Marc Adam Suchard

Title(s)Professor, Human Genetics
SchoolMedicine
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    Other Positions
    Title(s)Professor, Computational Medicine


    Collapse Biography 
    Collapse Education and Training
    University of California, Los AngelesPhD2002Biomathematics
    University of California, Los AngelesMD2004

    Collapse Overview 

    Collapse Research 
    Collapse Research Activities and Funding
    Statistical innovation to integrate sequences and phenotypes for scalable phylodynamic inference
    NIH R01AI153044Apr 9, 2021 - Mar 31, 2025
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. How fast are viruses spreading in the wild? PLoS Biol. 2024 Dec; 22(12):e3002914. Dellicour S, Bastide P, Rocu P, Fargette D, Hardy OJ, Suchard MA, Guindon S, Lemey P. PMID: 39625970; PMCID: PMC11614233.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    2. Spread.gl: visualising pathogen dispersal in a high-performance browser application. Bioinformatics. 2024 Nov 29. Li Y, Bollen N, Hong SL, Brusselmans M, Gámbaro F, Klaps J, Suchard MA, Rambaut A, Lemey P, Dellicour S, Baele G. PMID: 39626311.
      View in: PubMed   Mentions:    Fields:    
    3. Modeling the velocity of evolving lineages and predicting dispersal patterns. Proc Natl Acad Sci U S A. 2024 Nov 19; 121(47):e2411582121. Bastide P, Rocu P, Wirtz J, Hassler GW, Chevenet F, Fargette D, Suchard MA, Dellicour S, Lemey P, Guindon S. PMID: 39546571.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    4. COVID-19 pandemic interventions reshaped the global dispersal of seasonal influenza viruses. Science. 2024 Nov 08; 386(6722):eadq3003. Chen Z, Tsui JL, Gutierrez B, Busch Moreno S, du Plessis L, Deng X, Cai J, Bajaj S, Suchard MA, Pybus OG, Lemey P, Kraemer MUG, Yu H. PMID: 39509510.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCellsPHPublic Health
    5. Routes of importation and spatial dynamics of SARS-CoV-2 variants during localized interventions in Chile. PNAS Nexus. 2024 Nov; 3(11):pgae483. Gutierrez B, Tsui JL, Pullano G, Mazzoli M, Gangavarapu K, Inward RPD, Bajaj S, Evans Pena R, Busch-Moreno S, Suchard MA, Pybus OG, Dunner A, Puentes R, Ayala S, Fernandez J, Araos R, Ferres L, Colizza V, Kraemer MUG. PMID: 39525554; PMCID: PMC11547135.
      View in: PubMed   Mentions:
    6. Phylogenetic tree instability after taxon addition: empirical frequency, predictability, and consequences for online inference. Syst Biol. 2024 Oct 25. Collienne L, Barker M, Suchard MA, Matsen Iv FA. PMID: 39453463.
      View in: PubMed   Mentions:    Fields:    
    7. On the importance of assessing topological convergence in Bayesian phylogenetic inference. Virus Evol. 2024; 10(1):veae081. Brusselmans M, Carvalho LM, L Hong S, Gao J, Matsen Iv FA, Rambaut A, Lemey P, Suchard MA, Dudas G, Baele G. PMID: 39534377; PMCID: PMC11556345.
      View in: PubMed   Mentions:
    8. Emergence of the B.1.214.2 SARS-CoV-2 lineage with an Omicron-like spike insertion and a unique upper airway immune signature. BMC Infect Dis. 2024 Oct 10; 24(1):1139. Holtz A, Van Weyenbergh J, Hong SL, Cuypers L, O'Toole Á, Dudas G, Gerdol M, Potter BI, Ntoumi F, Mapanguy CCM, Vanmechelen B, Wawina-Bokalanga T, Van Holm B, Menezes SM, Soubotko K, Van Pottelbergh G, Wollants E, Vermeersch P, Jacob AS, Maes B, Obbels D, Matheeussen V, Martens G, Gras J, Verhasselt B, Laffut W, Vael C, Goegebuer T, van der Kant R, Rousseau F, Schymkowitz J, Serrano L, Delgado J, Wenseleers T, Bours V, André E, Suchard MA, Rambaut A, Dellicour S, Maes P, Durkin K, Baele G. PMID: 39390446; PMCID: PMC11468156.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    9. Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic. Cell. 2024 Sep 19; 187(19):5468-5482.e11. Crits-Christoph A, Levy JI, Pekar JE, Goldstein SA, Singh R, Hensel Z, Gangavarapu K, Rogers MB, Moshiri N, Garry RF, Holmes EC, Koopmans MPG, Lemey P, Peacock TP, Popescu S, Rambaut A, Robertson DL, Suchard MA, Wertheim JO, Rasmussen AL, Andersen KG, Worobey M, Débarre F. PMID: 39303692; PMCID: PMC11427129.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    10. Random-Effects Substitution Models for Phylogenetics via Scalable Gradient Approximations. Syst Biol. 2024 Sep 05; 73(3):562-578. Magee AF, Holbrook AJ, Pekar JE, Caviedes-Solis IW, Matsen Iv FA, Baele G, Wertheim JO, Ji X, Lemey P, Suchard MA. PMID: 38712512; PMCID: PMC11498053.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    11. Farmed fur animals harbour viruses with zoonotic spillover potential. Nature. 2024 Oct; 634(8032):228-233. Zhao J, Wan W, Yu K, Lemey P, Pettersson JH, Bi Y, Lu M, Li X, Chen Z, Zheng M, Yan G, Dai J, Li Y, Haerheng A, He N, Tu C, Suchard MA, Holmes EC, He WT, Su S. PMID: 39232170.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    12. Comparative Effectiveness of Second-Line Antihyperglycemic Agents for Cardiovascular Outcomes: A Multinational, Federated Analysis of LEGEND-T2DM. J Am Coll Cardiol. 2024 Sep 03; 84(10):904-917. Khera R, Aminorroaya A, Dhingra LS, Thangaraj PM, Pedroso Camargos A, Bu F, Ding X, Nishimura A, Anand TV, Arshad F, Blacketer C, Chai Y, Chattopadhyay S, Cook M, Dorr DA, Duarte-Salles T, DuVall SL, Falconer T, French TE, Hanchrow EE, Kaur G, Lau WCY, Li J, Li K, Liu Y, Lu Y, Man KKC, Matheny ME, Mathioudakis N, McLeggon JA, McLemore MF, Minty E, Morales DR, Nagy P, Ostropolets A, Pistillo A, Phan TP, Pratt N, Reyes C, Richter L, Ross JS, Ruan E, Seager SL, Simon KR, Viernes B, Yang J, Yin C, You SC, Zhou JJ, Ryan PB, Schuemie MJ, Krumholz HM, Hripcsak G, Suchard MA. PMID: 39197980.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    13. On the importance of assessing topological convergence in Bayesian phylogenetic inference. ArXiv. 2024 Aug 19. Brusselmans M, Carvalho LM, Hong SL, Gao J, Matsen FA, Rambaut A, Lemey P, Suchard MA, Dudas G, Baele G. PMID: 39253641; PMCID: PMC11383445.
      View in: PubMed   Mentions:
    14. Genomic epidemiology reveals 2022 mpox epidemic in New York City governed by heavy-tailed sexual contact networks. medRxiv. 2024 Aug 01. Pekar JE, Wang Y, Wang JC, Shao Y, Taki F, Forgione LA, Amin H, Clabby T, Johnson K, Torian LV, Braunstein SL, Pathela P, Omoregie E, Hughes S, Suchard MA, Vasylyeva TI, Lemey P, Wertheim JO. PMID: 39132479; PMCID: PMC11312668.
      View in: PubMed   Mentions:
    15. Dispersal history of SARS-CoV-2 in Galicia, Spain. J Med Virol. 2024 Jul; 96(7):e29773. Gallego-García P, Estévez-Gómez N, De Chiara L, Alvariño P, Juiz-González PM, Torres-Beceiro I, Poza M, Vallejo JA, Rumbo-Feal S, Conde-Pérez K, Aja-Macaya P, Ladra S, Moreno-Flores A, Gude-González MJ, Coira A, Aguilera A, Costa-Alcalde JJ, Trastoy R, Barbeito-Castiñeiras G, García-Souto D, Tubio JMC, Trigo-Daporta M, Camacho-Zamora P, Costa JG, González-Domínguez M, Canoura-Fernández L, Glez-Peña D, Pérez-Castro S, Cabrera JJ, Daviña-Núñez C, Godoy-Diz M, Treinta-Álvarez AB, Veiga MI, Sousa JC, Osório NS, Comas I, González-Candelas F, Hong SL, Bollen N, Dellicour S, Baele G, Suchard MA, Lemey P, Agulla A, Bou G, Alonso-García P, Pérez-Del-Molino ML, García-Campello M, Paz-Vidal I, Regueiro B, Posada D. PMID: 38940448.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCellsPHPublic Health
    16. Dispersal history of SARS-CoV-2 variants Alpha, Delta, and Omicron (BA.1) in Spain. medRxiv. 2024 Jul 01. Gallego-García P, Hong SL, Bollen N, Dellicour S, Baele G, Suchard MA, Lemey P, Posada D. PMID: 39006420; PMCID: PMC11245079.
      View in: PubMed   Mentions:
    17. Comparing penalization methods for linear models on large observational health data. J Am Med Inform Assoc. 2024 Jun 20; 31(7):1514-1521. Fridgeirsson EA, Williams R, Rijnbeek P, Suchard MA, Reps JM. PMID: 38767857; PMCID: PMC11187433.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    18. Molecular epidemiology of recurrent zoonotic transmission of mpox virus in West Africa. medRxiv. 2024 Jun 19. Djuicy DD, Omah IF, Parker E, Tomkins-Tinch CH, Otieno JR, Yifomnjou MHM, Essengue LLM, Ayinla AO, Sijuwola AE, Ahmed MI, Ope-Ewe OO, Ogunsanya OA, Olono A, Eromon P, Yonga MGW, Essima GD, Touoyem IP, Mounchili LJM, Eyangoh SI, Esso L, Nguidjol IME, Metomb SF, Chebo C, Agwe SM, Mossi HM, Bilounga CN, Etoundi AGM, Akanbi O, Egwuenu A, Ehiakhamen O, Chukwu C, Suleiman K, Akinpelu A, Ahmad A, Imam KI, Ojedele R, Oripenaye V, Ikeata K, Adelakun S, Olajumoke B, O'Toole Á, Magee A, Zeller M, Gangavarapu K, Varilly P, Park DJ, Mboowa G, Tessema SK, Tebeje YK, Folarin O, Happi A, Lemey P, Suchard MA, Andersen KG, Sabeti P, Rambaut A, Ihekweazu C, Jide I, Adetifa I, Njoum R, Happi CT. PMID: 38947021; PMCID: PMC11213044.
      View in: PubMed   Mentions:
    19. Genomic epidemiology uncovers the timing and origin of the emergence of mpox in humans. medRxiv. 2024 Jun 19. Parker E, Omah IF, Varilly P, Magee A, Ayinla AO, Sijuwola AE, Ahmed MI, Ope-Ewe OO, Ogunsanya OA, Olono A, Eromon P, Tomkins-Tinch CH, Otieno JR, Akanbi O, Egwuenu A, Ehiakhamen O, Chukwu C, Suleiman K, Akinpelu A, Ahmad A, Imam KI, Ojedele R, Oripenaye V, Ikeata K, Adelakun S, Olajumoke B, Djuicy DD, Essengue LLM, Yifomnjou MHM, Zeller M, Gangavarapu K, O'Toole Á, Park DJ, Mboowa G, Tessema SK, Tebeje YK, Folarin O, Happi A, Lemey P, Suchard MA, Andersen KG, Sabeti P, Rambaut A, Njoum R, Ihekweazu C, Jide I, Adetifa I, Happi CT. PMID: 38947052; PMCID: PMC11213064.
      View in: PubMed   Mentions:
    20. Zoonotic infections by avian influenza virus: changing global epidemiology, investigation, and control. Lancet Infect Dis. 2024 Aug; 24(8):e522-e531. Kang M, Wang LF, Sun BW, Wan WB, Ji X, Baele G, Bi YH, Suchard MA, Lai A, Zhang M, Wang L, Zhu YH, Ma L, Li HP, Haerheng A, Qi YR, Wang RL, He N, Su S. PMID: 38878787.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    21. Modeling the velocity of evolving lineages and predicting dispersal patterns. bioRxiv. 2024 Jun 06. Bastide P, Rocu P, Wirtz J, Hassler GW, Chevenet F, Fargette D, Suchard MA, Dellicour S, Lemey P, Guindon S. PMID: 38895258; PMCID: PMC11185746.
      View in: PubMed   Mentions:
    22. spread.gl: visualising pathogen dispersal in a high-performance browser application. medRxiv. 2024 Jun 05. Li Y, Bollen N, Hong SL, Brusselmans M, Gámbaro F, Suchard MA, Rambaut A, Lemey P, Dellicour S, Baele G. PMID: 38883783; PMCID: PMC11177906.
      View in: PubMed   Mentions:
    23. How fast are viruses spreading in the wild? bioRxiv. 2024 May 23. Dellicour S, Bastide P, Rocu P, Fargette D, Hardy OJ, Suchard MA, Guindon S, Lemey P. PMID: 38645268; PMCID: PMC11030353.
      View in: PubMed   Mentions:
    24. Computational Phenomapping of Randomized Clinical Trials to Enable Assessment of their Real-world Representativeness and Personalized Inference. medRxiv. 2024 May 16. Thangaraj PM, Oikonomou EK, Dhingra LS, Aminorroaya A, Jayaram R, Suchard MA, Khera R. PMID: 38798457; PMCID: PMC11118629.
      View in: PubMed   Mentions:
    25. Assessing Covariate Balance with Small Sample Sizes. medRxiv. 2024 Apr 24. Hripcsak G, Zhang L, Li K, Suchard MA, Ryan PB, Schuemie MJ. PMID: 38712282; PMCID: PMC11071580.
      View in: PubMed   Mentions:
    26. The genomic evolutionary dynamics and global circulation patterns of respiratory syncytial virus. Nat Commun. 2024 Apr 10; 15(1):3083. Langedijk AC, Vrancken B, Lebbink RJ, Wilkins D, Kelly EJ, Baraldi E, Mascareñas de Los Santos AH, Danilenko DM, Choi EH, Palomino MA, Chi H, Keller C, Cohen R, Papenburg J, Pernica J, Greenough A, Richmond P, Martinón-Torres F, Heikkinen T, Stein RT, Hosoya M, Nunes MC, Verwey C, Evers A, Kragten-Tabatabaie L, Suchard MA, Kosakovsky Pond SL, Poletto C, Colizza V, Lemey P, Bont LJ, INFORM-RSV Study Group. PMID: 38600104; PMCID: PMC11006891.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    27. Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models. PLoS Comput Biol. 2024 Mar; 20(3):e1011640. Shao Y, Magee AF, Vasylyeva TI, Suchard MA. PMID: 38551979; PMCID: PMC11006205.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCellsPHPublic Health
    28. Similar Risk of Kidney Failure among Patients with Blinding Diseases Who Receive Ranibizumab, Aflibercept, and Bevacizumab: An Observational Health Data Sciences and Informatics Network Study. Ophthalmol Retina. 2024 Aug; 8(8):733-743. Cai CX, Nishimura A, Bowring MG, Westlund E, Tran D, Ng JH, Nagy P, Cook M, McLeggon JA, DuVall SL, Matheny ME, Golozar A, Ostropolets A, Minty E, Desai P, Bu F, Toy B, Hribar M, Falconer T, Zhang L, Lawrence-Archer L, Boland MV, Goetz K, Hall N, Shoaibi A, Reps J, Sena AG, Blacketer C, Swerdel J, Jhaveri KD, Lee E, Gilbert Z, Zeger SL, Crews DC, Suchard MA, Hripcsak G, Ryan PB. PMID: 38519026; PMCID: PMC11298306.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    29. Comparative safety and effectiveness of angiotensin converting enzyme inhibitors and thiazides and thiazide-like diuretics under strict monotherapy. J Clin Hypertens (Greenwich). 2024 Apr; 26(4):425-430. Anand TV, Bu F, Schuemie MJ, Suchard MA, Hripcsak G. PMID: 38501749; PMCID: PMC11007801.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    30. Integrating dynamical modeling and phylogeographic inference to characterize global influenza circulation. medRxiv. 2024 Mar 15. Parino F, Gustani-Buss E, Bedford T, Suchard MA, Trovão NS, Rambaut A, Colizza V, Poletto C, Lemey P. PMID: 38559244; PMCID: PMC10980132.
      View in: PubMed   Mentions:
    31. Authors' Response to Huang et al.'s Comment on "Serially Combining Epidemiological Designs Does Not Improve Overall Signal Detection in Vaccine Safety Surveillance". Drug Saf. 2024 Apr; 47(4):403-404. Bu F, Arshad F, Hripcsak G, Ryan PB, Schuemie MJ, Suchard MA. PMID: 38441750.
      View in: PubMed   Mentions:    Fields:    
    32. Dispersal history of SARS-CoV-2 in Galicia, Spain. medRxiv. 2024 Feb 28. Gallego-García P, Estévez-Gómez N, De Chiara L, Alvariño P, Juiz-González PM, Torres-Beceiro I, Poza M, Vallejo JA, Rumbo-Feal S, Conde-Pérez K, Aja-Macaya P, Ladra S, Moreno-Flores A, Gude-González MJ, Coira A, Aguilera A, Costa-Alcalde JJ, Trastoy R, Barbeito-Castiñeiras G, García-Souto D, Tubio JMC, Trigo-Daporta M, Camacho-Zamora P, Costa JG, González-Domínguez M, Canoura-Fernández L, Glez-Peña D, Pérez-Castro S, Cabrera JJ, Daviña-Núñez C, Godoy-Diz M, Treinta-Álvarez AB, Veiga MI, Sousa JC, Osório NS, Comas I, González-Candelas F, Hong SL, Bollen N, Dellicour S, Baele G, Suchard MA, Lemey P, Agulla A, Bou G, Alonso-García P, Pérez-Del-Molino ML, García-Campello M, Paz-Vidal I, Regueiro B, Posada D. PMID: 38463998; PMCID: PMC10925372.
      View in: PubMed   Mentions:
    33. Comparative Effectiveness of Second-line Antihyperglycemic Agents for Cardiovascular Outcomes: A Large-scale, Multinational, Federated Analysis of the LEGEND-T2DM Study. medRxiv. 2024 Feb 08. Khera R, Aminorroaya A, Dhingra LS, Thangaraj PM, Camargos AP, Bu F, Ding X, Nishimura A, Anand TV, Arshad F, Blacketer C, Chai Y, Chattopadhyay S, Cook M, Dorr DA, Duarte-Salles T, DuVall SL, Falconer T, French TE, Hanchrow EE, Kaur G, Lau WC, Li J, Li K, Liu Y, Lu Y, Man KK, Matheny ME, Mathioudakis N, McLeggon JA, McLemore MF, Minty E, Morales DR, Nagy P, Ostropolets A, Pistillo A, Phan TP, Pratt N, Reyes C, Richter L, Ross J, Ruan E, Seager SL, Simon KR, Viernes B, Yang J, Yin C, You SC, Zhou JJ, Ryan PB, Schuemie MJ, Krumholz HM, Hripcsak G, Suchard MA. PMID: 38370787; PMCID: PMC10871374.
      View in: PubMed   Mentions:
    34. Many-core algorithms for high-dimensional gradients on phylogenetic trees. Bioinformatics. 2024 02 01; 40(2). Gangavarapu K, Ji X, Baele G, Fourment M, Lemey P, Matsen FA, Suchard MA. PMID: 38243701; PMCID: PMC10868298.
      View in: PubMed   Mentions: 2     Fields:    
    35. Health-Analytics Data to Evidence Suite (HADES): Open-Source Software for Observational Research. Stud Health Technol Inform. 2024 Jan 25; 310:966-970. Schuemie M, Reps J, Black A, Defalco F, Evans L, Fridgeirsson E, Gilbert JP, Knoll C, Lavallee M, Rao GA, Rijnbeek P, Sadowski K, Sena A, Swerdel J, Williams RD, Suchard M. PMID: 38269952; PMCID: PMC10868467.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    36. On the surprising effectiveness of a simple matrix exponential derivative approximation, with application to global SARS-CoV-2. Proc Natl Acad Sci U S A. 2024 Jan 16; 121(3):e2318989121. Didier G, Glatt-Holtz NE, Holbrook AJ, Magee AF, Suchard MA. PMID: 38215186; PMCID: PMC10801879.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    37. Genomic surveillance reveals dynamic shifts in the connectivity of COVID-19 epidemics. Cell. 2023 12 21; 186(26):5690-5704.e20. Matteson NL, Hassler GW, Kurzban E, Schwab MA, Perkins SA, Gangavarapu K, Levy JI, Parker E, Pride D, Hakim A, De Hoff P, Cheung W, Castro-Martinez A, Rivera A, Veder A, Rivera A, Wauer C, Holmes J, Wilson J, Ngo SN, Plascencia A, Lawrence ES, Smoot EW, Eisner ER, Tsai R, Chacón M, Baer NA, Seaver P, Salido RA, Aigner S, Ngo TT, Barber T, Ostrander T, Fielding-Miller R, Simmons EH, Zazueta OE, Serafin-Higuera I, Sanchez-Alavez M, Moreno-Camacho JL, García-Gil A, Murphy Schafer AR, McDonald E, Corrigan J, Malone JD, Stous S, Shah S, Moshiri N, Weiss A, Anderson C, Aceves CM, Spencer EG, Hufbauer EC, Lee JJ, King AJ, Ramesh KS, Nguyen KN, Saucedo K, Robles-Sikisaka R, Fisch KM, Gonias SL, Birmingham A, McDonald D, Karthikeyan S, Martin NK, Schooley RT, Negrete AJ, Reyna HJ, Chavez JR, Garcia ML, Cornejo-Bravo JM, Becker D, Isaksson M, Washington NL, Lee W, Garfein RS, Luna-Ruiz Esparza MA, Alcántar-Fernández J, Henson B, Jepsen K, Olivares-Flores B, Barrera-Badillo G, Lopez-Martínez I, Ramírez-González JE, Flores-León R, Kingsmore SF, Sanders A, Pradenas A, White B, Matthews G, Hale M, McLawhon RW, Reed SL, Winbush T, McHardy IH, Fielding RA, Nicholson L, Quigley MM, Harding A, Mendoza A, Bakhtar O, Browne SH, Olivas Flores J, Rincon Rodríguez DG, Gonzalez Ibarra M, Robles Ibarra LC, Arellano Vera BJ, Gonzalez Garcia J, Harvey-Vera A, Knight R, Laurent LC, Yeo GW, Wertheim JO, Ji X, Worobey M, Suchard MA, Andersen KG, Campos-Romero A, Wohl S, Zeller M. PMID: 38101407; PMCID: PMC10795731.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCellsPHPublic Health
    38. Bayesian safety surveillance with adaptive bias correction. Stat Med. 2024 01 30; 43(2):395-418. Bu F, Schuemie MJ, Nishimura A, Smith LH, Kostka K, Falconer T, McLeggon JA, Ryan PB, Hripcsak G, Suchard MA. PMID: 38010062.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    39. An explainable machine learning-based phenomapping strategy for adaptive predictive enrichment in randomized clinical trials. NPJ Digit Med. 2023 Nov 25; 6(1):217. Oikonomou EK, Thangaraj PM, Bhatt DL, Ross JS, Young LH, Krumholz HM, Suchard MA, Khera R. PMID: 38001154; PMCID: PMC10673945.
      View in: PubMed   Mentions: 7  
    40. Evaluating the impact of alternative phenotype definitions on incidence rates across a global data network. JAMIA Open. 2023 Dec; 6(4):ooad096. Makadia R, Shoaibi A, Rao GA, Ostropolets A, Rijnbeek PR, Voss EA, Duarte-Salles T, Ramírez-Anguita JM, Mayer MA, Maljkovic F, Denaxas S, Nyberg F, Papez V, Sena AG, Alshammari TM, Lai LYH, Haynes K, Suchard MA, Hripcsak G, Ryan PB. PMID: 38028730; PMCID: PMC10662662.
      View in: PubMed   Mentions:
    41. Shrinkage-based Random Local Clocks with Scalable Inference. Mol Biol Evol. 2023 Nov 03; 40(11). Fisher AA, Ji X, Nishimura A, Baele G, Lemey P, Suchard MA. PMID: 37950885; PMCID: PMC10665039.
      View in: PubMed   Mentions: 7     Fields:    Translation:Animals
    42. Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models. bioRxiv. 2023 Nov 02. Shao Y, Magee AF, Vasylyeva TI, Suchard MA. PMID: 37961423; PMCID: PMC10634968.
      View in: PubMed   Mentions:
    43. APOBEC3 deaminase editing in mpox virus as evidence for sustained human transmission since at least 2016. Science. 2023 11 03; 382(6670):595-600. O'Toole Á, Neher RA, Ndodo N, Borges V, Gannon B, Gomes JP, Groves N, King DJ, Maloney D, Lemey P, Lewandowski K, Loman N, Myers R, Omah IF, Suchard MA, Worobey M, Chand M, Ihekweazu C, Ulaeto D, Adetifa I, Rambaut A. PMID: 37917680; PMCID: PMC10880385.
      View in: PubMed   Mentions: 34     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    44. Scalable Bayesian Divergence Time Estimation With Ratio Transformations. Syst Biol. 2023 11 01; 72(5):1136-1153. Ji X, Fisher AA, Su S, Thorne JL, Potter B, Lemey P, Baele G, Suchard MA. PMID: 37458991; PMCID: PMC10636426.
      View in: PubMed   Mentions: 4     Fields:    
    45. An explainable machine learning-based phenomapping strategy for adaptive predictive enrichment in randomized controlled trials. medRxiv. 2023 Nov 01. Oikonomou EK, Thangaraj PM, Bhatt DL, Ross JS, Young LH, Krumholz HM, Suchard MA, Khera R. PMID: 37961715; PMCID: PMC10635225.
      View in: PubMed   Mentions:
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    119. Characteristics and Outcomes of Over 300,000 Patients with COVID-19 and History of Cancer in the United States and Spain. Cancer Epidemiol Biomarkers Prev. 2021 10; 30(10):1884-1894. Roel E, Pistillo A, Recalde M, Sena AG, Fernández-Bertolín S, Aragón M, Puente D, Ahmed WU, Alghoul H, Alser O, Alshammari TM, Areia C, Blacketer C, Carter W, Casajust P, Culhane AC, Dawoud D, DeFalco F, DuVall SL, Falconer T, Golozar A, Gong M, Hester L, Hripcsak G, Tan EH, Jeon H, Jonnagaddala J, Lai LYH, Lynch KE, Matheny ME, Morales DR, Natarajan K, Nyberg F, Ostropolets A, Posada JD, Prats-Uribe A, Reich CG, Rivera DR, Schilling LM, Soerjomataram I, Shah K, Shah NH, Shen Y, Spotniz M, Subbian V, Suchard MA, Trama A, Zhang L, Zhang Y, Ryan PB, Prieto-Alhambra D, Kostka K, Duarte-Salles T. PMID: 34272262; PMCID: PMC8974356.
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    123. Untangling introductions and persistence in COVID-19 resurgence in Europe. Nature. 2021 07; 595(7869):713-717. Lemey P, Ruktanonchai N, Hong SL, Colizza V, Poletto C, Van den Broeck F, Gill MS, Ji X, Levasseur A, Oude Munnink BB, Koopmans M, Sadilek A, Lai S, Tatem AJ, Baele G, Suchard MA, Dellicour S. PMID: 34192736; PMCID: PMC8324533.
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    125. A phylogenetic approach for weighting genetic sequences. BMC Bioinformatics. 2021 May 28; 22(1):285. De Maio N, Alekseyenko AV, Coleman-Smith WJ, Pardi F, Suchard MA, Tamuri AU, Truszkowski J, Goldman N. PMID: 34049487; PMCID: PMC8164272.
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    127. Use of repurposed and adjuvant drugs in hospital patients with covid-19: multinational network cohort study. BMJ. 2021 05 11; 373:n1038. Prats-Uribe A, Sena AG, Lai LYH, Ahmed WU, Alghoul H, Alser O, Alshammari TM, Areia C, Carter W, Casajust P, Dawoud D, Golozar A, Jonnagaddala J, Mehta PP, Gong M, Morales DR, Nyberg F, Posada JD, Recalde M, Roel E, Shah K, Shah NH, Schilling LM, Subbian V, Vizcaya D, Zhang L, Zhang Y, Zhu H, Liu L, Cho J, Lynch KE, Matheny ME, You SC, Rijnbeek PR, Hripcsak G, Lane JC, Burn E, Reich C, Suchard MA, Duarte-Salles T, Kostka K, Ryan PB, Prieto-Alhambra D. PMID: 33975825; PMCID: PMC8111167.
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    128. Male-Female Disparities in Years of Potential Life Lost Attributable to COVID-19 in the United States: A State-by-State Analysis. medRxiv. 2021 May 05. Xu JJ, Chen JT, Belin TR, Brookmeyer RS, Suchard MA, Ramirez CM. PMID: 33972951; PMCID: PMC8109188.
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    134. Bayesian Phylogeographic Analysis Incorporating Predictors and Individual Travel Histories in BEAST. Curr Protoc. 2021 Apr; 1(4):e98. Hong SL, Lemey P, Suchard MA, Baele G. PMID: 33836121; PMCID: PMC8672455.
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    136. Comprehensive Comparative Effectiveness and Safety of First-Line β-Blocker Monotherapy in Hypertensive Patients: A Large-Scale Multicenter Observational Study. Hypertension. 2021 05 05; 77(5):1528-1538. Chan You S, Krumholz HM, Suchard MA, Schuemie MJ, Hripcsak G, Chen R, Shea S, Duke J, Pratt N, Reich CG, Madigan D, Ryan PB, Woong Park R, Park S. PMID: 33775125; PMCID: PMC8035236.
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    137. Pandemic velocity: Forecasting COVID-19 in the US with a machine learning & Bayesian time series compartmental model. PLoS Comput Biol. 2021 03; 17(3):e1008837. Watson GL, Xiong D, Zhang L, Zoller JA, Shamshoian J, Sundin P, Bufford T, Rimoin AW, Suchard MA, Ramirez CM. PMID: 33780443; PMCID: PMC8031749.
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    138. Alpha-1 blockers and susceptibility to COVID-19 in benign prostate hyperplasia patients : an international cohort study. medRxiv. 2021 Mar 24. Nishimura A, Xie J, Kostka K, Duarte-Salles T, Bertolín SF, Aragón M, Blacketer C, Shoaibi A, DuVall SL, Lynch K, Matheny ME, Falconer T, Morales DR, Conover MM, You SC, Pratt N, Weaver J, Sena AG, Schuemie MJ, Reps J, Reich C, Rijnbeek PR, Ryan PB, Hripcsak G, Prieto-Alhambra D, Suchard MA. PMID: 33791740; PMCID: PMC8010772.
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    139. Racial and Ethnic Disparities in Years of Potential Life Lost Attributable to COVID-19 in the United States: An Analysis of 45 States and the District of Columbia. Int J Environ Res Public Health. 2021 03 12; 18(6). Xu JJ, Chen JT, Belin TR, Brookmeyer RS, Suchard MA, Ramirez CM. PMID: 33809240; PMCID: PMC8000338.
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    140. Genomics and epidemiology of a novel SARS-CoV-2 lineage in Manaus, Brazil. medRxiv. 2021 Mar 03. Faria NR, Mellan TA, Whittaker C, Claro IM, Candido DDS, Mishra S, Crispim MAE, Sales FC, Hawryluk I, McCrone JT, Hulswit RJG, Franco LAM, Ramundo MS, de Jesus JG, Andrade PS, Coletti TM, Ferreira GM, Silva CAM, Manuli ER, Pereira RHM, Peixoto PS, Kraemer MU, Gaburo N, Camilo CDC, Hoeltgebaum H, Souza WM, Rocha EC, de Souza LM, de Pinho MC, Araujo LJT, Malta FSV, de Lima AB, Silva JDP, Zauli DAG, de S Ferreira AC, Schnekenberg RP, Laydon DJ, Walker PGT, Schlüter HM, Dos Santos ALP, Vidal MS, Del Caro VS, Filho RMF, Dos Santos HM, Aguiar RS, Modena JLP, Nelson B, Hay JA, Monod M, Miscouridou X, Coupland H, Sonabend R, Vollmer M, Gandy A, Suchard MA, Bowden TA, Pond SLK, Wu CH, Ratmann O, Ferguson NM, Dye C, Loman NJ, Lemey P, Rambaut A, Fraiji NA, Carvalho MDPSS, Pybus OG, Flaxman S, Bhatt S, Sabino EC. PMID: 33688664; PMCID: PMC7941639.
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    145. Emergence of an early SARS-CoV-2 epidemic in the United States. medRxiv. 2021 Feb 08. Zeller M, Gangavarapu K, Anderson C, Smither AR, Vanchiere JA, Rose R, Snyder DJ, Dudas G, Watts A, Matteson NL, Robles-Sikisaka R, Marshall M, Feehan AK, Sabino-Santos G, Bell-Kareem AR, Hughes LD, Alkuzweny M, Snarski P, Garcia-Diaz J, Scott RS, Melnik LI, Klitting R, McGraw M, Belda-Ferre P, DeHoff P, Sathe S, Marotz C, Grubaugh N, Nolan DJ, Drouin AC, Genemaras KJ, Chao K, Topol S, Spencer E, Nicholson L, Aigner S, Yeo GW, Farnaes L, Hobbs CA, Laurent LC, Knight R, Hodcroft EB, Khan K, Fusco DN, Cooper VS, Lemey P, Gardner L, Lamers SL, Kamil JP, Garry RF, Suchard MA, Andersen KG. PMID: 33564781; PMCID: PMC7872376.
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    150. Renin-angiotensin system blockers and susceptibility to COVID-19: an international, open science, cohort analysis. Lancet Digit Health. 2021 02; 3(2):e98-e114. Morales DR, Conover MM, You SC, Pratt N, Kostka K, Duarte-Salles T, Fernández-Bertolín S, Aragón M, DuVall SL, Lynch K, Falconer T, van Bochove K, Sung C, Matheny ME, Lambert CG, Nyberg F, Alshammari TM, Williams AE, Park RW, Weaver J, Sena AG, Schuemie MJ, Rijnbeek PR, Williams RD, Lane JCE, Prats-Uribe A, Zhang L, Areia C, Krumholz HM, Prieto-Alhambra D, Ryan PB, Hripcsak G, Suchard MA. PMID: 33342753; PMCID: PMC7834915.
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    155. Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework. Nat Commun. 2020 11 06; 11(1):5620. Dellicour S, Lequime S, Vrancken B, Gill MS, Bastide P, Gangavarapu K, Matteson NL, Tan Y, du Plessis L, Fisher AA, Nelson MI, Gilbert M, Suchard MA, Andersen KG, Grubaugh ND, Pybus OG, Lemey P. PMID: 33159066; PMCID: PMC7648063.
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    156. Baseline characteristics, management, and outcomes of 55,270 children and adolescents diagnosed with COVID-19 and 1,952,693 with influenza in France, Germany, Spain, South Korea and the United States: an international network cohort study. medRxiv. 2020 Oct 30. Duarte-Salles T, Vizcaya D, Pistillo A, Casajust P, Sena AG, Lai LYH, Prats-Uribe A, Ahmed WU, Alshammari TM, Alghoul H, Alser O, Burn E, You SC, Areia C, Blacketer C, DuVall S, Falconer T, Fernandez-Bertolin S, Fortin S, Golozar A, Gong M, Tan EH, Huser V, Iveli P, Morales DR, Nyberg F, Posada JD, Recalde M, Roel E, Schilling LM, Shah NH, Shah K, Suchard MA, Zhang L, Zhang Y, Williams AE, Reich CG, Hripcsak G, Rijnbeek P, Ryan P, Kostka K, Prieto-Alhambra D. PMID: 33140074; PMCID: PMC7605587.
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    159. Estimating effective population size changes from preferentially sampled genetic sequences. PLoS Comput Biol. 2020 10; 16(10):e1007774. Karcher MD, Carvalho LM, Suchard MA, Dudas G, Minin VN. PMID: 33044955; PMCID: PMC7580988.
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    160. Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2. Nat Commun. 2020 10 09; 11(1):5110. Lemey P, Hong SL, Hill V, Baele G, Poletto C, Colizza V, O'Toole Á, McCrone JT, Andersen KG, Worobey M, Nelson MI, Rambaut A, Suchard MA. PMID: 33037213; PMCID: PMC7547076.
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    162. Gradients Do Grow on Trees: A Linear-Time O(N)-Dimensional Gradient for Statistical Phylogenetics. Mol Biol Evol. 2020 10 01; 37(10):3047-3060. Ji X, Zhang Z, Holbrook A, Nishimura A, Baele G, Rambaut A, Lemey P, Suchard MA. PMID: 32458974; PMCID: PMC7530611.
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    165. Genomic Epidemiology, Evolution, and Transmission Dynamics of Porcine Deltacoronavirus. Mol Biol Evol. 2020 09 01; 37(9):2641-2654. He WT, Ji X, He W, Dellicour S, Wang S, Li G, Zhang L, Gilbert M, Zhu H, Xing G, Veit M, Huang Z, Han GZ, Huang Y, Suchard MA, Baele G, Lemey P, Su S. PMID: 32407507; PMCID: PMC7454817.
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    166. Risk of hydroxychloroquine alone and in combination with azithromycin in the treatment of rheumatoid arthritis: a multinational, retrospective study. Lancet Rheumatol. 2020 Nov; 2(11):e698-e711. Lane JCE, Weaver J, Kostka K, Duarte-Salles T, Abrahao MTF, Alghoul H, Alser O, Alshammari TM, Biedermann P, Banda JM, Burn E, Casajust P, Conover MM, Culhane AC, Davydov A, DuVall SL, Dymshyts D, Fernandez-Bertolin S, Fišter K, Hardin J, Hester L, Hripcsak G, Kaas-Hansen BS, Kent S, Khosla S, Kolovos S, Lambert CG, van der Lei J, Lynch KE, Makadia R, Margulis AV, Matheny ME, Mehta P, Morales DR, Morgan-Stewart H, Mosseveld M, Newby D, Nyberg F, Ostropolets A, Park RW, Prats-Uribe A, Rao GA, Reich C, Reps J, Rijnbeek P, Sathappan SMK, Schuemie M, Seager S, Sena AG, Shoaibi A, Spotnitz M, Suchard MA, Torre CO, Vizcaya D, Wen H, de Wilde M, Xie J, You SC, Zhang L, Zhuk O, Ryan P, Prieto-Alhambra D, OHDSI-COVID-19 consortium. PMID: 32864627; PMCID: PMC7442425.
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    169. Comparative safety and effectiveness of alendronate versus raloxifene in women with osteoporosis. Sci Rep. 2020 07 06; 10(1):11115. Kim Y, Tian Y, Yang J, Huser V, Jin P, Lambert CG, Park H, You SC, Park RW, Rijnbeek PR, Van Zandt M, Reich C, Vashisht R, Wu Y, Duke J, Hripcsak G, Madigan D, Shah NH, Ryan PB, Schuemie MJ, Suchard MA. PMID: 32632237; PMCID: PMC7338498.
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    304. Impact of CCR5delta32 host genetic background and disease progression on HIV-1 intrahost evolutionary processes: efficient hypothesis testing through hierarchical phylogenetic models. Mol Biol Evol. 2011 May; 28(5):1605-16. Edo-Matas D, Lemey P, Tom JA, Serna-Bolea C, van den Blink AE, van 't Wout AB, Schuitemaker H, Suchard MA. PMID: 21135151; PMCID: PMC3080134.
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    305. Testing spatiotemporal hypothesis of bacterial evolution using methicillin-resistant Staphylococcus aureus ST239 genome-wide data within a bayesian framework. Mol Biol Evol. 2011 May; 28(5):1593-603. Gray RR, Tatem AJ, Johnson JA, Alekseyenko AV, Pybus OG, Suchard MA, Salemi M. PMID: 21112962; PMCID: PMC3115679.
      View in: PubMed   Mentions: 39     Fields:    Translation:HumansCells
    306. Phylodynamics and human-mediated dispersal of a zoonotic virus. PLoS Pathog. 2010 Oct 28; 6(10):e1001166. Talbi C, Lemey P, Suchard MA, Abdelatif E, Elharrak M, Nourlil J, Jalal N, Faouzi A, Echevarría JE, Vazquez Morón S, Rambaut A, Campiz N, Tatem AJ, Holmes EC, Bourhy H. PMID: 21060816; PMCID: PMC2965766.
      View in: PubMed   Mentions: 81     Fields:    Translation:HumansAnimalsCells
    307. A Bayesian phylogenetic method to estimate unknown sequence ages. Mol Biol Evol. 2011 Feb; 28(2):879-87. Shapiro B, Ho SY, Drummond AJ, Suchard MA, Pybus OG, Rambaut A. PMID: 20889726; PMCID: PMC3108556.
      View in: PubMed   Mentions: 68     Fields:    Translation:AnimalsCells
    308. Three roads diverged? Routes to phylogeographic inference. Trends Ecol Evol. 2010 Nov; 25(11):626-32. Bloomquist EW, Lemey P, Suchard MA. PMID: 20863591; PMCID: PMC2956787.
      View in: PubMed   Mentions: 40     Fields:    Translation:Animals
    309. Bayesian random local clocks, or one rate to rule them all. BMC Biol. 2010 Aug 31; 8:114. Drummond AJ, Suchard MA. PMID: 20807414; PMCID: PMC2949620.
      View in: PubMed   Mentions: 167     Fields:    Translation:Animals
    310. Graphics Processing Units and High-Dimensional Optimization. Stat Sci. 2010 Aug 01; 25(3):311-324. Zhou H, Lange K, Suchard MA. PMID: 21847315; PMCID: PMC3155776.
      View in: PubMed   Mentions: 18  
    311. Yellow fever virus maintenance in Trinidad and its dispersal throughout the Americas. J Virol. 2010 Oct; 84(19):9967-77. Auguste AJ, Lemey P, Pybus OG, Suchard MA, Salas RA, Adesiyun AA, Barrett AD, Tesh RB, Weaver SC, Carrington CV. PMID: 20631128; PMCID: PMC2937779.
      View in: PubMed   Mentions: 38     Fields:    Translation:HumansAnimalsCells
    312. Understanding GPU Programming for Statistical Computation: Studies in Massively Parallel Massive Mixtures. J Comput Graph Stat. 2010 Jun 01; 19(2):419-438. Suchard MA, Wang Q, Chan C, Frelinger J, Cron A, West M. PMID: 20877443; PMCID: PMC2945379.
      View in: PubMed   Mentions: 30  
    313. Evolution and recombination of genes encoding HIV-1 drug resistance and tropism during antiretroviral therapy. Virology. 2010 Aug 15; 404(1):5-20. Shi B, Kitchen C, Weiser B, Mayers D, Foley B, Kemal K, Anastos K, Suchard M, Parker M, Brunner C, Burger H. PMID: 20451945; PMCID: PMC3186207.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
    314. Using time-structured data to estimate evolutionary rates of double-stranded DNA viruses. Mol Biol Evol. 2010 Sep; 27(9):2038-51. Firth C, Kitchen A, Shapiro B, Suchard MA, Holmes EC, Rambaut A. PMID: 20363828; PMCID: PMC3107591.
      View in: PubMed   Mentions: 154     Fields:    Translation:Cells
    315. Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus) population dynamics. Proc Natl Acad Sci U S A. 2010 Mar 23; 107(12):5675-80. Campos PF, Willerslev E, Sher A, Orlando L, Axelsson E, Tikhonov A, Aaris-Sørensen K, Greenwood AD, Kahlke RD, Kosintsev P, Krakhmalnaya T, Kuznetsova T, Lemey P, MacPhee R, Norris CA, Shepherd K, Suchard MA, Zazula GD, Shapiro B, Gilbert MT. PMID: 20212118; PMCID: PMC2851807.
      View in: PubMed   Mentions: 54     Fields:    Translation:HumansAnimals
    316. Phylogeography takes a relaxed random walk in continuous space and time. Mol Biol Evol. 2010 Aug; 27(8):1877-85. Lemey P, Rambaut A, Welch JJ, Suchard MA. PMID: 20203288; PMCID: PMC2915639.
      View in: PubMed   Mentions: 296     Fields:    Translation:AnimalsPHPublic Health
    317. Reuse, Recycle, Reweigh: Combating Influenza through Efficient Sequential Bayesian Computation for Massive Data. Ann Appl Stat. 2010; 4(4):1722-1748. Tom JA, Sinsheimer JS, Suchard MA. PMID: 26681992; PMCID: PMC4679157.
      View in: PubMed   Mentions: 8  
    318. Unifying vertical and nonvertical evolution: a stochastic ARG-based framework. Syst Biol. 2010 Jan; 59(1):27-41. Bloomquist EW, Suchard MA. PMID: 20525618; PMCID: PMC2909786.
      View in: PubMed   Mentions: 27     Fields:    Translation:AnimalsCells
    319. Bayesian phylogeography finds its roots. PLoS Comput Biol. 2009 Sep; 5(9):e1000520. Lemey P, Rambaut A, Drummond AJ, Suchard MA. PMID: 19779555; PMCID: PMC2740835.
      View in: PubMed   Mentions: 889     Fields:    Translation:HumansAnimalsCells
    320. Reconstructing the initial global spread of a human influenza pandemic: A Bayesian spatial-temporal model for the global spread of H1N1pdm. PLoS Curr. 2009 Sep 02; 1:RRN1031. Lemey P, Suchard M, Rambaut A. PMID: 20029613; PMCID: PMC2762761.
      View in: PubMed   Mentions: 59  
    321. Improving phylogenetic analyses by incorporating additional information from genetic sequence databases. Bioinformatics. 2009 Oct 01; 25(19):2530-6. Liang LJ, Weiss RE, Redelings B, Suchard MA. PMID: 19661240; PMCID: PMC2800350.
      View in: PubMed   Mentions: 3     Fields:    
    322. Many-core algorithms for statistical phylogenetics. Bioinformatics. 2009 Jun 01; 25(11):1370-6. Suchard MA, Rambaut A. PMID: 19369496; PMCID: PMC2682525.
      View in: PubMed   Mentions: 176     Fields:    
    323. Two-way Bayesian hierarchical phylogenetic models: An application to the co-evolution of gp120 and gp41 during and after enfuvirtide treatment. Comput Stat Data Anal. 2009 Jan 15; 53(3):766-775. Kitchen CM, Kroll J, Kuritzkes DR, Bloomquist E, Deeks SG, Suchard MA. PMID: 20442796; PMCID: PMC2862497.
      View in: PubMed   Mentions: 3  
    324. Learning to count: robust estimates for labeled distances between molecular sequences. Mol Biol Evol. 2009 Apr; 26(4):801-14. O'Brien JD, Minin VN, Suchard MA. PMID: 19131426; PMCID: PMC2734148.
      View in: PubMed   Mentions: 64     Fields:    Translation:Cells
    325. Fast, accurate and simulation-free stochastic mapping. Philos Trans R Soc Lond B Biol Sci. 2008 Dec 27; 363(1512):3985-95. Minin VN, Suchard MA. PMID: 18852111; PMCID: PMC2607419.
      View in: PubMed   Mentions: 91     Fields:    
    326. Genetic diversity of the Leptospiral immunoglobulin-like (Lig) genes in pathogenic Leptospira spp. Infect Genet Evol. 2009 Mar; 9(2):196-205. McBride AJ, Cerqueira GM, Suchard MA, Moreira AN, Zuerner RL, Reis MG, Haake DA, Ko AI, Dellagostin OA. PMID: 19028604; PMCID: PMC2812920.
      View in: PubMed   Mentions: 36     Fields:    Translation:AnimalsCells
    327. Fully Bayesian tests of neutrality using genealogical summary statistics. BMC Genet. 2008 Oct 31; 9:68. Drummond AJ, Suchard MA. PMID: 18976476; PMCID: PMC2645432.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    328. Wagner and Dollo: a stochastic duet by composing two parsimonious solos. Syst Biol. 2008 Oct; 57(5):772-84. Alekseyenko AV, Lee CJ, Suchard MA. PMID: 18853363; PMCID: PMC4677801.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansAnimalsCells
    329. StepBrothers: inferring partially shared ancestries among recombinant viral sequences. Biostatistics. 2009 Jan; 10(1):106-20. Bloomquist EW, Dorman KS, Suchard MA. PMID: 18562348; PMCID: PMC2639346.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    330. Dating the time of viral subtype divergence. BMC Evol Biol. 2008 Jun 09; 8:172. O'Brien JD, She ZS, Suchard MA. PMID: 18541033; PMCID: PMC2443812.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    331. Pomegranate juice and extracts provide similar levels of plasma and urinary ellagitannin metabolites in human subjects. J Med Food. 2008 Jun; 11(2):390-4. Seeram NP, Zhang Y, McKeever R, Henning SM, Lee RP, Suchard MA, Li Z, Chen S, Thames G, Zerlin A, Nguyen M, Wang D, Dreher M, Heber D. PMID: 18598186; PMCID: PMC3196216.
      View in: PubMed   Mentions: 46     Fields:    Translation:HumansAnimals
    332. Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics. Mol Biol Evol. 2008 Jul; 25(7):1459-71. Minin VN, Bloomquist EW, Suchard MA. PMID: 18408232; PMCID: PMC3302198.
      View in: PubMed   Mentions: 355     Fields:    Translation:HumansCells
    333. Alignment uncertainty and genomic analysis. Science. 2008 Jan 25; 319(5862):473-6. Wong KM, Suchard MA, Huelsenbeck JP. PMID: 18218900.
      View in: PubMed   Mentions: 157     Fields:    Translation:AnimalsCells
    334. Representational oligonucleotide microarray analysis (ROMA) and comparison of binning and change-point methods of analysis: application to detection of del22q11.2 (DiGeorge) syndrome. Hum Mutat. 2008 Jan; 29(1):176-81. Stanczak CM, Chen Z, Nelson SF, Suchard M, McCabe ER, McGhee S. PMID: 17694540.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    335. A nonparametric method for accommodating and testing across-site rate variation. Syst Biol. 2007 Dec; 56(6):975-87. Huelsenbeck JP, Suchard MA. PMID: 18075934.
      View in: PubMed   Mentions: 20     Fields:    
    336. Leptospira interrogans endostatin-like outer membrane proteins bind host fibronectin, laminin and regulators of complement. PLoS One. 2007 Nov 14; 2(11):e1188. Stevenson B, Choy HA, Pinne M, Rotondi ML, Miller MC, Demoll E, Kraiczy P, Cooley AE, Creamer TP, Suchard MA, Brissette CA, Verma A, Haake DA. PMID: 18000555; PMCID: PMC2063517.
      View in: PubMed   Mentions: 97     Fields:    Translation:Cells
    337. Validation of candidate serum ovarian cancer biomarkers for early detection. Biomark Insights. 2007 Oct 16; 2:369-75. Su F, Lang J, Kumar A, Ng C, Hsieh B, Suchard MA, Reddy ST, Farias-Eisner R. PMID: 19662218; PMCID: PMC2717832.
      View in: PubMed   Mentions: 24  
    338. Counting labeled transitions in continuous-time Markov models of evolution. J Math Biol. 2008 Mar; 56(3):391-412. Minin VN, Suchard MA. PMID: 17874105.
      View in: PubMed   Mentions: 179     Fields:    
    339. Pomegranate ellagitannin-derived metabolites inhibit prostate cancer growth and localize to the mouse prostate gland. J Agric Food Chem. 2007 Sep 19; 55(19):7732-7. Seeram NP, Aronson WJ, Zhang Y, Henning SM, Moro A, Lee RP, Sartippour M, Harris DM, Rettig M, Suchard MA, Pantuck AJ, Belldegrun A, Heber D. PMID: 17722872.
      View in: PubMed   Mentions: 84     Fields:    Translation:HumansAnimals
    340. Development of an advanced electrochemical DNA biosensor for bacterial pathogen detection. J Mol Diagn. 2007 Apr; 9(2):158-68. Liao JC, Mastali M, Li Y, Gau V, Suchard MA, Babbitt J, Gornbein J, Landaw EM, McCabe ER, Churchill BM, Haake DA. PMID: 17384207; PMCID: PMC1867445.
      View in: PubMed   Mentions: 29     Fields:    Translation:Cells
    341. Incorporating indel information into phylogeny estimation for rapidly emerging pathogens. BMC Evol Biol. 2007 Mar 14; 7:40. Redelings BD, Suchard MA. PMID: 17359539; PMCID: PMC1853084.
      View in: PubMed   Mentions: 39     Fields:    Translation:Cells
    342. Phylogenetic mapping of recombination hotspots in human immunodeficiency virus via spatially smoothed change-point processes. Genetics. 2007 Apr; 175(4):1773-85. Minin VN, Dorman KS, Fang F, Suchard MA. PMID: 17194781; PMCID: PMC1855141.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansAnimalsCells
    343. cBrother: relaxing parental tree assumptions for Bayesian recombination detection. Bioinformatics. 2007 Feb 15; 23(4):507-8. Fang F, Ding J, Minin VN, Suchard MA, Dorman KS. PMID: 17145740.
      View in: PubMed   Mentions: 8     Fields:    Translation:Cells
    344. Continued evolution in gp41 after interruption of enfuvirtide in subjects with advanced HIV type 1 disease. AIDS Res Hum Retroviruses. 2006 Dec; 22(12):1260-6. Kitchen CM, Lu J, Suchard MA, Hoh R, Martin JN, Kuritzkes DR, Deeks SG. PMID: 17209769.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    345. Time squared: repeated measures on phylogenies. Mol Biol Evol. 2007 Feb; 24(2):352-62. Guo H, Weiss RE, Gu X, Suchard MA. PMID: 17079699.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimals
    346. Pomegranate juice ellagitannin metabolites are present in human plasma and some persist in urine for up to 48 hours. J Nutr. 2006 Oct; 136(10):2481-5. Seeram NP, Henning SM, Zhang Y, Suchard M, Li Z, Heber D. PMID: 16988113.
      View in: PubMed   Mentions: 128     Fields:    Translation:HumansAnimals
    347. Modeling of the temporal patterns of fluoxetine prescriptions and suicide rates in the United States. PLoS Med. 2006 Jun; 3(6):e190. Milane MS, Suchard MA, Wong ML, Licinio J. PMID: 16768544; PMCID: PMC1475655.
      View in: PubMed   Mentions: 23     Fields:    Translation:Humans
    348. BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny. Bioinformatics. 2006 Aug 15; 22(16):2047-8. Suchard MA, Redelings BD. PMID: 16679334.
      View in: PubMed   Mentions: 98     Fields:    Translation:Cells
    349. Use of electrochemical DNA biosensors for rapid molecular identification of uropathogens in clinical urine specimens. J Clin Microbiol. 2006 Feb; 44(2):561-70. Liao JC, Mastali M, Gau V, Suchard MA, Møller AK, Bruckner DA, Babbitt JT, Li Y, Gornbein J, Landaw EM, McCabe ER, Churchill BM, Haake DA. PMID: 16455913; PMCID: PMC1392664.
      View in: PubMed   Mentions: 72     Fields:    Translation:HumansCells
    350. Models for estimating bayes factors with applications to phylogeny and tests of monophyly. Biometrics. 2005 Sep; 61(3):665-73. Suchard MA, Weiss RE, Sinsheimer JS. PMID: 16135017.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansCells
    351. Joint Bayesian estimation of alignment and phylogeny. Syst Biol. 2005 Jun; 54(3):401-18. Redelings BD, Suchard MA. PMID: 16012107.
      View in: PubMed   Mentions: 97     Fields:    Translation:Cells
    352. Dual multiple change-point model leads to more accurate recombination detection. Bioinformatics. 2005 Jul 01; 21(13):3034-42. Minin VN, Dorman KS, Fang F, Suchard MA. PMID: 15914546.
      View in: PubMed   Mentions: 64     Fields:    
    353. Stochastic models for horizontal gene transfer: taking a random walk through tree space. Genetics. 2005 May; 170(1):419-31. Suchard MA. PMID: 15781714; PMCID: PMC1449731.
      View in: PubMed   Mentions: 16     Fields:    Translation:Cells
    354. Bayesian estimation of recent migration rates after a spatial expansion. Genetics. 2005 May; 170(1):409-17. Hamilton G, Currat M, Ray N, Heckel G, Beaumont M, Excoffier L. PMID: 15716508; PMCID: PMC1449703.
      View in: PubMed   Mentions: 29     Fields:    Translation:AnimalsCells
    355. Early nodal response as a predictor for necessity of functional neck dissection after chemoradiation. Cancer J. 2004 Nov-Dec; 10(6):339-42. Vongtama R, Lee M, Kim B, Sercarz J, Lin K, Suchard MA, Lee SP, Juillard G. PMID: 15701264.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    356. Evolution of human immunodeficiency virus type 1 coreceptor usage during antiretroviral Therapy: a Bayesian approach. J Virol. 2004 Oct; 78(20):11296-302. Kitchen CM, Philpott S, Burger H, Weiser B, Anastos K, Suchard MA. PMID: 15452249; PMCID: PMC521818.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCellsCTClinical Trials
    357. Physician knowledge of herbal toxicities and adverse herb-drug interactions. Eur J Emerg Med. 2004 Aug; 11(4):193-7. Suchard JR, Suchard MA, Steinfeldt JL. PMID: 15249804.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    358. Alterations in the dynamics of circulating ghrelin, adiponectin, and leptin in human obesity. Proc Natl Acad Sci U S A. 2004 Jul 13; 101(28):10434-9. Yildiz BO, Suchard MA, Wong ML, McCann SM, Licinio J. PMID: 15231997; PMCID: PMC478601.
      View in: PubMed   Mentions: 104     Fields:    Translation:HumansCells
    359. Molecular evolution and mosaicism of leptospiral outer membrane proteins involves horizontal DNA transfer. J Bacteriol. 2004 May; 186(9):2818-28. Haake DA, Suchard MA, Kelley MM, Dundoo M, Alt DP, Zuerner RL. PMID: 15090524; PMCID: PMC387810.
      View in: PubMed   Mentions: 67     Fields:    Translation:Cells
    360. Hierarchical phylogenetic models for analyzing multipartite sequence data. Syst Biol. 2003 Oct; 52(5):649-64. Suchard MA, Kitchen CM, Sinsheimer JS, Weiss RE. PMID: 14530132.
      View in: PubMed   Mentions: 56     Fields:    Translation:HumansAnimalsCells
    361. Interplay of chemotaxis and chemokinesis mechanisms in bacterial dynamics. Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Aug; 68(2 Pt 1):021925. D'Orsogna MR, Suchard MA, Chou T. PMID: 14525024.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    362. Testing a molecular clock without an outgroup: derivations of induced priors on branch-length restrictions in a Bayesian framework. Syst Biol. 2003 Feb; 52(1):48-54. Suchard MA, Weiss RE, Sinsheimer JS. PMID: 12554439.
      View in: PubMed   Mentions: 8     Fields:    Translation:Animals
    363. Are you my mother? Bayesian phylogenetic inference of recombination among putative parental strains. Appl Bioinformatics. 2003; 2(3):131-44. Sinsheimer JS, Suchard MA, Dorman KS, Fang F, Weiss RE. PMID: 15130798.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    364. Oh brother, where art thou? A Bayes factor test for recombination with uncertain heritage. Syst Biol. 2002 Oct; 51(5):715-28. Suchard MA, Weiss RE, Dorman KS, Sinsheimer JS. PMID: 12396586.
      View in: PubMed   Mentions: 15     Fields:    Translation:Cells
    365. Regulation of circulating soluble leptin receptor levels by gender, adiposity, sex steroids, and leptin: observational and interventional studies in humans. Diabetes. 2002 Jul; 51(7):2105-12. Chan JL, Blüher S, Yiannakouris N, Suchard MA, Kratzsch J, Mantzoros CS. PMID: 12086939.
      View in: PubMed   Mentions: 77     Fields:    Translation:HumansCells
    366. General practitioners' views on genetic screening for common diseases. Br J Gen Pract. 1999 Jan; 49(438):45-6. Suchard MA, Yudkin P, Sinsheimer JS, Fowler GH. PMID: 10622017; PMCID: PMC1313318.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
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