Marc Adam Suchard

Title(s)Professor, Human Genetics
SchoolMedicine
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    Other Positions
    Title(s)Professor, Computational Medicine


    Collapse Biography 
    Collapse Education and Training
    University of California, Los AngelesPhD2002Biomathematics
    University of California, Los AngelesMD2004

    Collapse Overview 

    Collapse Research 
    Collapse Research Activities and Funding
    Statistical innovation to integrate sequences and phenotypes for scalable phylodynamic inference
    NIH R01AI153044Apr 9, 2021 - Mar 31, 2025
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Phylogenetic tree instability after taxon addition: empirical frequency, predictability, and consequences for online inference. Syst Biol. 2024 Oct 25. Collienne L, Barker M, Suchard MA, Matsen Iv FA. PMID: 39453463.
      View in: PubMed   Mentions:    Fields:    
    2. Emergence of the B.1.214.2 SARS-CoV-2 lineage with an Omicron-like spike insertion and a unique upper airway immune signature. BMC Infect Dis. 2024 Oct 10; 24(1):1139. Holtz A, Van Weyenbergh J, Hong SL, Cuypers L, O'Toole Á, Dudas G, Gerdol M, Potter BI, Ntoumi F, Mapanguy CCM, Vanmechelen B, Wawina-Bokalanga T, Van Holm B, Menezes SM, Soubotko K, Van Pottelbergh G, Wollants E, Vermeersch P, Jacob AS, Maes B, Obbels D, Matheeussen V, Martens G, Gras J, Verhasselt B, Laffut W, Vael C, Goegebuer T, van der Kant R, Rousseau F, Schymkowitz J, Serrano L, Delgado J, Wenseleers T, Bours V, André E, Suchard MA, Rambaut A, Dellicour S, Maes P, Durkin K, Baele G. PMID: 39390446; PMCID: PMC11468156.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    3. Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic. Cell. 2024 Sep 19; 187(19):5468-5482.e11. Crits-Christoph A, Levy JI, Pekar JE, Goldstein SA, Singh R, Hensel Z, Gangavarapu K, Rogers MB, Moshiri N, Garry RF, Holmes EC, Koopmans MPG, Lemey P, Peacock TP, Popescu S, Rambaut A, Robertson DL, Suchard MA, Wertheim JO, Rasmussen AL, Andersen KG, Worobey M, Débarre F. PMID: 39303692; PMCID: PMC11427129.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    4. Random-Effects Substitution Models for Phylogenetics via Scalable Gradient Approximations. Syst Biol. 2024 Sep 05; 73(3):562-578. Magee AF, Holbrook AJ, Pekar JE, Caviedes-Solis IW, Matsen Iv FA, Baele G, Wertheim JO, Ji X, Lemey P, Suchard MA. PMID: 38712512; PMCID: PMC11498053.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    5. Farmed fur animals harbour viruses with zoonotic spillover potential. Nature. 2024 Oct; 634(8032):228-233. Zhao J, Wan W, Yu K, Lemey P, Pettersson JH, Bi Y, Lu M, Li X, Chen Z, Zheng M, Yan G, Dai J, Li Y, Haerheng A, He N, Tu C, Suchard MA, Holmes EC, He WT, Su S. PMID: 39232170.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    6. Comparative Effectiveness of Second-Line Antihyperglycemic Agents for Cardiovascular Outcomes: A Multinational, Federated Analysis of LEGEND-T2DM. J Am Coll Cardiol. 2024 Sep 03; 84(10):904-917. Khera R, Aminorroaya A, Dhingra LS, Thangaraj PM, Pedroso Camargos A, Bu F, Ding X, Nishimura A, Anand TV, Arshad F, Blacketer C, Chai Y, Chattopadhyay S, Cook M, Dorr DA, Duarte-Salles T, DuVall SL, Falconer T, French TE, Hanchrow EE, Kaur G, Lau WCY, Li J, Li K, Liu Y, Lu Y, Man KKC, Matheny ME, Mathioudakis N, McLeggon JA, McLemore MF, Minty E, Morales DR, Nagy P, Ostropolets A, Pistillo A, Phan TP, Pratt N, Reyes C, Richter L, Ross JS, Ruan E, Seager SL, Simon KR, Viernes B, Yang J, Yin C, You SC, Zhou JJ, Ryan PB, Schuemie MJ, Krumholz HM, Hripcsak G, Suchard MA. PMID: 39197980.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    7. On the importance of assessing topological convergence in Bayesian phylogenetic inference. ArXiv. 2024 Aug 19. Brusselmans M, Carvalho LM, Hong SL, Gao J, Matsen FA, Rambaut A, Lemey P, Suchard MA, Dudas G, Baele G. PMID: 39253641; PMCID: PMC11383445.
      View in: PubMed   Mentions:
    8. Genomic epidemiology reveals 2022 mpox epidemic in New York City governed by heavy-tailed sexual contact networks. medRxiv. 2024 Aug 01. Pekar JE, Wang Y, Wang JC, Shao Y, Taki F, Forgione LA, Amin H, Clabby T, Johnson K, Torian LV, Braunstein SL, Pathela P, Omoregie E, Hughes S, Suchard MA, Vasylyeva TI, Lemey P, Wertheim JO. PMID: 39132479; PMCID: PMC11312668.
      View in: PubMed   Mentions:
    9. Dispersal history of SARS-CoV-2 variants Alpha, Delta, and Omicron (BA.1) in Spain. medRxiv. 2024 Jul 01. Gallego-García P, Hong SL, Bollen N, Dellicour S, Baele G, Suchard MA, Lemey P, Posada D. PMID: 39006420; PMCID: PMC11245079.
      View in: PubMed   Mentions:
    10. Dispersal history of SARS-CoV-2 in Galicia, Spain. J Med Virol. 2024 Jul; 96(7):e29773. Gallego-García P, Estévez-Gómez N, De Chiara L, Alvariño P, Juiz-González PM, Torres-Beceiro I, Poza M, Vallejo JA, Rumbo-Feal S, Conde-Pérez K, Aja-Macaya P, Ladra S, Moreno-Flores A, Gude-González MJ, Coira A, Aguilera A, Costa-Alcalde JJ, Trastoy R, Barbeito-Castiñeiras G, García-Souto D, Tubio JMC, Trigo-Daporta M, Camacho-Zamora P, Costa JG, González-Domínguez M, Canoura-Fernández L, Glez-Peña D, Pérez-Castro S, Cabrera JJ, Daviña-Núñez C, Godoy-Diz M, Treinta-Álvarez AB, Veiga MI, Sousa JC, Osório NS, Comas I, González-Candelas F, Hong SL, Bollen N, Dellicour S, Baele G, Suchard MA, Lemey P, Agulla A, Bou G, Alonso-García P, Pérez-Del-Molino ML, García-Campello M, Paz-Vidal I, Regueiro B, Posada D. PMID: 38940448.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCellsPHPublic Health
    11. Comparing penalization methods for linear models on large observational health data. J Am Med Inform Assoc. 2024 Jun 20; 31(7):1514-1521. Fridgeirsson EA, Williams R, Rijnbeek P, Suchard MA, Reps JM. PMID: 38767857; PMCID: PMC11187433.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    12. Molecular epidemiology of recurrent zoonotic transmission of mpox virus in West Africa. medRxiv. 2024 Jun 19. Djuicy DD, Omah IF, Parker E, Tomkins-Tinch CH, Otieno JR, Yifomnjou MHM, Essengue LLM, Ayinla AO, Sijuwola AE, Ahmed MI, Ope-Ewe OO, Ogunsanya OA, Olono A, Eromon P, Yonga MGW, Essima GD, Touoyem IP, Mounchili LJM, Eyangoh SI, Esso L, Nguidjol IME, Metomb SF, Chebo C, Agwe SM, Mossi HM, Bilounga CN, Etoundi AGM, Akanbi O, Egwuenu A, Ehiakhamen O, Chukwu C, Suleiman K, Akinpelu A, Ahmad A, Imam KI, Ojedele R, Oripenaye V, Ikeata K, Adelakun S, Olajumoke B, O'Toole Á, Magee A, Zeller M, Gangavarapu K, Varilly P, Park DJ, Mboowa G, Tessema SK, Tebeje YK, Folarin O, Happi A, Lemey P, Suchard MA, Andersen KG, Sabeti P, Rambaut A, Ihekweazu C, Jide I, Adetifa I, Njoum R, Happi CT. PMID: 38947021; PMCID: PMC11213044.
      View in: PubMed   Mentions:
    13. Genomic epidemiology uncovers the timing and origin of the emergence of mpox in humans. medRxiv. 2024 Jun 19. Parker E, Omah IF, Varilly P, Magee A, Ayinla AO, Sijuwola AE, Ahmed MI, Ope-Ewe OO, Ogunsanya OA, Olono A, Eromon P, Tomkins-Tinch CH, Otieno JR, Akanbi O, Egwuenu A, Ehiakhamen O, Chukwu C, Suleiman K, Akinpelu A, Ahmad A, Imam KI, Ojedele R, Oripenaye V, Ikeata K, Adelakun S, Olajumoke B, Djuicy DD, Essengue LLM, Yifomnjou MHM, Zeller M, Gangavarapu K, O'Toole Á, Park DJ, Mboowa G, Tessema SK, Tebeje YK, Folarin O, Happi A, Lemey P, Suchard MA, Andersen KG, Sabeti P, Rambaut A, Njoum R, Ihekweazu C, Jide I, Adetifa I, Happi CT. PMID: 38947052; PMCID: PMC11213064.
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    14. Zoonotic infections by avian influenza virus: changing global epidemiology, investigation, and control. Lancet Infect Dis. 2024 Aug; 24(8):e522-e531. Kang M, Wang LF, Sun BW, Wan WB, Ji X, Baele G, Bi YH, Suchard MA, Lai A, Zhang M, Wang L, Zhu YH, Ma L, Li HP, Haerheng A, Qi YR, Wang RL, He N, Su S. PMID: 38878787.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    15. Modeling the velocity of evolving lineages and predicting dispersal patterns. bioRxiv. 2024 Jun 06. Bastide P, Rocu P, Wirtz J, Hassler GW, Chevenet F, Fargette D, Suchard MA, Dellicour S, Lemey P, Guindon S. PMID: 38895258; PMCID: PMC11185746.
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    16. spread.gl: visualising pathogen dispersal in a high-performance browser application. medRxiv. 2024 Jun 05. Li Y, Bollen N, Hong SL, Brusselmans M, Gámbaro F, Suchard MA, Rambaut A, Lemey P, Dellicour S, Baele G. PMID: 38883783; PMCID: PMC11177906.
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    17. How fast are viruses spreading in the wild? bioRxiv. 2024 May 23. Dellicour S, Bastide P, Rocu P, Fargette D, Hardy OJ, Suchard MA, Guindon S, Lemey P. PMID: 38645268; PMCID: PMC11030353.
      View in: PubMed   Mentions:
    18. Computational Phenomapping of Randomized Clinical Trials to Enable Assessment of their Real-world Representativeness and Personalized Inference. medRxiv. 2024 May 16. Thangaraj PM, Oikonomou EK, Dhingra LS, Aminorroaya A, Jayaram R, Suchard MA, Khera R. PMID: 38798457; PMCID: PMC11118629.
      View in: PubMed   Mentions:
    19. Assessing Covariate Balance with Small Sample Sizes. medRxiv. 2024 Apr 24. Hripcsak G, Zhang L, Li K, Suchard MA, Ryan PB, Schuemie MJ. PMID: 38712282; PMCID: PMC11071580.
      View in: PubMed   Mentions:
    20. The genomic evolutionary dynamics and global circulation patterns of respiratory syncytial virus. Nat Commun. 2024 Apr 10; 15(1):3083. Langedijk AC, Vrancken B, Lebbink RJ, Wilkins D, Kelly EJ, Baraldi E, Mascareñas de Los Santos AH, Danilenko DM, Choi EH, Palomino MA, Chi H, Keller C, Cohen R, Papenburg J, Pernica J, Greenough A, Richmond P, Martinón-Torres F, Heikkinen T, Stein RT, Hosoya M, Nunes MC, Verwey C, Evers A, Kragten-Tabatabaie L, Suchard MA, Kosakovsky Pond SL, Poletto C, Colizza V, Lemey P, Bont LJ, INFORM-RSV Study Group. PMID: 38600104; PMCID: PMC11006891.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    21. Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models. PLoS Comput Biol. 2024 Mar; 20(3):e1011640. Shao Y, Magee AF, Vasylyeva TI, Suchard MA. PMID: 38551979; PMCID: PMC11006205.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCellsPHPublic Health
    22. Similar Risk of Kidney Failure among Patients with Blinding Diseases Who Receive Ranibizumab, Aflibercept, and Bevacizumab: An Observational Health Data Sciences and Informatics Network Study. Ophthalmol Retina. 2024 Aug; 8(8):733-743. Cai CX, Nishimura A, Bowring MG, Westlund E, Tran D, Ng JH, Nagy P, Cook M, McLeggon JA, DuVall SL, Matheny ME, Golozar A, Ostropolets A, Minty E, Desai P, Bu F, Toy B, Hribar M, Falconer T, Zhang L, Lawrence-Archer L, Boland MV, Goetz K, Hall N, Shoaibi A, Reps J, Sena AG, Blacketer C, Swerdel J, Jhaveri KD, Lee E, Gilbert Z, Zeger SL, Crews DC, Suchard MA, Hripcsak G, Ryan PB. PMID: 38519026; PMCID: PMC11298306.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    23. Comparative safety and effectiveness of angiotensin converting enzyme inhibitors and thiazides and thiazide-like diuretics under strict monotherapy. J Clin Hypertens (Greenwich). 2024 Apr; 26(4):425-430. Anand TV, Bu F, Schuemie MJ, Suchard MA, Hripcsak G. PMID: 38501749; PMCID: PMC11007801.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    24. Integrating dynamical modeling and phylogeographic inference to characterize global influenza circulation. medRxiv. 2024 Mar 15. Parino F, Gustani-Buss E, Bedford T, Suchard MA, Trovão NS, Rambaut A, Colizza V, Poletto C, Lemey P. PMID: 38559244; PMCID: PMC10980132.
      View in: PubMed   Mentions:
    25. Authors' Response to Huang et al.'s Comment on "Serially Combining Epidemiological Designs Does Not Improve Overall Signal Detection in Vaccine Safety Surveillance". Drug Saf. 2024 Apr; 47(4):403-404. Bu F, Arshad F, Hripcsak G, Ryan PB, Schuemie MJ, Suchard MA. PMID: 38441750.
      View in: PubMed   Mentions:    Fields:    
    26. Dispersal history of SARS-CoV-2 in Galicia, Spain. medRxiv. 2024 Feb 28. Gallego-García P, Estévez-Gómez N, De Chiara L, Alvariño P, Juiz-González PM, Torres-Beceiro I, Poza M, Vallejo JA, Rumbo-Feal S, Conde-Pérez K, Aja-Macaya P, Ladra S, Moreno-Flores A, Gude-González MJ, Coira A, Aguilera A, Costa-Alcalde JJ, Trastoy R, Barbeito-Castiñeiras G, García-Souto D, Tubio JMC, Trigo-Daporta M, Camacho-Zamora P, Costa JG, González-Domínguez M, Canoura-Fernández L, Glez-Peña D, Pérez-Castro S, Cabrera JJ, Daviña-Núñez C, Godoy-Diz M, Treinta-Álvarez AB, Veiga MI, Sousa JC, Osório NS, Comas I, González-Candelas F, Hong SL, Bollen N, Dellicour S, Baele G, Suchard MA, Lemey P, Agulla A, Bou G, Alonso-García P, Pérez-Del-Molino ML, García-Campello M, Paz-Vidal I, Regueiro B, Posada D. PMID: 38463998; PMCID: PMC10925372.
      View in: PubMed   Mentions:
    27. Comparative Effectiveness of Second-line Antihyperglycemic Agents for Cardiovascular Outcomes: A Large-scale, Multinational, Federated Analysis of the LEGEND-T2DM Study. medRxiv. 2024 Feb 08. Khera R, Aminorroaya A, Dhingra LS, Thangaraj PM, Camargos AP, Bu F, Ding X, Nishimura A, Anand TV, Arshad F, Blacketer C, Chai Y, Chattopadhyay S, Cook M, Dorr DA, Duarte-Salles T, DuVall SL, Falconer T, French TE, Hanchrow EE, Kaur G, Lau WC, Li J, Li K, Liu Y, Lu Y, Man KK, Matheny ME, Mathioudakis N, McLeggon JA, McLemore MF, Minty E, Morales DR, Nagy P, Ostropolets A, Pistillo A, Phan TP, Pratt N, Reyes C, Richter L, Ross J, Ruan E, Seager SL, Simon KR, Viernes B, Yang J, Yin C, You SC, Zhou JJ, Ryan PB, Schuemie MJ, Krumholz HM, Hripcsak G, Suchard MA. PMID: 38370787; PMCID: PMC10871374.
      View in: PubMed   Mentions:
    28. Many-core algorithms for high-dimensional gradients on phylogenetic trees. Bioinformatics. 2024 02 01; 40(2). Gangavarapu K, Ji X, Baele G, Fourment M, Lemey P, Matsen FA, Suchard MA. PMID: 38243701; PMCID: PMC10868298.
      View in: PubMed   Mentions: 2     Fields:    
    29. Health-Analytics Data to Evidence Suite (HADES): Open-Source Software for Observational Research. Stud Health Technol Inform. 2024 Jan 25; 310:966-970. Schuemie M, Reps J, Black A, Defalco F, Evans L, Fridgeirsson E, Gilbert JP, Knoll C, Lavallee M, Rao GA, Rijnbeek P, Sadowski K, Sena A, Swerdel J, Williams RD, Suchard M. PMID: 38269952; PMCID: PMC10868467.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    30. On the surprising effectiveness of a simple matrix exponential derivative approximation, with application to global SARS-CoV-2. Proc Natl Acad Sci U S A. 2024 Jan 16; 121(3):e2318989121. Didier G, Glatt-Holtz NE, Holbrook AJ, Magee AF, Suchard MA. PMID: 38215186; PMCID: PMC10801879.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    31. Genomic surveillance reveals dynamic shifts in the connectivity of COVID-19 epidemics. Cell. 2023 12 21; 186(26):5690-5704.e20. Matteson NL, Hassler GW, Kurzban E, Schwab MA, Perkins SA, Gangavarapu K, Levy JI, Parker E, Pride D, Hakim A, De Hoff P, Cheung W, Castro-Martinez A, Rivera A, Veder A, Rivera A, Wauer C, Holmes J, Wilson J, Ngo SN, Plascencia A, Lawrence ES, Smoot EW, Eisner ER, Tsai R, Chacón M, Baer NA, Seaver P, Salido RA, Aigner S, Ngo TT, Barber T, Ostrander T, Fielding-Miller R, Simmons EH, Zazueta OE, Serafin-Higuera I, Sanchez-Alavez M, Moreno-Camacho JL, García-Gil A, Murphy Schafer AR, McDonald E, Corrigan J, Malone JD, Stous S, Shah S, Moshiri N, Weiss A, Anderson C, Aceves CM, Spencer EG, Hufbauer EC, Lee JJ, King AJ, Ramesh KS, Nguyen KN, Saucedo K, Robles-Sikisaka R, Fisch KM, Gonias SL, Birmingham A, McDonald D, Karthikeyan S, Martin NK, Schooley RT, Negrete AJ, Reyna HJ, Chavez JR, Garcia ML, Cornejo-Bravo JM, Becker D, Isaksson M, Washington NL, Lee W, Garfein RS, Luna-Ruiz Esparza MA, Alcántar-Fernández J, Henson B, Jepsen K, Olivares-Flores B, Barrera-Badillo G, Lopez-Martínez I, Ramírez-González JE, Flores-León R, Kingsmore SF, Sanders A, Pradenas A, White B, Matthews G, Hale M, McLawhon RW, Reed SL, Winbush T, McHardy IH, Fielding RA, Nicholson L, Quigley MM, Harding A, Mendoza A, Bakhtar O, Browne SH, Olivas Flores J, Rincon Rodríguez DG, Gonzalez Ibarra M, Robles Ibarra LC, Arellano Vera BJ, Gonzalez Garcia J, Harvey-Vera A, Knight R, Laurent LC, Yeo GW, Wertheim JO, Ji X, Worobey M, Suchard MA, Andersen KG, Campos-Romero A, Wohl S, Zeller M. PMID: 38101407; PMCID: PMC10795731.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCellsPHPublic Health
    32. Bayesian safety surveillance with adaptive bias correction. Stat Med. 2024 01 30; 43(2):395-418. Bu F, Schuemie MJ, Nishimura A, Smith LH, Kostka K, Falconer T, McLeggon JA, Ryan PB, Hripcsak G, Suchard MA. PMID: 38010062.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    33. An explainable machine learning-based phenomapping strategy for adaptive predictive enrichment in randomized clinical trials. NPJ Digit Med. 2023 Nov 25; 6(1):217. Oikonomou EK, Thangaraj PM, Bhatt DL, Ross JS, Young LH, Krumholz HM, Suchard MA, Khera R. PMID: 38001154; PMCID: PMC10673945.
      View in: PubMed   Mentions: 6  
    34. Evaluating the impact of alternative phenotype definitions on incidence rates across a global data network. JAMIA Open. 2023 Dec; 6(4):ooad096. Makadia R, Shoaibi A, Rao GA, Ostropolets A, Rijnbeek PR, Voss EA, Duarte-Salles T, Ramírez-Anguita JM, Mayer MA, Maljkovic F, Denaxas S, Nyberg F, Papez V, Sena AG, Alshammari TM, Lai LYH, Haynes K, Suchard MA, Hripcsak G, Ryan PB. PMID: 38028730; PMCID: PMC10662662.
      View in: PubMed   Mentions:
    35. Shrinkage-based Random Local Clocks with Scalable Inference. Mol Biol Evol. 2023 Nov 03; 40(11). Fisher AA, Ji X, Nishimura A, Baele G, Lemey P, Suchard MA. PMID: 37950885; PMCID: PMC10665039.
      View in: PubMed   Mentions: 6     Fields:    Translation:Animals
    36. APOBEC3 deaminase editing in mpox virus as evidence for sustained human transmission since at least 2016. Science. 2023 11 03; 382(6670):595-600. O'Toole Á, Neher RA, Ndodo N, Borges V, Gannon B, Gomes JP, Groves N, King DJ, Maloney D, Lemey P, Lewandowski K, Loman N, Myers R, Omah IF, Suchard MA, Worobey M, Chand M, Ihekweazu C, Ulaeto D, Adetifa I, Rambaut A. PMID: 37917680; PMCID: PMC10880385.
      View in: PubMed   Mentions: 30     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    37. Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models. bioRxiv. 2023 Nov 02. Shao Y, Magee AF, Vasylyeva TI, Suchard MA. PMID: 37961423; PMCID: PMC10634968.
      View in: PubMed   Mentions:
    38. An explainable machine learning-based phenomapping strategy for adaptive predictive enrichment in randomized controlled trials. medRxiv. 2023 Nov 01. Oikonomou EK, Thangaraj PM, Bhatt DL, Ross JS, Young LH, Krumholz HM, Suchard MA, Khera R. PMID: 37961715; PMCID: PMC10635225.
      View in: PubMed   Mentions:
    39. Scalable Bayesian Divergence Time Estimation With Ratio Transformations. Syst Biol. 2023 11 01; 72(5):1136-1153. Ji X, Fisher AA, Su S, Thorne JL, Potter B, Lemey P, Baele G, Suchard MA. PMID: 37458991; PMCID: PMC10636426.
      View in: PubMed   Mentions: 3     Fields:    
    40. Dispersal history and bidirectional human-fish host switching of invasive, hypervirulent Streptococcus agalactiae sequence type 283. PLOS Glob Public Health. 2023; 3(10):e0002454. Schar D, Zhang Z, Pires J, Vrancken B, Suchard MA, Lemey P, Ip M, Gilbert M, Van Boeckel T, Dellicour S. PMID: 37856430; PMCID: PMC10586614.
      View in: PubMed   Mentions: 1  
    41. Multinational patterns of second line antihyperglycaemic drug initiation across cardiovascular risk groups: federated pharmacoepidemiological evaluation in LEGEND-T2DM. BMJ Med. 2023; 2(1):e000651. Khera R, Dhingra LS, Aminorroaya A, Li K, Zhou JJ, Arshad F, Blacketer C, Bowring MG, Bu F, Cook M, Dorr DA, Duarte-Salles T, DuVall SL, Falconer T, French TE, Hanchrow EE, Horban S, Lau WC, Li J, Liu Y, Lu Y, Man KK, Matheny ME, Mathioudakis N, McLemore MF, Minty E, Morales DR, Nagy P, Nishimura A, Ostropolets A, Pistillo A, Posada JD, Pratt N, Reyes C, Ross JS, Seager S, Shah N, Simon K, Wan EY, Yang J, Yin C, You SC, Schuemie MJ, Ryan PB, Hripcsak G, Krumholz H, Suchard MA. PMID: 37829182; PMCID: PMC10565313.
      View in: PubMed   Mentions: 4  
    42. Random-effects substitution models for phylogenetics via scalable gradient approximations. ArXiv. 2023 Sep 25. Magee AF, Holbrook AJ, Pekar JE, Caviedes-Solis IW, Iv FAM, Baele G, Wertheim JO, Ji X, Lemey P, Suchard MA. PMID: 36994154; PMCID: PMC10055484.
      View in: PubMed   Mentions:
    43. Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic. bioRxiv. 2023 Sep 14. Crits-Christoph A, Levy JI, Pekar JE, Goldstein SA, Singh R, Hensel Z, Gangavarapu K, Rogers MB, Moshiri N, Garry RF, Holmes EC, Koopmans MPG, Lemey P, Popescu S, Rambaut A, Robertson DL, Suchard MA, Wertheim JO, Rasmussen AL, Andersen KG, Worobey M, Débarre F. PMID: 37745602; PMCID: PMC10515900.
      View in: PubMed   Mentions: 1  
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    99. Phylogeography Reveals Association between Swine Trade and the Spread of Porcine Epidemic Diarrhea Virus in China and across the World. Mol Biol Evol. 2022 02 03; 39(2). He WT, Bollen N, Xu Y, Zhao J, Dellicour S, Yan Z, Gong W, Zhang C, Zhang L, Lu M, Lai A, Suchard MA, Ji X, Tu C, Lemey P, Baele G, Su S. PMID: 34951645; PMCID: PMC8826572.
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    101. Characteristics and outcomes of COVID-19 patients with COPD from the United States, South Korea, and Europe. Wellcome Open Res. 2022; 7:22. Moreno-Martos D, Verhamme K, Ostropolets A, Kostka K, Duarte-Sales T, Prieto-Alhambra D, Alshammari TM, Alghoul H, Ahmed WU, Blacketer C, DuVall S, Lai L, Matheny M, Nyberg F, Posada J, Rijnbeek P, Spotnitz M, Sena A, Shah N, Suchard M, Chan You S, Hripcsak G, Ryan P, Morales D. PMID: 36845321; PMCID: PMC9951545.
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    107. Bias, Precision and Timeliness of Historical (Background) Rate Comparison Methods for Vaccine Safety Monitoring: An Empirical Multi-Database Analysis. Front Pharmacol. 2021; 12:773875. Li X, Lai LY, Ostropolets A, Arshad F, Tan EH, Casajust P, Alshammari TM, Duarte-Salles T, Minty EP, Areia C, Pratt N, Ryan PB, Hripcsak G, Suchard MA, Schuemie MJ, Prieto-Alhambra D. PMID: 34899334; PMCID: PMC8652333.
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    110. Relax, Keep Walking - A Practical Guide to Continuous Phylogeographic Inference with BEAST. Mol Biol Evol. 2021 07 29; 38(8):3486-3493. Dellicour S, Gill MS, Faria NR, Rambaut A, Pybus OG, Suchard MA, Lemey P. PMID: 33528560; PMCID: PMC8321535.
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    113. Characteristics and Outcomes of Over 300,000 Patients with COVID-19 and History of Cancer in the United States and Spain. Cancer Epidemiol Biomarkers Prev. 2021 10; 30(10):1884-1894. Roel E, Pistillo A, Recalde M, Sena AG, Fernández-Bertolín S, Aragón M, Puente D, Ahmed WU, Alghoul H, Alser O, Alshammari TM, Areia C, Blacketer C, Carter W, Casajust P, Culhane AC, Dawoud D, DeFalco F, DuVall SL, Falconer T, Golozar A, Gong M, Hester L, Hripcsak G, Tan EH, Jeon H, Jonnagaddala J, Lai LYH, Lynch KE, Matheny ME, Morales DR, Natarajan K, Nyberg F, Ostropolets A, Posada JD, Prats-Uribe A, Reich CG, Rivera DR, Schilling LM, Soerjomataram I, Shah K, Shah NH, Shen Y, Spotniz M, Subbian V, Suchard MA, Trama A, Zhang L, Zhang Y, Ryan PB, Prieto-Alhambra D, Kostka K, Duarte-Salles T. PMID: 34272262; PMCID: PMC8974356.
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    114. Ebola vaccine-induced protection in nonhuman primates correlates with antibody specificity and Fc-mediated effects. Sci Transl Med. 2021 07 14; 13(602). Meyer M, Gunn BM, Malherbe DC, Gangavarapu K, Yoshida A, Pietzsch C, Kuzmina NA, Saphire EO, Collins PL, Crowe JE, Zhu JJ, Suchard MA, Brining DL, Mire CE, Cross RW, Geisbert JB, Samal SK, Andersen KG, Alter G, Geisbert TW, Bukreyev A. PMID: 34261800; PMCID: PMC8675601.
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    115. A phenomapping-derived tool to personalize the selection of anatomical vs. functional testing in evaluating chest pain (ASSIST). Eur Heart J. 2021 07 08; 42(26):2536-2548. Oikonomou EK, Van Dijk D, Parise H, Suchard MA, de Lemos J, Antoniades C, Velazquez EJ, Miller EJ, Khera R. PMID: 33881513; PMCID: PMC8488385.
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    116. Risk of depression, suicide and psychosis with hydroxychloroquine treatment for rheumatoid arthritis: a multinational network cohort study. Rheumatology (Oxford). 2021 07 01; 60(7):3222-3234. Lane JCE, Weaver J, Kostka K, Duarte-Salles T, Abrahao MTF, Alghoul H, Alser O, Alshammari TM, Areia C, Biedermann P, Banda JM, Burn E, Casajust P, Fister K, Hardin J, Hester L, Hripcsak G, Kaas-Hansen BS, Khosla S, Kolovos S, Lynch KE, Makadia R, Mehta PP, Morales DR, Morgan-Stewart H, Mosseveld M, Newby D, Nyberg F, Ostropolets A, Woong Park R, Prats-Uribe A, Rao GA, Reich C, Rijnbeek P, Sena AG, Shoaibi A, Spotnitz M, Subbian V, Suchard MA, Vizcaya D, Wen H, Wilde M, Xie J, You SC, Zhang L, Lovestone S, Ryan P, Prieto-Alhambra D, OHDSI-COVID-19 consortium. PMID: 33367863; PMCID: PMC7798671.
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    117. Untangling introductions and persistence in COVID-19 resurgence in Europe. Nature. 2021 07; 595(7869):713-717. Lemey P, Ruktanonchai N, Hong SL, Colizza V, Poletto C, Van den Broeck F, Gill MS, Ji X, Levasseur A, Oude Munnink BB, Koopmans M, Sadilek A, Lai S, Tatem AJ, Baele G, Suchard MA, Dellicour S. PMID: 34192736; PMCID: PMC8324533.
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    118. Characterising the background incidence rates of adverse events of special interest for covid-19 vaccines in eight countries: multinational network cohort study. BMJ. 2021 06 14; 373:n1435. Li X, Ostropolets A, Makadia R, Shoaibi A, Rao G, Sena AG, Martinez-Hernandez E, Delmestri A, Verhamme K, Rijnbeek PR, Duarte-Salles T, Suchard MA, Ryan PB, Hripcsak G, Prieto-Alhambra D. PMID: 35727911; PMCID: PMC8193077.
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    119. Thirty-Day Outcomes of Children and Adolescents With COVID-19: An International Experience. Pediatrics. 2021 09; 148(3). Duarte-Salles T, Vizcaya D, Pistillo A, Casajust P, Sena AG, Lai LYH, Prats-Uribe A, Ahmed WU, Alshammari TM, Alghoul H, Alser O, Burn E, You SC, Areia C, Blacketer C, DuVall S, Falconer T, Fernandez-Bertolin S, Fortin S, Golozar A, Gong M, Tan EH, Huser V, Iveli P, Morales DR, Nyberg F, Posada JD, Recalde M, Roel E, Schilling LM, Shah NH, Shah K, Suchard MA, Zhang L, Zhang Y, Williams AE, Reich CG, Hripcsak G, Rijnbeek P, Ryan P, Kostka K, Prieto-Alhambra D. PMID: 34049958.
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    120. A phylogenetic approach for weighting genetic sequences. BMC Bioinformatics. 2021 May 28; 22(1):285. De Maio N, Alekseyenko AV, Coleman-Smith WJ, Pardi F, Suchard MA, Tamuri AU, Truszkowski J, Goldman N. PMID: 34049487; PMCID: PMC8164272.
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    122. Male-Female Disparities in Years of Potential Life Lost Attributable to COVID-19 in the United States: A State-by-State Analysis. medRxiv. 2021 May 05. Xu JJ, Chen JT, Belin TR, Brookmeyer RS, Suchard MA, Ramirez CM. PMID: 33972951; PMCID: PMC8109188.
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    124. Characterizing the incidence of adverse events of special interest for COVID-19 vaccines across eight countries: a multinational network cohort study. medRxiv. 2021 Apr 17. Li X, Ostropolets A, Makadia R, Shaoibi A, Rao G, Sena AG, Martinez-Hernandez E, Delmestri A, Verhamme K, Rijnbeek PR, Duarte-Salles T, Suchard M, Ryan P, Hripcsak G, Prieto-Alhambra D. PMID: 33791732; PMCID: PMC8010764.
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    126. Implementation of the COVID-19 Vulnerability Index Across an International Network of Health Care Data Sets: Collaborative External Validation Study. JMIR Med Inform. 2021 Apr 05; 9(4):e21547. Reps JM, Kim C, Williams RD, Markus AF, Yang C, Duarte-Salles T, Falconer T, Jonnagaddala J, Williams A, Fernández-Bertolín S, DuVall SL, Kostka K, Rao G, Shoaibi A, Ostropolets A, Spotnitz ME, Zhang L, Casajust P, Steyerberg EW, Nyberg F, Kaas-Hansen BS, Choi YH, Morales D, Liaw ST, Abrahão MTF, Areia C, Matheny ME, Lynch KE, Aragón M, Park RW, Hripcsak G, Reich CG, Suchard MA, You SC, Ryan PB, Prieto-Alhambra D, Rijnbeek PR. PMID: 33661754; PMCID: PMC8023380.
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    128. Ebola Virus Transmission Initiated by Relapse of Systemic Ebola Virus Disease. N Engl J Med. 2021 04 01; 384(13):1240-1247. Mbala-Kingebeni P, Pratt C, Mutafali-Ruffin M, Pauthner MG, Bile F, Nkuba-Ndaye A, Black A, Kinganda-Lusamaki E, Faye M, Aziza A, Diagne MM, Mukadi D, White B, Hadfield J, Gangavarapu K, Bisento N, Kazadi D, Nsunda B, Akonga M, Tshiani O, Misasi J, Ploquin A, Epaso V, Sana-Paka E, N'kasar YTT, Mambu F, Edidi F, Matondo M, Bula Bula J, Diallo B, Keita M, Belizaire MRD, Fall IS, Yam A, Mulangu S, Rimoin AW, Salfati E, Torkamani A, Suchard MA, Crozier I, Hensley L, Rambaut A, Faye O, Sall A, Sullivan NJ, Bedford T, Andersen KG, Wiley MR, Ahuka-Mundeke S, Muyembe Tamfum JJ. PMID: 33789012; PMCID: PMC7888312.
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    129. Emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States. Cell. 2021 05 13; 184(10):2587-2594.e7. Washington NL, Gangavarapu K, Zeller M, Bolze A, Cirulli ET, Schiabor Barrett KM, Larsen BB, Anderson C, White S, Cassens T, Jacobs S, Levan G, Nguyen J, Ramirez JM, Rivera-Garcia C, Sandoval E, Wang X, Wong D, Spencer E, Robles-Sikisaka R, Kurzban E, Hughes LD, Deng X, Wang C, Servellita V, Valentine H, De Hoff P, Seaver P, Sathe S, Gietzen K, Sickler B, Antico J, Hoon K, Liu J, Harding A, Bakhtar O, Basler T, Austin B, MacCannell D, Isaksson M, Febbo PG, Becker D, Laurent M, McDonald E, Yeo GW, Knight R, Laurent LC, de Feo E, Worobey M, Chiu CY, Suchard MA, Lu JT, Lee W, Andersen KG. PMID: 33861950; PMCID: PMC8009040.
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    130. Pandemic velocity: Forecasting COVID-19 in the US with a machine learning & Bayesian time series compartmental model. PLoS Comput Biol. 2021 03; 17(3):e1008837. Watson GL, Xiong D, Zhang L, Zoller JA, Shamshoian J, Sundin P, Bufford T, Rimoin AW, Suchard MA, Ramirez CM. PMID: 33780443; PMCID: PMC8031749.
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    131. Comprehensive Comparative Effectiveness and Safety of First-Line β-Blocker Monotherapy in Hypertensive Patients: A Large-Scale Multicenter Observational Study. Hypertension. 2021 05 05; 77(5):1528-1538. Chan You S, Krumholz HM, Suchard MA, Schuemie MJ, Hripcsak G, Chen R, Shea S, Duke J, Pratt N, Reich CG, Madigan D, Ryan PB, Woong Park R, Park S. PMID: 33775125; PMCID: PMC8035236.
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    132. Alpha-1 blockers and susceptibility to COVID-19 in benign prostate hyperplasia patients : an international cohort study. medRxiv. 2021 Mar 24. Nishimura A, Xie J, Kostka K, Duarte-Salles T, Bertolín SF, Aragón M, Blacketer C, Shoaibi A, DuVall SL, Lynch K, Matheny ME, Falconer T, Morales DR, Conover MM, You SC, Pratt N, Weaver J, Sena AG, Schuemie MJ, Reps J, Reich C, Rijnbeek PR, Ryan PB, Hripcsak G, Prieto-Alhambra D, Suchard MA. PMID: 33791740; PMCID: PMC8010772.
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    134. Genomics and epidemiology of a novel SARS-CoV-2 lineage in Manaus, Brazil. medRxiv. 2021 Mar 03. Faria NR, Mellan TA, Whittaker C, Claro IM, Candido DDS, Mishra S, Crispim MAE, Sales FC, Hawryluk I, McCrone JT, Hulswit RJG, Franco LAM, Ramundo MS, de Jesus JG, Andrade PS, Coletti TM, Ferreira GM, Silva CAM, Manuli ER, Pereira RHM, Peixoto PS, Kraemer MU, Gaburo N, Camilo CDC, Hoeltgebaum H, Souza WM, Rocha EC, de Souza LM, de Pinho MC, Araujo LJT, Malta FSV, de Lima AB, Silva JDP, Zauli DAG, de S Ferreira AC, Schnekenberg RP, Laydon DJ, Walker PGT, Schlüter HM, Dos Santos ALP, Vidal MS, Del Caro VS, Filho RMF, Dos Santos HM, Aguiar RS, Modena JLP, Nelson B, Hay JA, Monod M, Miscouridou X, Coupland H, Sonabend R, Vollmer M, Gandy A, Suchard MA, Bowden TA, Pond SLK, Wu CH, Ratmann O, Ferguson NM, Dye C, Loman NJ, Lemey P, Rambaut A, Fraiji NA, Carvalho MDPSS, Pybus OG, Flaxman S, Bhatt S, Sabino EC. PMID: 33688664; PMCID: PMC7941639.
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    139. Emergence of an early SARS-CoV-2 epidemic in the United States. medRxiv. 2021 Feb 08. Zeller M, Gangavarapu K, Anderson C, Smither AR, Vanchiere JA, Rose R, Snyder DJ, Dudas G, Watts A, Matteson NL, Robles-Sikisaka R, Marshall M, Feehan AK, Sabino-Santos G, Bell-Kareem AR, Hughes LD, Alkuzweny M, Snarski P, Garcia-Diaz J, Scott RS, Melnik LI, Klitting R, McGraw M, Belda-Ferre P, DeHoff P, Sathe S, Marotz C, Grubaugh N, Nolan DJ, Drouin AC, Genemaras KJ, Chao K, Topol S, Spencer E, Nicholson L, Aigner S, Yeo GW, Farnaes L, Hobbs CA, Laurent LC, Knight R, Hodcroft EB, Khan K, Fusco DN, Cooper VS, Lemey P, Gardner L, Lamers SL, Kamil JP, Garry RF, Suchard MA, Andersen KG. PMID: 33564781; PMCID: PMC7872376.
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    150. Baseline characteristics, management, and outcomes of 55,270 children and adolescents diagnosed with COVID-19 and 1,952,693 with influenza in France, Germany, Spain, South Korea and the United States: an international network cohort study. medRxiv. 2020 Oct 30. Duarte-Salles T, Vizcaya D, Pistillo A, Casajust P, Sena AG, Lai LYH, Prats-Uribe A, Ahmed WU, Alshammari TM, Alghoul H, Alser O, Burn E, You SC, Areia C, Blacketer C, DuVall S, Falconer T, Fernandez-Bertolin S, Fortin S, Golozar A, Gong M, Tan EH, Huser V, Iveli P, Morales DR, Nyberg F, Posada JD, Recalde M, Roel E, Schilling LM, Shah NH, Shah K, Suchard MA, Zhang L, Zhang Y, Williams AE, Reich CG, Hripcsak G, Rijnbeek P, Ryan P, Kostka K, Prieto-Alhambra D. PMID: 33140074; PMCID: PMC7605587.
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    153. Estimating effective population size changes from preferentially sampled genetic sequences. PLoS Comput Biol. 2020 10; 16(10):e1007774. Karcher MD, Carvalho LM, Suchard MA, Dudas G, Minin VN. PMID: 33044955; PMCID: PMC7580988.
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    154. Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2. Nat Commun. 2020 10 09; 11(1):5110. Lemey P, Hong SL, Hill V, Baele G, Poletto C, Colizza V, O'Toole Á, McCrone JT, Andersen KG, Worobey M, Nelson MI, Rambaut A, Suchard MA. PMID: 33037213; PMCID: PMC7547076.
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    159. Genomic Epidemiology, Evolution, and Transmission Dynamics of Porcine Deltacoronavirus. Mol Biol Evol. 2020 09 01; 37(9):2641-2654. He WT, Ji X, He W, Dellicour S, Wang S, Li G, Zhang L, Gilbert M, Zhu H, Xing G, Veit M, Huang Z, Han GZ, Huang Y, Suchard MA, Baele G, Lemey P, Su S. PMID: 32407507; PMCID: PMC7454817.
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    301. A Bayesian phylogenetic method to estimate unknown sequence ages. Mol Biol Evol. 2011 Feb; 28(2):879-87. Shapiro B, Ho SY, Drummond AJ, Suchard MA, Pybus OG, Rambaut A. PMID: 20889726; PMCID: PMC3108556.
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    302. Three roads diverged? Routes to phylogeographic inference. Trends Ecol Evol. 2010 Nov; 25(11):626-32. Bloomquist EW, Lemey P, Suchard MA. PMID: 20863591; PMCID: PMC2956787.
      View in: PubMed   Mentions: 39     Fields:    Translation:Animals
    303. Bayesian random local clocks, or one rate to rule them all. BMC Biol. 2010 Aug 31; 8:114. Drummond AJ, Suchard MA. PMID: 20807414; PMCID: PMC2949620.
      View in: PubMed   Mentions: 167     Fields:    Translation:Animals
    304. Graphics Processing Units and High-Dimensional Optimization. Stat Sci. 2010 Aug 01; 25(3):311-324. Zhou H, Lange K, Suchard MA. PMID: 21847315; PMCID: PMC3155776.
      View in: PubMed   Mentions: 18  
    305. Yellow fever virus maintenance in Trinidad and its dispersal throughout the Americas. J Virol. 2010 Oct; 84(19):9967-77. Auguste AJ, Lemey P, Pybus OG, Suchard MA, Salas RA, Adesiyun AA, Barrett AD, Tesh RB, Weaver SC, Carrington CV. PMID: 20631128; PMCID: PMC2937779.
      View in: PubMed   Mentions: 38     Fields:    Translation:HumansAnimalsCells
    306. Understanding GPU Programming for Statistical Computation: Studies in Massively Parallel Massive Mixtures. J Comput Graph Stat. 2010 Jun 01; 19(2):419-438. Suchard MA, Wang Q, Chan C, Frelinger J, Cron A, West M. PMID: 20877443; PMCID: PMC2945379.
      View in: PubMed   Mentions: 30  
    307. Evolution and recombination of genes encoding HIV-1 drug resistance and tropism during antiretroviral therapy. Virology. 2010 Aug 15; 404(1):5-20. Shi B, Kitchen C, Weiser B, Mayers D, Foley B, Kemal K, Anastos K, Suchard M, Parker M, Brunner C, Burger H. PMID: 20451945; PMCID: PMC3186207.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
    308. Using time-structured data to estimate evolutionary rates of double-stranded DNA viruses. Mol Biol Evol. 2010 Sep; 27(9):2038-51. Firth C, Kitchen A, Shapiro B, Suchard MA, Holmes EC, Rambaut A. PMID: 20363828; PMCID: PMC3107591.
      View in: PubMed   Mentions: 153     Fields:    Translation:Cells
    309. Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus) population dynamics. Proc Natl Acad Sci U S A. 2010 Mar 23; 107(12):5675-80. Campos PF, Willerslev E, Sher A, Orlando L, Axelsson E, Tikhonov A, Aaris-Sørensen K, Greenwood AD, Kahlke RD, Kosintsev P, Krakhmalnaya T, Kuznetsova T, Lemey P, MacPhee R, Norris CA, Shepherd K, Suchard MA, Zazula GD, Shapiro B, Gilbert MT. PMID: 20212118; PMCID: PMC2851807.
      View in: PubMed   Mentions: 54     Fields:    Translation:HumansAnimals
    310. Phylogeography takes a relaxed random walk in continuous space and time. Mol Biol Evol. 2010 Aug; 27(8):1877-85. Lemey P, Rambaut A, Welch JJ, Suchard MA. PMID: 20203288; PMCID: PMC2915639.
      View in: PubMed   Mentions: 291     Fields:    Translation:AnimalsPHPublic Health
    311. Reuse, Recycle, Reweigh: Combating Influenza through Efficient Sequential Bayesian Computation for Massive Data. Ann Appl Stat. 2010; 4(4):1722-1748. Tom JA, Sinsheimer JS, Suchard MA. PMID: 26681992; PMCID: PMC4679157.
      View in: PubMed   Mentions: 8  
    312. Unifying vertical and nonvertical evolution: a stochastic ARG-based framework. Syst Biol. 2010 Jan; 59(1):27-41. Bloomquist EW, Suchard MA. PMID: 20525618; PMCID: PMC2909786.
      View in: PubMed   Mentions: 26     Fields:    Translation:AnimalsCells
    313. Bayesian phylogeography finds its roots. PLoS Comput Biol. 2009 Sep; 5(9):e1000520. Lemey P, Rambaut A, Drummond AJ, Suchard MA. PMID: 19779555; PMCID: PMC2740835.
      View in: PubMed   Mentions: 882     Fields:    Translation:HumansAnimalsCells
    314. Reconstructing the initial global spread of a human influenza pandemic: A Bayesian spatial-temporal model for the global spread of H1N1pdm. PLoS Curr. 2009 Sep 02; 1:RRN1031. Lemey P, Suchard M, Rambaut A. PMID: 20029613; PMCID: PMC2762761.
      View in: PubMed   Mentions: 59  
    315. Improving phylogenetic analyses by incorporating additional information from genetic sequence databases. Bioinformatics. 2009 Oct 01; 25(19):2530-6. Liang LJ, Weiss RE, Redelings B, Suchard MA. PMID: 19661240; PMCID: PMC2800350.
      View in: PubMed   Mentions: 3     Fields:    
    316. Many-core algorithms for statistical phylogenetics. Bioinformatics. 2009 Jun 01; 25(11):1370-6. Suchard MA, Rambaut A. PMID: 19369496; PMCID: PMC2682525.
      View in: PubMed   Mentions: 176     Fields:    
    317. Two-way Bayesian hierarchical phylogenetic models: An application to the co-evolution of gp120 and gp41 during and after enfuvirtide treatment. Comput Stat Data Anal. 2009 Jan 15; 53(3):766-775. Kitchen CM, Kroll J, Kuritzkes DR, Bloomquist E, Deeks SG, Suchard MA. PMID: 20442796; PMCID: PMC2862497.
      View in: PubMed   Mentions: 3  
    318. Learning to count: robust estimates for labeled distances between molecular sequences. Mol Biol Evol. 2009 Apr; 26(4):801-14. O'Brien JD, Minin VN, Suchard MA. PMID: 19131426; PMCID: PMC2734148.
      View in: PubMed   Mentions: 64     Fields:    Translation:Cells
    319. Fast, accurate and simulation-free stochastic mapping. Philos Trans R Soc Lond B Biol Sci. 2008 Dec 27; 363(1512):3985-95. Minin VN, Suchard MA. PMID: 18852111; PMCID: PMC2607419.
      View in: PubMed   Mentions: 90     Fields:    
    320. Genetic diversity of the Leptospiral immunoglobulin-like (Lig) genes in pathogenic Leptospira spp. Infect Genet Evol. 2009 Mar; 9(2):196-205. McBride AJ, Cerqueira GM, Suchard MA, Moreira AN, Zuerner RL, Reis MG, Haake DA, Ko AI, Dellagostin OA. PMID: 19028604; PMCID: PMC2812920.
      View in: PubMed   Mentions: 36     Fields:    Translation:AnimalsCells
    321. Fully Bayesian tests of neutrality using genealogical summary statistics. BMC Genet. 2008 Oct 31; 9:68. Drummond AJ, Suchard MA. PMID: 18976476; PMCID: PMC2645432.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    322. Wagner and Dollo: a stochastic duet by composing two parsimonious solos. Syst Biol. 2008 Oct; 57(5):772-84. Alekseyenko AV, Lee CJ, Suchard MA. PMID: 18853363; PMCID: PMC4677801.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansAnimalsCells
    323. StepBrothers: inferring partially shared ancestries among recombinant viral sequences. Biostatistics. 2009 Jan; 10(1):106-20. Bloomquist EW, Dorman KS, Suchard MA. PMID: 18562348; PMCID: PMC2639346.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    324. Dating the time of viral subtype divergence. BMC Evol Biol. 2008 Jun 09; 8:172. O'Brien JD, She ZS, Suchard MA. PMID: 18541033; PMCID: PMC2443812.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    325. Pomegranate juice and extracts provide similar levels of plasma and urinary ellagitannin metabolites in human subjects. J Med Food. 2008 Jun; 11(2):390-4. Seeram NP, Zhang Y, McKeever R, Henning SM, Lee RP, Suchard MA, Li Z, Chen S, Thames G, Zerlin A, Nguyen M, Wang D, Dreher M, Heber D. PMID: 18598186; PMCID: PMC3196216.
      View in: PubMed   Mentions: 45     Fields:    Translation:HumansAnimals
    326. Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics. Mol Biol Evol. 2008 Jul; 25(7):1459-71. Minin VN, Bloomquist EW, Suchard MA. PMID: 18408232; PMCID: PMC3302198.
      View in: PubMed   Mentions: 353     Fields:    Translation:HumansCells
    327. Alignment uncertainty and genomic analysis. Science. 2008 Jan 25; 319(5862):473-6. Wong KM, Suchard MA, Huelsenbeck JP. PMID: 18218900.
      View in: PubMed   Mentions: 157     Fields:    Translation:AnimalsCells
    328. Representational oligonucleotide microarray analysis (ROMA) and comparison of binning and change-point methods of analysis: application to detection of del22q11.2 (DiGeorge) syndrome. Hum Mutat. 2008 Jan; 29(1):176-81. Stanczak CM, Chen Z, Nelson SF, Suchard M, McCabe ER, McGhee S. PMID: 17694540.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    329. A nonparametric method for accommodating and testing across-site rate variation. Syst Biol. 2007 Dec; 56(6):975-87. Huelsenbeck JP, Suchard MA. PMID: 18075934.
      View in: PubMed   Mentions: 20     Fields:    
    330. Leptospira interrogans endostatin-like outer membrane proteins bind host fibronectin, laminin and regulators of complement. PLoS One. 2007 Nov 14; 2(11):e1188. Stevenson B, Choy HA, Pinne M, Rotondi ML, Miller MC, Demoll E, Kraiczy P, Cooley AE, Creamer TP, Suchard MA, Brissette CA, Verma A, Haake DA. PMID: 18000555; PMCID: PMC2063517.
      View in: PubMed   Mentions: 96     Fields:    Translation:Cells
    331. Validation of candidate serum ovarian cancer biomarkers for early detection. Biomark Insights. 2007 Oct 16; 2:369-75. Su F, Lang J, Kumar A, Ng C, Hsieh B, Suchard MA, Reddy ST, Farias-Eisner R. PMID: 19662218; PMCID: PMC2717832.
      View in: PubMed   Mentions: 24  
    332. Counting labeled transitions in continuous-time Markov models of evolution. J Math Biol. 2008 Mar; 56(3):391-412. Minin VN, Suchard MA. PMID: 17874105.
      View in: PubMed   Mentions: 176     Fields:    
    333. Pomegranate ellagitannin-derived metabolites inhibit prostate cancer growth and localize to the mouse prostate gland. J Agric Food Chem. 2007 Sep 19; 55(19):7732-7. Seeram NP, Aronson WJ, Zhang Y, Henning SM, Moro A, Lee RP, Sartippour M, Harris DM, Rettig M, Suchard MA, Pantuck AJ, Belldegrun A, Heber D. PMID: 17722872.
      View in: PubMed   Mentions: 81     Fields:    Translation:HumansAnimals
    334. Development of an advanced electrochemical DNA biosensor for bacterial pathogen detection. J Mol Diagn. 2007 Apr; 9(2):158-68. Liao JC, Mastali M, Li Y, Gau V, Suchard MA, Babbitt J, Gornbein J, Landaw EM, McCabe ER, Churchill BM, Haake DA. PMID: 17384207; PMCID: PMC1867445.
      View in: PubMed   Mentions: 29     Fields:    Translation:Cells
    335. Incorporating indel information into phylogeny estimation for rapidly emerging pathogens. BMC Evol Biol. 2007 Mar 14; 7:40. Redelings BD, Suchard MA. PMID: 17359539; PMCID: PMC1853084.
      View in: PubMed   Mentions: 39     Fields:    Translation:Cells
    336. Phylogenetic mapping of recombination hotspots in human immunodeficiency virus via spatially smoothed change-point processes. Genetics. 2007 Apr; 175(4):1773-85. Minin VN, Dorman KS, Fang F, Suchard MA. PMID: 17194781; PMCID: PMC1855141.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansAnimalsCells
    337. cBrother: relaxing parental tree assumptions for Bayesian recombination detection. Bioinformatics. 2007 Feb 15; 23(4):507-8. Fang F, Ding J, Minin VN, Suchard MA, Dorman KS. PMID: 17145740.
      View in: PubMed   Mentions: 8     Fields:    Translation:Cells
    338. Continued evolution in gp41 after interruption of enfuvirtide in subjects with advanced HIV type 1 disease. AIDS Res Hum Retroviruses. 2006 Dec; 22(12):1260-6. Kitchen CM, Lu J, Suchard MA, Hoh R, Martin JN, Kuritzkes DR, Deeks SG. PMID: 17209769.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    339. Time squared: repeated measures on phylogenies. Mol Biol Evol. 2007 Feb; 24(2):352-62. Guo H, Weiss RE, Gu X, Suchard MA. PMID: 17079699.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimals
    340. Pomegranate juice ellagitannin metabolites are present in human plasma and some persist in urine for up to 48 hours. J Nutr. 2006 Oct; 136(10):2481-5. Seeram NP, Henning SM, Zhang Y, Suchard M, Li Z, Heber D. PMID: 16988113.
      View in: PubMed   Mentions: 128     Fields:    Translation:HumansAnimals
    341. Modeling of the temporal patterns of fluoxetine prescriptions and suicide rates in the United States. PLoS Med. 2006 Jun; 3(6):e190. Milane MS, Suchard MA, Wong ML, Licinio J. PMID: 16768544; PMCID: PMC1475655.
      View in: PubMed   Mentions: 23     Fields:    Translation:Humans
    342. BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny. Bioinformatics. 2006 Aug 15; 22(16):2047-8. Suchard MA, Redelings BD. PMID: 16679334.
      View in: PubMed   Mentions: 98     Fields:    Translation:Cells
    343. Use of electrochemical DNA biosensors for rapid molecular identification of uropathogens in clinical urine specimens. J Clin Microbiol. 2006 Feb; 44(2):561-70. Liao JC, Mastali M, Gau V, Suchard MA, Møller AK, Bruckner DA, Babbitt JT, Li Y, Gornbein J, Landaw EM, McCabe ER, Churchill BM, Haake DA. PMID: 16455913; PMCID: PMC1392664.
      View in: PubMed   Mentions: 72     Fields:    Translation:HumansCells
    344. Models for estimating bayes factors with applications to phylogeny and tests of monophyly. Biometrics. 2005 Sep; 61(3):665-73. Suchard MA, Weiss RE, Sinsheimer JS. PMID: 16135017.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansCells
    345. Joint Bayesian estimation of alignment and phylogeny. Syst Biol. 2005 Jun; 54(3):401-18. Redelings BD, Suchard MA. PMID: 16012107.
      View in: PubMed   Mentions: 97     Fields:    Translation:Cells
    346. Dual multiple change-point model leads to more accurate recombination detection. Bioinformatics. 2005 Jul 01; 21(13):3034-42. Minin VN, Dorman KS, Fang F, Suchard MA. PMID: 15914546.
      View in: PubMed   Mentions: 64     Fields:    
    347. Stochastic models for horizontal gene transfer: taking a random walk through tree space. Genetics. 2005 May; 170(1):419-31. Suchard MA. PMID: 15781714; PMCID: PMC1449731.
      View in: PubMed   Mentions: 16     Fields:    Translation:Cells
    348. Bayesian estimation of recent migration rates after a spatial expansion. Genetics. 2005 May; 170(1):409-17. Hamilton G, Currat M, Ray N, Heckel G, Beaumont M, Excoffier L. PMID: 15716508; PMCID: PMC1449703.
      View in: PubMed   Mentions: 29     Fields:    Translation:AnimalsCells
    349. Early nodal response as a predictor for necessity of functional neck dissection after chemoradiation. Cancer J. 2004 Nov-Dec; 10(6):339-42. Vongtama R, Lee M, Kim B, Sercarz J, Lin K, Suchard MA, Lee SP, Juillard G. PMID: 15701264.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    350. Evolution of human immunodeficiency virus type 1 coreceptor usage during antiretroviral Therapy: a Bayesian approach. J Virol. 2004 Oct; 78(20):11296-302. Kitchen CM, Philpott S, Burger H, Weiser B, Anastos K, Suchard MA. PMID: 15452249; PMCID: PMC521818.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCellsCTClinical Trials
    351. Physician knowledge of herbal toxicities and adverse herb-drug interactions. Eur J Emerg Med. 2004 Aug; 11(4):193-7. Suchard JR, Suchard MA, Steinfeldt JL. PMID: 15249804.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    352. Alterations in the dynamics of circulating ghrelin, adiponectin, and leptin in human obesity. Proc Natl Acad Sci U S A. 2004 Jul 13; 101(28):10434-9. Yildiz BO, Suchard MA, Wong ML, McCann SM, Licinio J. PMID: 15231997; PMCID: PMC478601.
      View in: PubMed   Mentions: 104     Fields:    Translation:HumansCells
    353. Molecular evolution and mosaicism of leptospiral outer membrane proteins involves horizontal DNA transfer. J Bacteriol. 2004 May; 186(9):2818-28. Haake DA, Suchard MA, Kelley MM, Dundoo M, Alt DP, Zuerner RL. PMID: 15090524; PMCID: PMC387810.
      View in: PubMed   Mentions: 66     Fields:    Translation:Cells
    354. Hierarchical phylogenetic models for analyzing multipartite sequence data. Syst Biol. 2003 Oct; 52(5):649-64. Suchard MA, Kitchen CM, Sinsheimer JS, Weiss RE. PMID: 14530132.
      View in: PubMed   Mentions: 55     Fields:    Translation:HumansAnimalsCells
    355. Interplay of chemotaxis and chemokinesis mechanisms in bacterial dynamics. Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Aug; 68(2 Pt 1):021925. D'Orsogna MR, Suchard MA, Chou T. PMID: 14525024.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    356. Testing a molecular clock without an outgroup: derivations of induced priors on branch-length restrictions in a Bayesian framework. Syst Biol. 2003 Feb; 52(1):48-54. Suchard MA, Weiss RE, Sinsheimer JS. PMID: 12554439.
      View in: PubMed   Mentions: 8     Fields:    Translation:Animals
    357. Are you my mother? Bayesian phylogenetic inference of recombination among putative parental strains. Appl Bioinformatics. 2003; 2(3):131-44. Sinsheimer JS, Suchard MA, Dorman KS, Fang F, Weiss RE. PMID: 15130798.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    358. Oh brother, where art thou? A Bayes factor test for recombination with uncertain heritage. Syst Biol. 2002 Oct; 51(5):715-28. Suchard MA, Weiss RE, Dorman KS, Sinsheimer JS. PMID: 12396586.
      View in: PubMed   Mentions: 15     Fields:    Translation:Cells
    359. Regulation of circulating soluble leptin receptor levels by gender, adiposity, sex steroids, and leptin: observational and interventional studies in humans. Diabetes. 2002 Jul; 51(7):2105-12. Chan JL, Blüher S, Yiannakouris N, Suchard MA, Kratzsch J, Mantzoros CS. PMID: 12086939.
      View in: PubMed   Mentions: 76     Fields:    Translation:HumansCells
    360. General practitioners' views on genetic screening for common diseases. Br J Gen Pract. 1999 Jan; 49(438):45-6. Suchard MA, Yudkin P, Sinsheimer JS, Fowler GH. PMID: 10622017; PMCID: PMC1313318.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
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