, Sipko T, Scott E, Suchard MA, Tikhonov A, Willerslev R, Wayne RK, Cooper A, Hofreiter M, Sher A, Shapiro B, Rahbek C, Willerslev E. PMID: 22048313.
      View in: PubMed   Mentions: 106     Fields:    Translation:HumansAnimals
    137. Toward a quantitative understanding of viral phylogeography. Curr Opin Virol. 2011 Nov; 1(5):423-9. Faria NR, Suchard MA, Rambaut A, Lemey P. PMID: 22440846.
      View in: PubMed   Mentions: 27     Fields:    Translation:HumansAnimalsCells
    138. Transition probabilities for general birth-death processes with applications in ecology, genetics, and evolution. J Math Biol. 2012 Sep; 65(3):553-80. Crawford FW, Suchard MA. PMID: 21984359.
      View in: PubMed   Mentions: 13     Fields:    
    139. BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics. Syst Biol. 2012 Jan; 61(1):170-3. Ayres DL, Darling A, Zwickl DJ, Beerli P, Holder MT, Lewis PO, Huelsenbeck JP, Ronquist F, Swofford DL, Cummings MP, Rambaut A, Suchard MA. PMID: 21963610.
      View in: PubMed   Mentions: 134     Fields:    
    140. SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics. Bioinformatics. 2011 Oct 15; 27(20):2910-2. Bielejec F, Rambaut A, Suchard MA, Lemey P. PMID: 21911333.
      View in: PubMed   Mentions: 149     Fields:    
    141. A Bayesian model for the common effects of multiple predictors on mixed outcomes. Interface Focus. 2011 Dec 06; 1(6):886-94. Weiss RE, Jia J, Suchard MA. PMID: 22419987.
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    142. Ancient hybridization and an Irish origin for the modern polar bear matriline. Curr Biol. 2011 Aug 09; 21(15):1251-8. Edwards CJ, Suchard MA, Lemey P, Welch JJ, Barnes I, Fulton TL, Barnett R, O'Connell TC, Coxon P, Monaghan N, Valdiosera CE, Lorenzen ED, Willerslev E, Baryshnikov GF, Rambaut A, Thomas MG, Bradley DG, Shapiro B. PMID: 21737280.
      View in: PubMed   Mentions: 72     Fields:    Translation:AnimalsCells
    143. Spatial dynamics of human-origin H1 influenza A virus in North American swine. PLoS Pathog. 2011 Jun; 7(6):e1002077. Nelson MI, Lemey P, Tan Y, Vincent A, Lam TT, Detmer S, Viboud C, Suchard MA, Rambaut A, Holmes EC, Gramer M. PMID: 21695237.
      View in: PubMed   Mentions: 38     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    144. Phylodynamics of the HIV-1 CRF02_AG clade in Cameroon. Infect Genet Evol. 2012 Mar; 12(2):453-60. Faria NR, Suchard MA, Abecasis A, Sousa JD, Ndembi N, Bonfim I, Camacho RJ, Vandamme AM, Lemey P. PMID: 21565285.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansCells
    145. Biologically inspired phylogenetic models strongly outperform the no common mechanism model. Syst Biol. 2011 Mar; 60(2):225-32. Huelsenbeck JP, Alfaro ME, Suchard MA. PMID: 21252385.
      View in: PubMed   Mentions: 4     Fields:    
    146. Modeling Protein Expression and Protein Signaling Pathways. J Am Stat Assoc. 2011; 107(500):1372-1384. Telesca D, Müller P, Kornblau SM, Suchard MA, Ji Y. PMID: 26246646.
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    147. Impact of CCR5delta32 host genetic background and disease progression on HIV-1 intrahost evolutionary processes: efficient hypothesis testing through hierarchical phylogenetic models. Mol Biol Evol. 2011 May; 28(5):1605-16. Edo-Matas D, Lemey P, Tom JA, Serna-Bolea C, van den Blink AE, van 't Wout AB, Schuitemaker H, Suchard MA. PMID: 21135151.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansCells
    148. Testing spatiotemporal hypothesis of bacterial evolution using methicillin-resistant Staphylococcus aureus ST239 genome-wide data within a bayesian framework. Mol Biol Evol. 2011 May; 28(5):1593-603. Gray RR, Tatem AJ, Johnson JA, Alekseyenko AV, Pybus OG, Suchard MA, Salemi M. PMID: 21112962.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansCells
    149. Phylodynamics and human-mediated dispersal of a zoonotic virus. PLoS Pathog. 2010 Oct 28; 6(10):e1001166. Talbi C, Lemey P, Suchard MA, Abdelatif E, Elharrak M, Nourlil J, Jalal N, Faouzi A, Echevarría JE, Vazquez Morón S, Rambaut A, Campiz N, Tatem AJ, Holmes EC, Bourhy H. PMID: 21060816.
      View in: PubMed   Mentions: 51     Fields:    Translation:HumansAnimalsCells
    150. A Bayesian phylogenetic method to estimate unknown sequence ages. Mol Biol Evol. 2011 Feb; 28(2):879-87. Shapiro B, Ho SY, Drummond AJ, Suchard MA, Pybus OG, Rambaut A. PMID: 20889726.
      View in: PubMed   Mentions: 48     Fields:    Translation:AnimalsCells
    151. Three roads diverged? Routes to phylogeographic inference. Trends Ecol Evol. 2010 Nov; 25(11):626-32. Bloomquist EW, Lemey P, Suchard MA. PMID: 20863591.
      View in: PubMed   Mentions: 24     Fields:    Translation:Animals
    152. Bayesian random local clocks, or one rate to rule them all. BMC Biol. 2010 Aug 31; 8:114. Drummond AJ, Suchard MA. PMID: 20807414.
      View in: PubMed   Mentions: 94     Fields:    Translation:Animals
    153. Yellow fever virus maintenance in Trinidad and its dispersal throughout the Americas. J Virol. 2010 Oct; 84(19):9967-77. Auguste AJ, Lemey P, Pybus OG, Suchard MA, Salas RA, Adesiyun AA, Barrett AD, Tesh RB, Weaver SC, Carrington CV. PMID: 20631128.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansAnimalsCells
    154. Understanding GPU Programming for Statistical Computation: Studies in Massively Parallel Massive Mixtures. J Comput Graph Stat. 2010 Jun 01; 19(2):419-438. Suchard MA, Wang Q, Chan C, Frelinger J, Cron A, West M. PMID: 20877443.
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    155. Evolution and recombination of genes encoding HIV-1 drug resistance and tropism during antiretroviral therapy. Virology. 2010 Aug 15; 404(1):5-20. Shi B, Kitchen C, Weiser B, Mayers D, Foley B, Kemal K, Anastos K, Suchard M, Parker M, Brunner C, Burger H. PMID: 20451945.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    156. Using time-structured data to estimate evolutionary rates of double-stranded DNA viruses. Mol Biol Evol. 2010 Sep; 27(9):2038-51. Firth C, Kitchen A, Shapiro B, Suchard MA, Holmes EC, Rambaut A. PMID: 20363828.
      View in: PubMed   Mentions: 86     Fields:    Translation:Cells
    157. Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus) population dynamics. Proc Natl Acad Sci U S A. 2010 Mar 23; 107(12):5675-80. Campos PF, Willerslev E, Sher A, Orlando L, Axelsson E, Tikhonov A, Aaris-Sørensen K, Greenwood AD, Kahlke RD, Kosintsev P, Krakhmalnaya T, Kuznetsova T, Lemey P, MacPhee R, Norris CA, Shepherd K, Suchard MA, Zazula GD, Shapiro B, Gilbert MT. PMID: 20212118.
      View in: PubMed   Mentions: 38     Fields:    Translation:HumansAnimals
    158. Phylogeography takes a relaxed random walk in continuous space and time. Mol Biol Evol. 2010 Aug; 27(8):1877-85. Lemey P, Rambaut A, Welch JJ, Suchard MA. PMID: 20203288.
      View in: PubMed   Mentions: 146     Fields:    Translation:AnimalsPHPublic Health
    159. Reuse, Recycle, Reweigh: Combating Influenza through Efficient Sequential Bayesian Computation for Massive Data. Ann Appl Stat. 2010; 4(4):1722-1748. Tom JA, Sinsheimer JS, Suchard MA. PMID: 26681992.
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    160. Unifying vertical and nonvertical evolution: a stochastic ARG-based framework. Syst Biol. 2010 Jan; 59(1):27-41. Bloomquist EW, Suchard MA. PMID: 20525618.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    161. Bayesian phylogeography finds its roots. PLoS Comput Biol. 2009 Sep; 5(9):e1000520. Lemey P, Rambaut A, Drummond AJ, Suchard MA. PMID: 19779555.
      View in: PubMed   Mentions: 497     Fields:    Translation:HumansAnimalsCells
    162. Reconstructing the initial global spread of a human influenza pandemic: A Bayesian spatial-temporal model for the global spread of H1N1pdm. PLoS Curr. 2009 Sep 02; 1:RRN1031. Lemey P, Suchard M, Rambaut A. PMID: 20029613.
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    163. Improving phylogenetic analyses by incorporating additional information from genetic sequence databases. Bioinformatics. 2009 Oct 01; 25(19):2530-6. Liang LJ, Weiss RE, Redelings B, Suchard MA. PMID: 19661240.
      View in: PubMed   Mentions: 3     Fields:    
    164. Many-core algorithms for statistical phylogenetics. Bioinformatics. 2009 Jun 01; 25(11):1370-6. Suchard MA, Rambaut A. PMID: 19369496.
      View in: PubMed   Mentions: 128     Fields:    
    165. Two-way Bayesian hierarchical phylogenetic models: An application to the co-evolution of gp120 and gp41 during and after enfuvirtide treatment. Comput Stat Data Anal. 2009 Jan 15; 53(3):766-775. Kitchen CM, Kroll J, Kuritzkes DR, Bloomquist E, Deeks SG, Suchard MA. PMID: 20442796.
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    166. Learning to count: robust estimates for labeled distances between molecular sequences. Mol Biol Evol. 2009 Apr; 26(4):801-14. O'Brien JD, Minin VN, Suchard MA. PMID: 19131426.
      View in: PubMed   Mentions: 49     Fields:    Translation:Cells
    167. Fast, accurate and simulation-free stochastic mapping. Philos Trans R Soc Lond B Biol Sci. 2008 Dec 27; 363(1512):3985-95. Minin VN, Suchard MA. PMID: 18852111.
      View in: PubMed   Mentions: 48     Fields:    
    168. Fully Bayesian tests of neutrality using genealogical summary statistics. BMC Genet. 2008 Oct 31; 9:68. Drummond AJ, Suchard MA. PMID: 18976476.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    169. Wagner and Dollo: a stochastic duet by composing two parsimonious solos. Syst Biol. 2008 Oct; 57(5):772-84. Alekseyenko AV, Lee CJ, Suchard MA. PMID: 18853363.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansAnimalsCells
    170. StepBrothers: inferring partially shared ancestries among recombinant viral sequences. Biostatistics. 2009 Jan; 10(1):106-20. Bloomquist EW, Dorman KS, Suchard MA. PMID: 18562348.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    171. Dating the time of viral subtype divergence. BMC Evol Biol. 2008 Jun 09; 8:172. O'Brien JD, She ZS, Suchard MA. PMID: 18541033.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    172. Pomegranate juice and extracts provide similar levels of plasma and urinary ellagitannin metabolites in human subjects. J Med Food. 2008 Jun; 11(2):390-4. Seeram NP, Zhang Y, McKeever R, Henning SM, Lee RP, Suchard MA, Li Z, Chen S, Thames G, Zerlin A, Nguyen M, Wang D, Dreher M, Heber D. PMID: 18598186.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansAnimals
    173. Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics. Mol Biol Evol. 2008 Jul; 25(7):1459-71. Minin VN, Bloomquist EW, Suchard MA. PMID: 18408232.
      View in: PubMed   Mentions: 236     Fields:    Translation:HumansCells
    174. Alignment uncertainty and genomic analysis. Science. 2008 Jan 25; 319(5862):473-6. Wong KM, Suchard MA, Huelsenbeck JP. PMID: 18218900.
      View in: PubMed   Mentions: 118     Fields:    Translation:AnimalsCells
    175. Representational oligonucleotide microarray analysis (ROMA) and comparison of binning and change-point methods of analysis: application to detection of del22q11.2 (DiGeorge) syndrome. Hum Mutat. 2008 Jan; 29(1):176-81. Stanczak CM, Chen Z, Nelson SF, Suchard M, McCabe ER, McGhee S. PMID: 17694540.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    176. A nonparametric method for accommodating and testing across-site rate variation. Syst Biol. 2007 Dec; 56(6):975-87. Huelsenbeck JP, Suchard MA. PMID: 18075934.
      View in: PubMed   Mentions: 17     Fields:    
    177. Validation of candidate serum ovarian cancer biomarkers for early detection. Biomark Insights. 2007 Oct 16; 2:369-75. Su F, Lang J, Kumar A, Ng C, Hsieh B, Suchard MA, Reddy ST, Farias-Eisner R. PMID: 19662218.
      View in: PubMed   Mentions:
    178. Counting labeled transitions in continuous-time Markov models of evolution. J Math Biol. 2008 Mar; 56(3):391-412. Minin VN, Suchard MA. PMID: 17874105.
      View in: PubMed   Mentions: 100     Fields:    
    179. Development of an advanced electrochemical DNA biosensor for bacterial pathogen detection. J Mol Diagn. 2007 Apr; 9(2):158-68. Liao JC, Mastali M, Li Y, Gau V, Suchard MA, Babbitt J, Gornbein J, Landaw EM, McCabe ER, Churchill BM, Haake DA. PMID: 17384207.
      View in: PubMed   Mentions: 24     Fields:    Translation:Cells
    180. Incorporating indel information into phylogeny estimation for rapidly emerging pathogens. BMC Evol Biol. 2007 Mar 14; 7:40. Redelings BD, Suchard MA. PMID: 17359539.
      View in: PubMed   Mentions: 22     Fields:    Translation:Cells
    181. Phylogenetic mapping of recombination hotspots in human immunodeficiency virus via spatially smoothed change-point processes. Genetics. 2007 Apr; 175(4):1773-85. Minin VN, Dorman KS, Fang F, Suchard MA. PMID: 17194781.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimalsCells
    182. cBrother: relaxing parental tree assumptions for Bayesian recombination detection. Bioinformatics. 2007 Feb 15; 23(4):507-8. Fang F, Ding J, Minin VN, Suchard MA, Dorman KS. PMID: 17145740.
      View in: PubMed   Mentions: 8     Fields:    Translation:Cells
    183. Continued evolution in gp41 after interruption of enfuvirtide in subjects with advanced HIV type 1 disease. AIDS Res Hum Retroviruses. 2006 Dec; 22(12):1260-6. Kitchen CM, Lu J, Suchard MA, Hoh R, Martin JN, Kuritzkes DR, Deeks SG. PMID: 17209769.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    184. Time squared: repeated measures on phylogenies. Mol Biol Evol. 2007 Feb; 24(2):352-62. Guo H, Weiss RE, Gu X, Suchard MA. PMID: 17079699.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimals
    185. Pomegranate juice ellagitannin metabolites are present in human plasma and some persist in urine for up to 48 hours. J Nutr. 2006 Oct; 136(10):2481-5. Seeram NP, Henning SM, Zhang Y, Suchard M, Li Z, Heber D. PMID: 16988113.
      View in: PubMed   Mentions: 79     Fields:    Translation:HumansAnimals
    186. Modeling of the temporal patterns of fluoxetine prescriptions and suicide rates in the United States. PLoS Med. 2006 Jun; 3(6):e190. Milane MS, Suchard MA, Wong ML, Licinio J. PMID: 16768544.
      View in: PubMed   Mentions: 22     Fields:    Translation:Humans
    187. BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny. Bioinformatics. 2006 Aug 15; 22(16):2047-8. Suchard MA, Redelings BD. PMID: 16679334.
      View in: PubMed   Mentions: 67     Fields:    Translation:Cells
    188. Models for estimating bayes factors with applications to phylogeny and tests of monophyly. Biometrics. 2005 Sep; 61(3):665-73. Suchard MA, Weiss RE, Sinsheimer JS. PMID: 16135017.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansCells
    189. Joint Bayesian estimation of alignment and phylogeny. Syst Biol. 2005 Jun; 54(3):401-18. Redelings BD, Suchard MA. PMID: 16012107.
      View in: PubMed   Mentions: 76     Fields:    Translation:Cells
    190. Dual multiple change-point model leads to more accurate recombination detection. Bioinformatics. 2005 Jul 01; 21(13):3034-42. Minin VN, Dorman KS, Fang F, Suchard MA. PMID: 15914546.
      View in: PubMed   Mentions: 54     Fields:    
    191. Stochastic models for horizontal gene transfer: taking a random walk through tree space. Genetics. 2005 May; 170(1):419-31. Suchard MA. PMID: 15781714.
      View in: PubMed   Mentions: 16     Fields:    Translation:Cells
    192. Bayesian estimation of recent migration rates after a spatial expansion. Genetics. 2005 May; 170(1):409-17. Hamilton G, Currat M, Ray N, Heckel G, Beaumont M, Excoffier L. PMID: 15716508.
      View in: PubMed   Mentions: 30     Fields:    Translation:AnimalsCells
    193. Early nodal response as a predictor for necessity of functional neck dissection after chemoradiation. Cancer J. 2004 Nov-Dec; 10(6):339-42. Vongtama R, Lee M, Kim B, Sercarz J, Lin K, Suchard MA, Lee SP, Juillard G. PMID: 15701264.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    194. Evolution of human immunodeficiency virus type 1 coreceptor usage during antiretroviral Therapy: a Bayesian approach. J Virol. 2004 Oct; 78(20):11296-302. Kitchen CM, Philpott S, Burger H, Weiser B, Anastos K, Suchard MA. PMID: 15452249.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCellsCTClinical Trials
    195. Alterations in the dynamics of circulating ghrelin, adiponectin, and leptin in human obesity. Proc Natl Acad Sci U S A. 2004 Jul 13; 101(28):10434-9. Yildiz BO, Suchard MA, Wong ML, McCann SM, Licinio J. PMID: 15231997.
      View in: PubMed   Mentions: 84     Fields:    Translation:HumansCells
    196. Hierarchical phylogenetic models for analyzing multipartite sequence data. Syst Biol. 2003 Oct; 52(5):649-64. Suchard MA, Kitchen CM, Sinsheimer JS, Weiss RE. PMID: 14530132.
      View in: PubMed   Mentions: 40     Fields:    Translation:HumansAnimalsCells
    197. Interplay of chemotaxis and chemokinesis mechanisms in bacterial dynamics. Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Aug; 68(2 Pt 1):021925. D'Orsogna MR, Suchard MA, Chou T. PMID: 14525024.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    198. Testing a molecular clock without an outgroup: derivations of induced priors on branch-length restrictions in a Bayesian framework. Syst Biol. 2003 Feb; 52(1):48-54. Suchard MA, Weiss RE, Sinsheimer JS. PMID: 12554439.
      View in: PubMed   Mentions: 6     Fields:    Translation:Animals
    199. Are you my mother? Bayesian phylogenetic inference of recombination among putative parental strains. Appl Bioinformatics. 2003; 2(3):131-44. Sinsheimer JS, Suchard MA, Dorman KS, Fang F, Weiss RE. PMID: 15130798.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    200. Oh brother, where art thou? A Bayes factor test for recombination with uncertain heritage. Syst Biol. 2002 Oct; 51(5):715-28. Suchard MA, Weiss RE, Dorman KS, Sinsheimer JS. PMID: 12396586.
      View in: PubMed   Mentions: 13     Fields:    Translation:Cells
    201. General practitioners' views on genetic screening for common diseases. Br J Gen Pract. 1999 Jan; 49(438):45-6. Suchard MA, Yudkin P, Sinsheimer JS, Fowler GH. PMID: 10622017.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
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