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Marc Adam Suchard

Title(s)Professor, Human Genetics
SchoolMedicine
Address612 Charles E. Young Drive, Ea 5303
Los Angeles CA 90024
Phone57442, 50936
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    Other Positions
    Title(s)Professor, Computational Medicine


    Collapse Research 
    Collapse Research Activities and Funding
    Bayesian Joint Estimation of Alignment and Phylogeny
    NIH/NIGMS R01GM086887Aug 1, 2008 - Jul 31, 2014
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Risk of hydroxychloroquine alone and in combination with azithromycin in the treatment of rheumatoid arthritis: a multinational, retrospective study. Lancet Rheumatol. 2020 Aug 21. Lane JCE, Weaver J, Kostka K, Duarte-Salles T, Abrahao MTF, Alghoul H, Alser O, Alshammari TM, Biedermann P, Banda JM, Burn E, Casajust P, Conover MM, Culhane AC, Davydov A, DuVall SL, Dymshyts D, Fernandez-Bertolin S, Fišter K, Hardin J, Hester L, Hripcsak G, Kaas-Hansen BS, Kent S, Khosla S, Kolovos S, Lambert CG, van der Lei J, Lynch KE, Makadia R, Margulis AV, Matheny ME, Mehta P, Morales DR, Morgan-Stewart H, Mosseveld M, Newby D, Nyberg F, Ostropolets A, Park RW, Prats-Uribe A, Rao GA, Reich C, Reps J, Rijnbeek P, Sathappan SMK, Schuemie M, Seager S, Sena AG, Shoaibi A, Spotnitz M, Suchard MA, Torre CO, Vizcaya D, Wen H, de Wilde M, Xie J, You SC, Zhang L, Zhuk O, Ryan P, Prieto-Alhambra D. PMID: 32864627.
      View in: PubMed   Mentions:
    2. Relaxed Random Walks at Scale. Syst Biol. 2020 Jul 20. Fisher AA, Ji X, Zhang Z, Lemey P, Suchard MA. PMID: 32687171.
      View in: PubMed   Mentions:    Fields:    
    3. Comparative safety and effectiveness of alendronate versus raloxifene in women with osteoporosis. Sci Rep. 2020 Jul 06; 10(1):11115. Kim Y, Tian Y, Yang J, Huser V, Jin P, Lambert CG, Park H, You SC, Park RW, Rijnbeek PR, Van Zandt M, Reich C, Vashisht R, Wu Y, Duke J, Hripcsak G, Madigan D, Shah NH, Ryan PB, Schuemie MJ, Suchard MA. PMID: 32632237.
      View in: PubMed   Mentions:    Fields:    
    4. Accommodating individual travel history, global mobility, and unsampled diversity in phylogeography: a SARS-CoV-2 case study. bioRxiv. 2020 Jun 23. Lemey P, Hong S, Hill V, Baele G, Poletto C, Colizza V, O'Toole A, McCrone JT, Andersen KG, Worobey M, Nelson MI, Rambaut A, Suchard MA. PMID: 32596695.
      View in: PubMed   Mentions:
    5. Renin-angiotensin system blockers and susceptibility to COVID-19: a multinational open science cohort study. medRxiv. 2020 Jun 12. Morales DR, Conover MM, You SC, Pratt N, Kostka K, Duarte Salles T, Fernandez Bertolin S, Aragon M, DuVall SL, Lynch K, Falconer T, van Bochove K, Sung C, Matheny ME, Lambert CG, Nyberg F, AlShammari TM, Williams AE, Park RW, Weaver J, Sena AG, Schuemie MJ, Rijnbeek PR, Williams RD, Lane JCE, Prats Uribe A, Zhang L, Areia C, Krumholz H, Prieto Alhambra D, Ryan PB, Hripcsak G, Suchard MA. PMID: 32587982.
      View in: PubMed   Mentions:
    6. Online Bayesian Phylodynamic Inference in BEAST with Application to Epidemic Reconstruction. Mol Biol Evol. 2020 06 01; 37(6):1832-1842. Gill MS, Lemey P, Suchard MA, Rambaut A, Baele G. PMID: 32101295.
      View in: PubMed   Mentions:    Fields:    
    7. Gradients do grow on trees: a linear-time ?? (N)-dimensional gradient for statistical phylogenetics. Mol Biol Evol. 2020 May 27. Ji X, Zhang Z, Holbrook A, Nishimura A, Baele G, Rambaut A, Lemey P, Suchard MA. PMID: 32458974.
      View in: PubMed   Mentions: 1     Fields:    
    8. The emergence of SARS-CoV-2 in Europe and the US. bioRxiv. 2020 May 23. Worobey M, Pekar J, Larsen BB, Nelson MI, Hill V, Joy JB, Rambaut A, Suchard MA, Wertheim JO, Lemey P. PMID: 32511416.
      View in: PubMed   Mentions:
    9. Markov-modulated continuous-time Markov chains to identify site- and branch-specific evolutionary variation in BEAST. Syst Biol. 2020 May 16. Baele G, Gill MS, Bastide P, Lemey P, Suchard MA. PMID: 32415977.
      View in: PubMed   Mentions:    Fields:    
    10. An international characterisation of patients hospitalised with COVID-19 and a comparison with those previously hospitalised with influenza. medRxiv. 2020 Apr 25. Burn E, You SC, Sena AG, Kostka K, Abedtash H, Abrahão MTF, Alberga A, Alghoul H, Alser O, Alshammari TM, Areia C, Banda JM, Cho J, Culhane AC, Davydov A, DeFalco FJ, Duarte-Salles T, DuVall S, Falconer T, Gao W, Golozar A, Hardin J, Hripcsak G, Huser V, Jeon H, Jing Y, Jung CY, Kaas-Hansen BS, Kaduk D, Kent S, Kim Y, Kolovos S, Lane JCE, Lee H, Lynch KE, Makadia R, Matheny ME, Mehta P, Morales DR, Natarajan K, Nyberg F, Ostropolets A, Park RW, Park J, Posada JD, Prats-Uribe A, Rao G, Reich C, Rho Y, Rijnbeek P, Sathappan SMK, Schilling LM, Schuemie M, Shah NH, Shoaibi A, Song S, Spotnitz M, Suchard MA, Swerdel JN, Vizcaya D, Volpe S, Wen H, Williams AE, Yimer BB, Zhang L, Zhuk O, Prieto-Alhambra D, Ryan P. PMID: 32511443.
      View in: PubMed   Mentions:
    11. Incorporating heterogeneous sampling probabilities in continuous phylogeographic inference - Application to H5N1 spread in the Mekong region. Bioinformatics. 2020 Apr 01; 36(7):2098-2104. Dellicour S, Lemey P, Artois J, Lam TT, Fusaro A, Monne I, Cattoli G, Kuznetsov D, Xenarios I, Dauphin G, Kalpravidh W, Von Dobschuetz S, Claes F, Newman SH, Suchard MA, Baele G, Gilbert M. PMID: 31790143.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCellsPHPublic Health
    12. A surrogate l0 sparse Cox's regression with applications to sparse high-dimensional massive sample size time-to-event data. Stat Med. 2020 03 15; 39(6):675-686. Kawaguchi ES, Suchard MA, Liu Z, Li G. PMID: 31814146.
      View in: PubMed   Mentions:    Fields:    
    13. BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics. Syst Biol. 2019 11 01; 68(6):1052-1061. Ayres DL, Cummings MP, Baele G, Darling AE, Lewis PO, Swofford DL, Huelsenbeck JP, Lemey P, Rambaut A, Suchard MA. PMID: 31034053.
      View in: PubMed   Mentions: 7     Fields:    
    14. Comprehensive comparative effectiveness and safety of first-line antihypertensive drug classes: a systematic, multinational, large-scale analysis. Lancet. 2019 11 16; 394(10211):1816-1826. Suchard MA, Schuemie MJ, Krumholz HM, You SC, Chen R, Pratt N, Reich CG, Duke J, Madigan D, Hripcsak G, Ryan PB. PMID: 31668726.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    15. Comparison of First-Line Dual Combination Treatments in Hypertension: Real-World Evidence from Multinational Heterogeneous Cohorts. Korean Circ J. 2020 Jan; 50(1):52-68. You SC, Jung S, Swerdel JN, Ryan PB, Schuemie MJ, Suchard MA, Lee S, Cho J, Hripcsak G, Park RW, Park S. PMID: 31642211.
      View in: PubMed   Mentions:
    16. A plea to stop using the case-control design in retrospective database studies. Stat Med. 2019 09 30; 38(22):4199-4208. Schuemie MJ, Ryan PB, Man KKC, Wong ICK, Suchard MA, Hripcsak G. PMID: 31436848.
      View in: PubMed   Mentions: 1     Fields:    
    17. Bayesian Inference of Evolutionary Histories under Time-Dependent Substitution Rates. Mol Biol Evol. 2019 08 01; 36(8):1793-1803. Membrebe JV, Suchard MA, Rambaut A, Baele G, Lemey P. PMID: 31004175.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    18. Comment on "How pharmacoepidemiology networks can manage distributed analyses to improve replicability and transparency and minimize bias". Pharmacoepidemiol Drug Saf. 2019 07; 28(7):1032-1033. Schuemie MJ, Madigan D, Ryan PB, Reich C, Suchard MA, Berlin JA, Hripcsak G. PMID: 31066478.
      View in: PubMed   Mentions:    Fields:    
    19. BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. PLoS Comput Biol. 2019 04; 15(4):e1006650. Bouckaert R, Vaughan TG, Barido-Sottani J, Duchêne S, Fourment M, Gavryushkina A, Heled J, Jones G, Kühnert D, De Maio N, Matschiner M, Mendes FK, Müller NF, Ogilvie HA, du Plessis L, Popinga A, Rambaut A, Rasmussen D, Siveroni I, Suchard MA, Wu CH, Xie D, Zhang C, Stadler T, Drummond AJ. PMID: 30958812.
      View in: PubMed   Mentions: 53     Fields:    Translation:HumansAnimals
    20. High-Performance Computing in Bayesian Phylogenetics and Phylodynamics Using BEAGLE. Methods Mol Biol. 2019; 1910:691-722. Baele G, Ayres DL, Rambaut A, Suchard MA, Lemey P. PMID: 31278682.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    21. Evaluating large-scale propensity score performance through real-world and synthetic data experiments. Int J Epidemiol. 2018 12 01; 47(6):2005-2014. Tian Y, Schuemie MJ, Suchard MA. PMID: 29939268.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    22. Recent advances in computational phylodynamics. Curr Opin Virol. 2018 08; 31:24-32. Baele G, Dellicour S, Suchard MA, Lemey P, Vrancken B. PMID: 30248578.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    23. Improving reproducibility by using high-throughput observational studies with empirical calibration. Philos Trans A Math Phys Eng Sci. 2018 Sep 13; 376(2128). Schuemie MJ, Ryan PB, Hripcsak G, Madigan D, Suchard MA. PMID: 30082302.
      View in: PubMed   Mentions: 7     Fields:    
    24. Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7. Syst Biol. 2018 09 01; 67(5):901-904. Rambaut A, Drummond AJ, Xie D, Baele G, Suchard MA. PMID: 29718447.
      View in: PubMed   Mentions: 231     Fields:    
    25. Design and implementation of a standardized framework to generate and evaluate patient-level prediction models using observational healthcare data. J Am Med Inform Assoc. 2018 08 01; 25(8):969-975. Reps JM, Schuemie MJ, Suchard MA, Ryan PB, Rijnbeek PR. PMID: 29718407.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    26. Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak. Nat Commun. 2018 06 08; 9(1):2222. Dellicour S, Baele G, Dudas G, Faria NR, Pybus OG, Suchard MA, Rambaut A, Lemey P. PMID: 29884821.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCellsPHPublic Health
    27. Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10. Virus Evol. 2018 Jan; 4(1):vey016. Suchard MA, Lemey P, Baele G, Ayres DL, Drummond AJ, Rambaut A. PMID: 29942656.
      View in: PubMed   Mentions:
    28. Phylogenetic Factor Analysis. Syst Biol. 2018 May 01; 67(3):384-399. Tolkoff MR, Alfaro ME, Baele G, Lemey P, Suchard MA. PMID: 28950376.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    29. Empirical confidence interval calibration for population-level effect estimation studies in observational healthcare data. Proc Natl Acad Sci U S A. 2018 03 13; 115(11):2571-2577. Schuemie MJ, Hripcsak G, Ryan PB, Madigan D, Suchard MA. PMID: 29531023.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    30. Birth/birth-death processes and their computable transition probabilities with biological applications. J Math Biol. 2018 03; 76(4):911-944. Ho LST, Xu J, Crawford FW, Minin VN, Suchard MA. PMID: 28741177.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsPHPublic Health
    31. Risk of angioedema associated with levetiracetam compared with phenytoin: Findings of the observational health data sciences and informatics research network. Epilepsia. 2017 08; 58(8):e101-e106. Duke JD, Ryan PB, Suchard MA, Hripcsak G, Jin P, Reich C, Schwalm MS, Khoma Y, Wu Y, Xu H, Shah NH, Banda JM, Schuemie MJ. PMID: 28681416.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    32. Adaptive MCMC in Bayesian phylogenetics: an application to analyzing partitioned data in BEAST. Bioinformatics. 2017 Jun 15; 33(12):1798-1805. Baele G, Lemey P, Rambaut A, Suchard MA. PMID: 28200071.
      View in: PubMed   Mentions: 4     Fields:    
    33. A Relaxed Directional Random Walk Model for Phylogenetic Trait Evolution. Syst Biol. 2017 05 01; 66(3):299-319. Gill MS, Tung Ho LS, Baele G, Lemey P, Suchard MA. PMID: 27798403.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    34. Virus genomes reveal factors that spread and sustained the Ebola epidemic. Nature. 2017 04 20; 544(7650):309-315. Dudas G, Carvalho LM, Bedford T, Tatem AJ, Baele G, Faria NR, Park DJ, Ladner JT, Arias A, Asogun D, Bielejec F, Caddy SL, Cotten M, D'Ambrozio J, Dellicour S, Di Caro A, Diclaro JW, Duraffour S, Elmore MJ, Fakoli LS, Faye O, Gilbert ML, Gevao SM, Gire S, Gladden-Young A, Gnirke A, Goba A, Grant DS, Haagmans BL, Hiscox JA, Jah U, Kugelman JR, Liu D, Lu J, Malboeuf CM, Mate S, Matthews DA, Matranga CB, Meredith LW, Qu J, Quick J, Pas SD, Phan MVT, Pollakis G, Reusken CB, Sanchez-Lockhart M, Schaffner SF, Schieffelin JS, Sealfon RS, Simon-Loriere E, Smits SL, Stoecker K, Thorne L, Tobin EA, Vandi MA, Watson SJ, West K, Whitmer S, Wiley MR, Winnicki SM, Wohl S, Wölfel R, Yozwiak NL, Andersen KG, Blyden SO, Bolay F, Carroll MW, Dahn B, Diallo B, Formenty P, Fraser C, Gao GF, Garry RF, Goodfellow I, Günther S, Happi CT, Holmes EC, Kargbo B, Keïta S, Kellam P, Koopmans MPG, Kuhn JH, Loman NJ, Magassouba N, Naidoo D, Nichol ST, Nyenswah T, Palacios G, Pybus OG, Sabeti PC, Sall A, Ströher U, Wurie I, Suchard MA, Lemey P, Rambaut A. PMID: 28405027.
      View in: PubMed   Mentions: 67     Fields:    Translation:HumansCellsPHPublic Health
    35. Bayesian phylogeography of influenza A/H3N2 for the 2014-15 season in the United States using three frameworks of ancestral state reconstruction. PLoS Comput Biol. 2017 02; 13(2):e1005389. Magee D, Suchard MA, Scotch M. PMID: 28170397.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCellsPHPublic Health
    36. Bayesian nonparametric clustering in phylogenetics: modeling antigenic evolution in influenza. Stat Med. 2018 Jan 30; 37(2):195-206. Cybis GB, Sinsheimer JS, Bedford T, Rambaut A, Lemey P, Suchard MA. PMID: 28098392.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    37. Emerging Concepts of Data Integration in Pathogen Phylodynamics. Syst Biol. 2017 01 01; 66(1):e47-e65. Baele G, Suchard MA, Rambaut A, Lemey P. PMID: 28173504.
      View in: PubMed   Mentions: 13     Fields:    Translation:Cells
    38. Robust empirical calibration of p-values using observational data. Stat Med. 2016 09 30; 35(22):3883-8. Schuemie MJ, Hripcsak G, Ryan PB, Madigan D, Suchard MA. PMID: 27592566.
      View in: PubMed   Mentions: 5     Fields:    
    39. Hierarchical Models for Multiple, Rare Outcomes Using Massive Observational Healthcare Databases. Stat Anal Data Min. 2016 Aug; 9(4):260-268. Shaddox TR, Ryan PB, Schuemie MJ, Madigan D, Suchard MA. PMID: 28503249.
      View in: PubMed   Mentions:
    40. Understanding Past Population Dynamics: Bayesian Coalescent-Based Modeling with Covariates. Syst Biol. 2016 Nov; 65(6):1041-1056. Gill MS, Lemey P, Bennett SN, Biek R, Suchard MA. PMID: 27368344.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCells
    41. Bayesian codon substitution modelling to identify sources of pathogen evolutionary rate variation. Microb Genom. 2016 06; 2(6):e000057. Baele G, Suchard MA, Bielejec F, Lemey P. PMID: 28348854.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    42. Characterizing treatment pathways at scale using the OHDSI network. Proc Natl Acad Sci U S A. 2016 07 05; 113(27):7329-36. Hripcsak G, Ryan PB, Duke JD, Shah NH, Park RW, Huser V, Suchard MA, Schuemie MJ, DeFalco FJ, Perotte A, Banda JM, Reich CG, Schilling LM, Matheny ME, Meeker D, Pratt N, Madigan D. PMID: 27274072.
      View in: PubMed   Mentions: 41     Fields:    Translation:Humans
    43. SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes. Mol Biol Evol. 2016 08; 33(8):2167-9. Bielejec F, Baele G, Vrancken B, Suchard MA, Rambaut A, Lemey P. PMID: 27189542.
      View in: PubMed   Mentions: 39     Fields:    
    44. Quantifying and Mitigating the Effect of Preferential Sampling on Phylodynamic Inference. PLoS Comput Biol. 2016 Mar; 12(3):e1004789. Karcher MD, Palacios JA, Bedford T, Suchard MA, Minin VN. PMID: 26938243.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    45. Genealogical Working Distributions for Bayesian Model Testing with Phylogenetic Uncertainty. Syst Biol. 2016 Mar; 65(2):250-64. Baele G, Lemey P, Suchard MA. PMID: 26526428.
      View in: PubMed   Mentions: 13     Fields:    
    46. Global circulation patterns of seasonal influenza viruses vary with antigenic drift. Nature. 2015 Jul 09; 523(7559):217-20. Bedford T, Riley S, Barr IG, Broor S, Chadha M, Cox NJ, Daniels RS, Gunasekaran CP, Hurt AC, Kelso A, Klimov A, Lewis NS, Li X, McCauley JW, Odagiri T, Potdar V, Rambaut A, Shu Y, Skepner E, Smith DJ, Suchard MA, Tashiro M, Wang D, Xu X, Lemey P, Russell CA. PMID: 26053121.
      View in: PubMed   Mentions: 98     Fields:    Translation:HumansCells
    47. ASSESSING PHENOTYPIC CORRELATION THROUGH THE MULTIVARIATE PHYLOGENETIC LATENT LIABILITY MODEL. Ann Appl Stat. 2015 Jun; 9(2):969-991. Cybis GB, Sinsheimer JS, Bedford T, Mather AE, Lemey P, Suchard MA. PMID: 27053974.
      View in: PubMed   Mentions:
    48. Global migration of influenza A viruses in swine. Nat Commun. 2015 Mar 27; 6:6696. Nelson MI, Viboud C, Vincent AL, Culhane MR, Detmer SE, Wentworth DE, Rambaut A, Suchard MA, Holmes EC, Lemey P. PMID: 25813399.
      View in: PubMed   Mentions: 32     Fields:    Translation:AnimalsCells
    49. Simultaneously estimating evolutionary history and repeated traits phylogenetic signal: applications to viral and host phenotypic evolution. Methods Ecol Evol. 2015 Jan 01; 6(1):67-82. Vrancken B, Lemey P, Rambaut A, Bedford T, Longdon B, Günthard HF, Suchard MA. PMID: 25780554.
      View in: PubMed   Mentions:
    50. SEX, LIES AND SELF-REPORTED COUNTS: BAYESIAN MIXTURE MODELS FOR HEAPING IN LONGITUDINAL COUNT DATA VIA BIRTH-DEATH PROCESSES. Ann Appl Stat. 2015; 9(2):572-596. Crawford FW, Weiss RE, Suchard MA. PMID: 26500711.
      View in: PubMed   Mentions:
    51. HIV epidemiology. The early spread and epidemic ignition of HIV-1 in human populations. Science. 2014 10 03; 346(6205):56-61. Faria NR, Rambaut A, Suchard MA, Baele G, Bedford T, Ward MJ, Tatem AJ, Sousa JD, Arinaminpathy N, Pépin J, Posada D, Peeters M, Pybus OG, Lemey P. PMID: 25278604.
      View in: PubMed   Mentions: 130     Fields:    Translation:HumansCellsPHPublic Health
    52. pBUSS: a parallel BEAST/BEAGLE utility for sequence simulation under complex evolutionary scenarios. BMC Bioinformatics. 2014 May 07; 15:133. Bielejec F, Lemey P, Carvalho LM, Baele G, Rambaut A, Suchard MA. PMID: 24885610.
      View in: PubMed   Mentions: 10     Fields:    
    53. OutbreakTools: a new platform for disease outbreak analysis using the R software. Epidemics. 2014 Jun; 7:28-34. Jombart T, Aanensen DM, Baguelin M, Birrell P, Cauchemez S, Camacho A, Colijn C, Collins C, Cori A, Didelot X, Fraser C, Frost S, Hens N, Hugues J, Höhle M, Opatowski L, Rambaut A, Ratmann O, Soubeyrand S, Suchard MA, Wallinga J, Ypma R, Ferguson N. PMID: 24928667.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansPHPublic Health
    54. BEAST 2: a software platform for Bayesian evolutionary analysis. PLoS Comput Biol. 2014 Apr; 10(4):e1003537. Bouckaert R, Heled J, Kühnert D, Vaughan T, Wu CH, Xie D, Suchard MA, Rambaut A, Drummond AJ. PMID: 24722319.
      View in: PubMed   Mentions: 707     Fields:    
    55. The genealogical population dynamics of HIV-1 in a large transmission chain: bridging within and among host evolutionary rates. PLoS Comput Biol. 2014 Apr; 10(4):e1003505. Vrancken B, Rambaut A, Suchard MA, Drummond A, Baele G, Derdelinckx I, Van Wijngaerden E, Vandamme AM, Van Laethem K, Lemey P. PMID: 24699231.
      View in: PubMed   Mentions: 39     Fields:    Translation:HumansCells
    56. Inferring heterogeneous evolutionary processes through time: from sequence substitution to phylogeography. Syst Biol. 2014 Jul; 63(4):493-504. Bielejec F, Lemey P, Baele G, Rambaut A, Suchard MA. PMID: 24627184.
      View in: PubMed   Mentions: 18     Fields:    Translation:HumansAnimalsCells
    57. Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2. PLoS Pathog. 2014 Feb; 10(2):e1003932. Lemey P, Rambaut A, Bedford T, Faria N, Bielejec F, Baele G, Russell CA, Smith DJ, Pybus OG, Brockmann D, Suchard MA. PMID: 24586153.
      View in: PubMed   Mentions: 93     Fields:    Translation:HumansCells
    58. Integrating influenza antigenic dynamics with molecular evolution. Elife. 2014; 3:e01914. Bedford T, Suchard MA, Lemey P, Dudas G, Gregory V, Hay AJ, McCauley JW, Russell CA, Smith DJ, Rambaut A. PMID: 24497547.
      View in: PubMed   Mentions: 84     Fields:    Translation:HumansCells
    59. On the biogeography of Centipeda: a species-tree diffusion approach. Syst Biol. 2014 Mar; 63(2):178-91. Nylinder S, Lemey P, De Bruyn M, Suchard MA, Pfeil BE, Walsh N, Anderberg AA. PMID: 24335493.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    60. Multiple self-controlled case series for large-scale longitudinal observational databases. Biometrics. 2013 Dec; 69(4):893-902. Simpson SE, Madigan D, Zorych I, Schuemie MJ, Ryan PB, Suchard MA. PMID: 24117144.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansPHPublic Health
    61. High-dimensional, massive sample-size Cox proportional hazards regression for survival analysis. Biostatistics. 2014 Apr; 15(2):207-21. Mittal S, Madigan D, Burd RS, Suchard MA. PMID: 24096388.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    62. Empirical performance of the self-controlled case series design: lessons for developing a risk identification and analysis system. Drug Saf. 2013 Oct; 36 Suppl 1:S83-93. Suchard MA, Zorych I, Simpson SE, Schuemie MJ, Ryan PB, Madigan D. PMID: 24166226.
      View in: PubMed   Mentions: 13     Fields:    Translation:Humans
    63. A comparison of the empirical performance of methods for a risk identification system. Drug Saf. 2013 Oct; 36 Suppl 1:S143-58. Ryan PB, Stang PE, Overhage JM, Suchard MA, Hartzema AG, DuMouchel W, Reich CG, Schuemie MJ, Madigan D. PMID: 24166231.
      View in: PubMed   Mentions: 24     Fields:    Translation:Humans
    64. The impact of drug and outcome prevalence on the feasibility and performance of analytical methods for a risk identification and analysis system. Drug Saf. 2013 Oct; 36 Suppl 1:S195-204. Reich CG, Ryan PB, Suchard MA. PMID: 24166235.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    65. Discussion: An estimate of the science-wise false discovery rate and application to the top medical literature. Biostatistics. 2014 Jan; 15(1):36-9; discussion 39-45. Schuemie MJ, Ryan PB, Suchard MA, Shahn Z, Madigan D. PMID: 24068252.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    66. Interpreting observational studies: why empirical calibration is needed to correct p-values. Stat Med. 2014 Jan 30; 33(2):209-18. Schuemie MJ, Ryan PB, DuMouchel W, Suchard MA, Madigan D. PMID: 23900808.
      View in: PubMed   Mentions: 38     Fields:    Translation:Humans
    67. Evaluating the impact of database heterogeneity on observational study results. Am J Epidemiol. 2013 Aug 15; 178(4):645-51. Madigan D, Ryan PB, Schuemie M, Stang PE, Overhage JM, Hartzema AG, Suchard MA, DuMouchel W, Berlin JA. PMID: 23648805.
      View in: PubMed   Mentions: 45     Fields:    Translation:Humans
    68. Diversity, disparity, and evolutionary rate estimation for unresolved Yule trees. Syst Biol. 2013 May 01; 62(3):439-55. Crawford FW, Suchard MA. PMID: 23417679.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    69. Simultaneously reconstructing viral cross-species transmission history and identifying the underlying constraints. Philos Trans R Soc Lond B Biol Sci. 2013 Mar 19; 368(1614):20120196. Faria NR, Suchard MA, Rambaut A, Streicker DG, Lemey P. PMID: 23382420.
      View in: PubMed   Mentions: 43     Fields:    Translation:Animals
    70. Graph hierarchies for phylogeography. Philos Trans R Soc Lond B Biol Sci. 2013 Mar 19; 368(1614):20120206. Cybis GB, Sinsheimer JS, Lemey P, Suchard MA. PMID: 23382428.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    71. Massive parallelization of serial inference algorithms for a complex generalized linear model. ACM Trans Model Comput Simul. 2013 Jan; 23(1). Suchard MA, Simpson SE, Zorych I, Ryan P, Madigan D. PMID: 25328363.
      View in: PubMed   Mentions:
    72. Bayesian selection of nucleotide substitution models and their site assignments. Mol Biol Evol. 2013 Mar; 30(3):669-88. Wu CH, Suchard MA, Drummond AJ. PMID: 23233462.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansAnimalsCells
    73. Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci. Mol Biol Evol. 2013 Mar; 30(3):713-24. Gill MS, Lemey P, Faria NR, Rambaut A, Shapiro B, Suchard MA. PMID: 23180580.
      View in: PubMed   Mentions: 106     Fields:    Translation:HumansCells
    74. Accurate model selection of relaxed molecular clocks in bayesian phylogenetics. Mol Biol Evol. 2013 Feb; 30(2):239-43. Baele G, Li WL, Drummond AJ, Suchard MA, Lemey P. PMID: 23090976.
      View in: PubMed   Mentions: 127     Fields:    Translation:HumansAnimals
    75. A counting renaissance: combining stochastic mapping and empirical Bayes to quickly detect amino acid sites under positive selection. Bioinformatics. 2012 Dec 15; 28(24):3248-56. Lemey P, Minin VN, Bielejec F, Kosakovsky Pond SL, Suchard MA. PMID: 23064000.
      View in: PubMed   Mentions: 30     Fields:    Translation:Cells
    76. Unifying the spatial epidemiology and molecular evolution of emerging epidemics. Proc Natl Acad Sci U S A. 2012 Sep 11; 109(37):15066-71. Pybus OG, Suchard MA, Lemey P, Bernardin FJ, Rambaut A, Crawford FW, Gray RR, Arinaminpathy N, Stramer SL, Busch MP, Delwart EL. PMID: 22927414.
      View in: PubMed   Mentions: 64     Fields:    Translation:HumansCells
    77. A novel empirical mutual information approach to identify co-evolving amino acid positions of influenza A viruses. Comput Biol Chem. 2012 Aug; 39:20-8. Gong YN, Chen GW, Suchard MA. PMID: 22858722.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    78. Molecular dating of human-to-bovid host jumps by Staphylococcus aureus reveals an association with the spread of domestication. Biol Lett. 2012 Oct 23; 8(5):829-32. Weinert LA, Welch JJ, Suchard MA, Lemey P, Rambaut A, Fitzgerald JR. PMID: 22628096.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansAnimalsCells
    79. Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty. Mol Biol Evol. 2012 Sep; 29(9):2157-67. Baele G, Lemey P, Bedford T, Rambaut A, Suchard MA, Alekseyenko AV. PMID: 22403239.
      View in: PubMed   Mentions: 262     Fields:    Translation:HumansCells
    80. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol. 2012 Aug; 29(8):1969-73. Drummond AJ, Suchard MA, Xie D, Rambaut A. PMID: 22367748.
      View in: PubMed   Mentions: 2115     Fields:    Translation:AnimalsCells
    81. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 2012 May; 61(3):539-42. Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. PMID: 22357727.
      View in: PubMed   Mentions: 2780     Fields:    
    82. Phylogeography and population dynamics of dengue viruses in the Americas. Mol Biol Evol. 2012 Jun; 29(6):1533-43. Allicock OM, Lemey P, Tatem AJ, Pybus OG, Bennett SN, Mueller BA, Suchard MA, Foster JE, Rambaut A, Carrington CV. PMID: 22319149.
      View in: PubMed   Mentions: 43     Fields:    Translation:HumansCellsPHPublic Health
    83. Does history repeat itself? Wavelets and the phylodynamics of influenza A. Mol Biol Evol. 2012 May; 29(5):1367-77. Tom JA, Sinsheimer JS, Suchard MA. PMID: 22160768.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCellsPHPublic Health
    84. Species-specific responses of Late Quaternary megafauna to climate and humans. Nature. 2011 Nov 02; 479(7373):359-64. Lorenzen ED, Nogués-Bravo D, Orlando L, Weinstock J, Binladen J, Marske KA, Ugan A, Borregaard MK, Gilbert MT, Nielsen R, Ho SY, Goebel T, Graf KE, Byers D, Stenderup JT, Rasmussen M, Campos PF, Leonard JA, Koepfli KP, Froese D, Zazula G, Stafford TW, Aaris-Sørensen K, Batra P, Haywood AM, Singarayer JS, Valdes PJ, Boeskorov G, Burns JA, Davydov SP, Haile J, Jenkins DL, Kosintsev P, Kuznetsova T, Lai X, Martin LD, McDonald HG, Mol D, Meldgaard M, Munch K, Stephan E, Sablin M, Sommer RS, Sipko T, Scott E, Suchard MA, Tikhonov A, Willerslev R, Wayne RK, Cooper A, Hofreiter M, Sher A, Shapiro B, Rahbek C, Willerslev E. PMID: 22048313.
      View in: PubMed   Mentions: 96     Fields:    Translation:HumansAnimals
    85. Toward a quantitative understanding of viral phylogeography. Curr Opin Virol. 2011 Nov; 1(5):423-9. Faria NR, Suchard MA, Rambaut A, Lemey P. PMID: 22440846.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansAnimalsCells
    86. Transition probabilities for general birth-death processes with applications in ecology, genetics, and evolution. J Math Biol. 2012 Sep; 65(3):553-80. Crawford FW, Suchard MA. PMID: 21984359.
      View in: PubMed   Mentions: 11     Fields:    
    87. BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics. Syst Biol. 2012 Jan; 61(1):170-3. Ayres DL, Darling A, Zwickl DJ, Beerli P, Holder MT, Lewis PO, Huelsenbeck JP, Ronquist F, Swofford DL, Cummings MP, Rambaut A, Suchard MA. PMID: 21963610.
      View in: PubMed   Mentions: 118     Fields:    
    88. SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics. Bioinformatics. 2011 Oct 15; 27(20):2910-2. Bielejec F, Rambaut A, Suchard MA, Lemey P. PMID: 21911333.
      View in: PubMed   Mentions: 139     Fields:    
    89. A Bayesian model for the common effects of multiple predictors on mixed outcomes. Interface Focus. 2011 Dec 06; 1(6):886-94. Weiss RE, Jia J, Suchard MA. PMID: 22419987.
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    90. Ancient hybridization and an Irish origin for the modern polar bear matriline. Curr Biol. 2011 Aug 09; 21(15):1251-8. Edwards CJ, Suchard MA, Lemey P, Welch JJ, Barnes I, Fulton TL, Barnett R, O'Connell TC, Coxon P, Monaghan N, Valdiosera CE, Lorenzen ED, Willerslev E, Baryshnikov GF, Rambaut A, Thomas MG, Bradley DG, Shapiro B. PMID: 21737280.
      View in: PubMed   Mentions: 62     Fields:    Translation:AnimalsCells
    91. Spatial dynamics of human-origin H1 influenza A virus in North American swine. PLoS Pathog. 2011 Jun; 7(6):e1002077. Nelson MI, Lemey P, Tan Y, Vincent A, Lam TT, Detmer S, Viboud C, Suchard MA, Rambaut A, Holmes EC, Gramer M. PMID: 21695237.
      View in: PubMed   Mentions: 34     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    92. Biologically inspired phylogenetic models strongly outperform the no common mechanism model. Syst Biol. 2011 Mar; 60(2):225-32. Huelsenbeck JP, Alfaro ME, Suchard MA. PMID: 21252385.
      View in: PubMed   Mentions: 3     Fields:    
    93. Modeling Protein Expression and Protein Signaling Pathways. J Am Stat Assoc. 2011; 107(500):1372-1384. Telesca D, Müller P, Kornblau SM, Suchard MA, Ji Y. PMID: 26246646.
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    94. Impact of CCR5delta32 host genetic background and disease progression on HIV-1 intrahost evolutionary processes: efficient hypothesis testing through hierarchical phylogenetic models. Mol Biol Evol. 2011 May; 28(5):1605-16. Edo-Matas D, Lemey P, Tom JA, Serna-Bolea C, van den Blink AE, van 't Wout AB, Schuitemaker H, Suchard MA. PMID: 21135151.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansCells
    95. Testing spatiotemporal hypothesis of bacterial evolution using methicillin-resistant Staphylococcus aureus ST239 genome-wide data within a bayesian framework. Mol Biol Evol. 2011 May; 28(5):1593-603. Gray RR, Tatem AJ, Johnson JA, Alekseyenko AV, Pybus OG, Suchard MA, Salemi M. PMID: 21112962.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansCells
    96. Phylodynamics and human-mediated dispersal of a zoonotic virus. PLoS Pathog. 2010 Oct 28; 6(10):e1001166. Talbi C, Lemey P, Suchard MA, Abdelatif E, Elharrak M, Nourlil J, Jalal N, Faouzi A, Echevarría JE, Vazquez Morón S, Rambaut A, Campiz N, Tatem AJ, Holmes EC, Bourhy H. PMID: 21060816.
      View in: PubMed   Mentions: 49     Fields:    Translation:HumansAnimalsCells
    97. A Bayesian phylogenetic method to estimate unknown sequence ages. Mol Biol Evol. 2011 Feb; 28(2):879-87. Shapiro B, Ho SY, Drummond AJ, Suchard MA, Pybus OG, Rambaut A. PMID: 20889726.
      View in: PubMed   Mentions: 46     Fields:    Translation:AnimalsCells
    98. Bayesian random local clocks, or one rate to rule them all. BMC Biol. 2010 Aug 31; 8:114. Drummond AJ, Suchard MA. PMID: 20807414.
      View in: PubMed   Mentions: 84     Fields:    Translation:Animals
    99. Yellow fever virus maintenance in Trinidad and its dispersal throughout the Americas. J Virol. 2010 Oct; 84(19):9967-77. Auguste AJ, Lemey P, Pybus OG, Suchard MA, Salas RA, Adesiyun AA, Barrett AD, Tesh RB, Weaver SC, Carrington CV. PMID: 20631128.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansAnimalsCells
    100. Understanding GPU Programming for Statistical Computation: Studies in Massively Parallel Massive Mixtures. J Comput Graph Stat. 2010 Jun 01; 19(2):419-438. Suchard MA, Wang Q, Chan C, Frelinger J, Cron A, West M. PMID: 20877443.
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    101. Evolution and recombination of genes encoding HIV-1 drug resistance and tropism during antiretroviral therapy. Virology. 2010 Aug 15; 404(1):5-20. Shi B, Kitchen C, Weiser B, Mayers D, Foley B, Kemal K, Anastos K, Suchard M, Parker M, Brunner C, Burger H. PMID: 20451945.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    102. Using time-structured data to estimate evolutionary rates of double-stranded DNA viruses. Mol Biol Evol. 2010 Sep; 27(9):2038-51. Firth C, Kitchen A, Shapiro B, Suchard MA, Holmes EC, Rambaut A. PMID: 20363828.
      View in: PubMed   Mentions: 80     Fields:    Translation:Cells
    103. Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus) population dynamics. Proc Natl Acad Sci U S A. 2010 Mar 23; 107(12):5675-80. Campos PF, Willerslev E, Sher A, Orlando L, Axelsson E, Tikhonov A, Aaris-Sørensen K, Greenwood AD, Kahlke RD, Kosintsev P, Krakhmalnaya T, Kuznetsova T, Lemey P, MacPhee R, Norris CA, Shepherd K, Suchard MA, Zazula GD, Shapiro B, Gilbert MT. PMID: 20212118.
      View in: PubMed   Mentions: 36     Fields:    Translation:HumansAnimals
    104. Phylogeography takes a relaxed random walk in continuous space and time. Mol Biol Evol. 2010 Aug; 27(8):1877-85. Lemey P, Rambaut A, Welch JJ, Suchard MA. PMID: 20203288.
      View in: PubMed   Mentions: 131     Fields:    Translation:AnimalsPHPublic Health
    105. Reuse, Recycle, Reweigh: Combating Influenza through Efficient Sequential Bayesian Computation for Massive Data. Ann Appl Stat. 2010; 4(4):1722-1748. Tom JA, Sinsheimer JS, Suchard MA. PMID: 26681992.
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    106. Unifying vertical and nonvertical evolution: a stochastic ARG-based framework. Syst Biol. 2010 Jan; 59(1):27-41. Bloomquist EW, Suchard MA. PMID: 20525618.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    107. Bayesian phylogeography finds its roots. PLoS Comput Biol. 2009 Sep; 5(9):e1000520. Lemey P, Rambaut A, Drummond AJ, Suchard MA. PMID: 19779555.
      View in: PubMed   Mentions: 447     Fields:    Translation:HumansAnimalsCells
    108. Reconstructing the initial global spread of a human influenza pandemic: A Bayesian spatial-temporal model for the global spread of H1N1pdm. PLoS Curr. 2009 Sep 02; 1:RRN1031. Lemey P, Suchard M, Rambaut A. PMID: 20029613.
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    109. Improving phylogenetic analyses by incorporating additional information from genetic sequence databases. Bioinformatics. 2009 Oct 01; 25(19):2530-6. Liang LJ, Weiss RE, Redelings B, Suchard MA. PMID: 19661240.
      View in: PubMed   Mentions: 2     Fields:    
    110. Many-core algorithms for statistical phylogenetics. Bioinformatics. 2009 Jun 01; 25(11):1370-6. Suchard MA, Rambaut A. PMID: 19369496.
      View in: PubMed   Mentions: 113     Fields:    
    111. Two-way Bayesian hierarchical phylogenetic models: An application to the co-evolution of gp120 and gp41 during and after enfuvirtide treatment. Comput Stat Data Anal. 2009 Jan 15; 53(3):766-775. Kitchen CM, Kroll J, Kuritzkes DR, Bloomquist E, Deeks SG, Suchard MA. PMID: 20442796.
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    112. Learning to count: robust estimates for labeled distances between molecular sequences. Mol Biol Evol. 2009 Apr; 26(4):801-14. O'Brien JD, Minin VN, Suchard MA. PMID: 19131426.
      View in: PubMed   Mentions: 46     Fields:    Translation:Cells
    113. Fully Bayesian tests of neutrality using genealogical summary statistics. BMC Genet. 2008 Oct 31; 9:68. Drummond AJ, Suchard MA. PMID: 18976476.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    114. Wagner and Dollo: a stochastic duet by composing two parsimonious solos. Syst Biol. 2008 Oct; 57(5):772-84. Alekseyenko AV, Lee CJ, Suchard MA. PMID: 18853363.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimalsCells
    115. StepBrothers: inferring partially shared ancestries among recombinant viral sequences. Biostatistics. 2009 Jan; 10(1):106-20. Bloomquist EW, Dorman KS, Suchard MA. PMID: 18562348.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    116. Dating the time of viral subtype divergence. BMC Evol Biol. 2008 Jun 09; 8:172. O'Brien JD, She ZS, Suchard MA. PMID: 18541033.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    117. Pomegranate juice and extracts provide similar levels of plasma and urinary ellagitannin metabolites in human subjects. J Med Food. 2008 Jun; 11(2):390-4. Seeram NP, Zhang Y, McKeever R, Henning SM, Lee RP, Suchard MA, Li Z, Chen S, Thames G, Zerlin A, Nguyen M, Wang D, Dreher M, Heber D. PMID: 18598186.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansAnimals
    118. Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics. Mol Biol Evol. 2008 Jul; 25(7):1459-71. Minin VN, Bloomquist EW, Suchard MA. PMID: 18408232.
      View in: PubMed   Mentions: 206     Fields:    Translation:HumansCells
    119. Alignment uncertainty and genomic analysis. Science. 2008 Jan 25; 319(5862):473-6. Wong KM, Suchard MA, Huelsenbeck JP. PMID: 18218900.
      View in: PubMed   Mentions: 109     Fields:    Translation:AnimalsCells
    120. Representational oligonucleotide microarray analysis (ROMA) and comparison of binning and change-point methods of analysis: application to detection of del22q11.2 (DiGeorge) syndrome. Hum Mutat. 2008 Jan; 29(1):176-81. Stanczak CM, Chen Z, Nelson SF, Suchard M, McCabe ER, McGhee S. PMID: 17694540.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    121. A nonparametric method for accommodating and testing across-site rate variation. Syst Biol. 2007 Dec; 56(6):975-87. Huelsenbeck JP, Suchard MA. PMID: 18075934.
      View in: PubMed   Mentions: 16     Fields:    
    122. Validation of candidate serum ovarian cancer biomarkers for early detection. Biomark Insights. 2007 Oct 16; 2:369-75. Su F, Lang J, Kumar A, Ng C, Hsieh B, Suchard MA, Reddy ST, Farias-Eisner R. PMID: 19662218.
      View in: PubMed   Mentions:
    123. Counting labeled transitions in continuous-time Markov models of evolution. J Math Biol. 2008 Mar; 56(3):391-412. Minin VN, Suchard MA. PMID: 17874105.
      View in: PubMed   Mentions: 91     Fields:    
    124. Development of an advanced electrochemical DNA biosensor for bacterial pathogen detection. J Mol Diagn. 2007 Apr; 9(2):158-68. Liao JC, Mastali M, Li Y, Gau V, Suchard MA, Babbitt J, Gornbein J, Landaw EM, McCabe ER, Churchill BM, Haake DA. PMID: 17384207.
      View in: PubMed   Mentions: 23     Fields:    Translation:Cells
    125. Incorporating indel information into phylogeny estimation for rapidly emerging pathogens. BMC Evol Biol. 2007 Mar 14; 7:40. Redelings BD, Suchard MA. PMID: 17359539.
      View in: PubMed   Mentions: 17     Fields:    Translation:Cells
    126. Phylogenetic mapping of recombination hotspots in human immunodeficiency virus via spatially smoothed change-point processes. Genetics. 2007 Apr; 175(4):1773-85. Minin VN, Dorman KS, Fang F, Suchard MA. PMID: 17194781.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansAnimalsCells
    127. cBrother: relaxing parental tree assumptions for Bayesian recombination detection. Bioinformatics. 2007 Feb 15; 23(4):507-8. Fang F, Ding J, Minin VN, Suchard MA, Dorman KS. PMID: 17145740.
      View in: PubMed   Mentions: 8     Fields:    Translation:Cells
    128. Continued evolution in gp41 after interruption of enfuvirtide in subjects with advanced HIV type 1 disease. AIDS Res Hum Retroviruses. 2006 Dec; 22(12):1260-6. Kitchen CM, Lu J, Suchard MA, Hoh R, Martin JN, Kuritzkes DR, Deeks SG. PMID: 17209769.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    129. Time squared: repeated measures on phylogenies. Mol Biol Evol. 2007 Feb; 24(2):352-62. Guo H, Weiss RE, Gu X, Suchard MA. PMID: 17079699.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimals
    130. Pomegranate juice ellagitannin metabolites are present in human plasma and some persist in urine for up to 48 hours. J Nutr. 2006 Oct; 136(10):2481-5. Seeram NP, Henning SM, Zhang Y, Suchard M, Li Z, Heber D. PMID: 16988113.
      View in: PubMed   Mentions: 73     Fields:    Translation:HumansAnimals
    131. Modeling of the temporal patterns of fluoxetine prescriptions and suicide rates in the United States. PLoS Med. 2006 Jun; 3(6):e190. Milane MS, Suchard MA, Wong ML, Licinio J. PMID: 16768544.
      View in: PubMed   Mentions: 21     Fields:    Translation:Humans
    132. BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny. Bioinformatics. 2006 Aug 15; 22(16):2047-8. Suchard MA, Redelings BD. PMID: 16679334.
      View in: PubMed   Mentions: 60     Fields:    Translation:Cells
    133. Models for estimating bayes factors with applications to phylogeny and tests of monophyly. Biometrics. 2005 Sep; 61(3):665-73. Suchard MA, Weiss RE, Sinsheimer JS. PMID: 16135017.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansCells
    134. Joint Bayesian estimation of alignment and phylogeny. Syst Biol. 2005 Jun; 54(3):401-18. Redelings BD, Suchard MA. PMID: 16012107.
      View in: PubMed   Mentions: 73     Fields:    Translation:Cells
    135. Dual multiple change-point model leads to more accurate recombination detection. Bioinformatics. 2005 Jul 01; 21(13):3034-42. Minin VN, Dorman KS, Fang F, Suchard MA. PMID: 15914546.
      View in: PubMed   Mentions: 53     Fields:    
    136. Stochastic models for horizontal gene transfer: taking a random walk through tree space. Genetics. 2005 May; 170(1):419-31. Suchard MA. PMID: 15781714.
      View in: PubMed   Mentions: 16     Fields:    Translation:Cells
    137. Bayesian estimation of recent migration rates after a spatial expansion. Genetics. 2005 May; 170(1):409-17. Hamilton G, Currat M, Ray N, Heckel G, Beaumont M, Excoffier L. PMID: 15716508.
      View in: PubMed   Mentions: 30     Fields:    Translation:AnimalsCells
    138. Early nodal response as a predictor for necessity of functional neck dissection after chemoradiation. Cancer J. 2004 Nov-Dec; 10(6):339-42. Vongtama R, Lee M, Kim B, Sercarz J, Lin K, Suchard MA, Lee SP, Juillard G. PMID: 15701264.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    139. Evolution of human immunodeficiency virus type 1 coreceptor usage during antiretroviral Therapy: a Bayesian approach. J Virol. 2004 Oct; 78(20):11296-302. Kitchen CM, Philpott S, Burger H, Weiser B, Anastos K, Suchard MA. PMID: 15452249.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCellsCTClinical Trials
    140. Alterations in the dynamics of circulating ghrelin, adiponectin, and leptin in human obesity. Proc Natl Acad Sci U S A. 2004 Jul 13; 101(28):10434-9. Yildiz BO, Suchard MA, Wong ML, McCann SM, Licinio J. PMID: 15231997.
      View in: PubMed   Mentions: 83     Fields:    Translation:HumansCells
    141. Hierarchical phylogenetic models for analyzing multipartite sequence data. Syst Biol. 2003 Oct; 52(5):649-64. Suchard MA, Kitchen CM, Sinsheimer JS, Weiss RE. PMID: 14530132.
      View in: PubMed   Mentions: 39     Fields:    Translation:HumansAnimalsCells
    142. Interplay of chemotaxis and chemokinesis mechanisms in bacterial dynamics. Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Aug; 68(2 Pt 1):021925. D'Orsogna MR, Suchard MA, Chou T. PMID: 14525024.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    143. Testing a molecular clock without an outgroup: derivations of induced priors on branch-length restrictions in a Bayesian framework. Syst Biol. 2003 Feb; 52(1):48-54. Suchard MA, Weiss RE, Sinsheimer JS. PMID: 12554439.
      View in: PubMed   Mentions: 6     Fields:    Translation:Animals
    144. Are you my mother? Bayesian phylogenetic inference of recombination among putative parental strains. Appl Bioinformatics. 2003; 2(3):131-44. Sinsheimer JS, Suchard MA, Dorman KS, Fang F, Weiss RE. PMID: 15130798.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    145. Oh brother, where art thou? A Bayes factor test for recombination with uncertain heritage. Syst Biol. 2002 Oct; 51(5):715-28. Suchard MA, Weiss RE, Dorman KS, Sinsheimer JS. PMID: 12396586.
      View in: PubMed   Mentions: 12     Fields:    Translation:Cells
    146. General practitioners' views on genetic screening for common diseases. Br J Gen Pract. 1999 Jan; 49(438):45-6. Suchard MA, Yudkin P, Sinsheimer JS, Fowler GH. PMID: 10622017.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
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