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Miller, Jeffery Floyd

Title(s)Professor, Mimg
Phone67926
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    Collapse Research 
    Collapse Research Activities and Funding
    Diversity-Generation and Variable Protein Displays in Pathogens and Phage
    NIH/NIAID R01AI096838Feb 15, 2012 - Jan 31, 2017
    Role: Principal Investigator
    Variable-Protein Surface Display in Treponema denticola
    NIH/NIDCR R21DE021528Mar 1, 2011 - Feb 28, 2013
    Role: Principal Investigator
    Diversity-Generating Retroelements in Phage and Bacterial Genomes
    NIH/NIAID R01AI071204Aug 1, 2006 - Jul 31, 2012
    Role: Principal Investigator
    Type III Secretion in Bordetella
    NIH/NIAID R01AI061598Jul 1, 2004 - Jun 30, 2010
    Role: Principal Investigator
    RECOMBINANT LISTERIA VACCINES FOR MELANOMA
    NIH/NCI R01CA084008Feb 5, 2000 - Jan 31, 2005
    Role: Principal Investigator
    L MONOCYTOGENES AS A LIVE VACCINE VEHICLE
    NIH/NIAID R21AI038955Sep 30, 1996 - Sep 29, 1998
    Role: Principal Investigator
    BORDETELLA VIRULENCE REGULON IN VITRO AND IN VIVO
    NIH/NIAID R01AI038417Jul 1, 1995 - Mar 31, 2007
    Role: Principal Investigator
    SENSORY TRANSDUCTION AND THE BORDETELLA-HOST INTERACTION
    NIH/NIAID R29AI031548Jul 1, 1991 - Jun 30, 1996
    Role: Principal Investigator
    Multidisciplinary Training in Microbial Pathogenesis
    NIH/NIAID T32AI007323Sep 1, 1988 - May 31, 1998
    Role: Co-Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. French CT, Bulterys PL, Woodward CL, Tatters AO, Ng KR, Miller JF. Virulence from the rhizosphere: ecology and evolution of Burkholderia pseudomallei-complex species. Curr Opin Microbiol. 2020 Feb 03; 54:18-32. PMID: 32028234.
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    2. Bulterys PL, Toesca IJ, Norris MH, Maloy JP, Fitz-Gibbon ST, France B, Toffig B, Morselli M, Somprasong N, Pellegrini M, Schweizer HP, Tuanyok A, Damoiseaux R, French CT, Miller JF. An in situ high-throughput screen identifies inhibitors of intracellular Burkholderia pseudomallei with therapeutic efficacy. Proc Natl Acad Sci U S A. 2019 Sep 10; 116(37):18597-18606. PMID: 31439817.
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    3. Zoller SD, Park HY, Olafsen T, Zamilpa C, Burke ZD, Blumstein G, Sheppard WL, Hamad CD, Hori KR, Tseng JC, Czupryna J, McMannus C, Lee JT, Bispo M, Romero Pastrana F, Raineri EJ, Miller JF, Miller LS, van Dijl JM, Francis KP, Bernthal NM. Multimodal imaging guides surgical management in a preclinical spinal implant infection model. JCI Insight. 2019 Feb 07; 4(3). PMID: 30728332.
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    4. Bulterys PL, Bulterys MA, Phommasone K, Luangraj M, Mayxay M, Kloprogge S, Miliya T, Vongsouvath M, Newton PN, Phetsouvanh R, French CT, Miller JF, Turner P, Dance DAB. Climatic drivers of melioidosis in Laos and Cambodia: a 16-year case series analysis. Lancet Planet Health. 2018 08; 2(8):e334-e343. PMID: 30082048.
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    5. Cheng L, Marinelli LJ, Grosset N, Fitz-Gibbon ST, Bowman CA, Dang BQ, Russell DA, Jacobs-Sera D, Shi B, Pellegrini M, Miller JF, Gautier M, Hatfull GF, Modlin RL. Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages. BMC Microbiol. 2018 03 01; 18(1):19. PMID: 29490612.
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    6. Wu L, Gingery M, Abebe M, Arambula D, Czornyj E, Handa S, Khan H, Liu M, Pohlschroder M, Shaw KL, Du A, Guo H, Ghosh P, Miller JF, Zimmerly S. Diversity-generating retroelements: natural variation, classification and evolution inferred from a large-scale genomic survey. Nucleic Acids Res. 2018 01 09; 46(1):11-24. PMID: 29186518.
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    7. Naorem SS, Han J, Wang S, Lee WR, Heng X, Miller JF, Guo H. DGR mutagenic transposition occurs via hypermutagenic reverse transcription primed by nicked template RNA. Proc Natl Acad Sci U S A. 2017 11 21; 114(47):E10187-E10195. PMID: 29109248.
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    8. Li R, Mansukhani ND, Guiney LM, Ji Z, Zhao Y, Chang CH, French CT, Miller JF, Hersam MC, Nel AE, Xia T. Identification and Optimization of Carbon Radicals on Hydrated Graphene Oxide for Ubiquitous Antibacterial Coatings. ACS Nano. 2016 12 27; 10(12):10966-10980. PMID: 28024366.
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    9. Ahuja U, Shokeen B, Cheng N, Cho Y, Blum C, Coppola G, Miller JF. Differential regulation of type III secretion and virulence genes in Bordetella pertussis and Bordetella bronchiseptica by a secreted anti-s factor. Proc Natl Acad Sci U S A. 2016 Mar 01; 113(9):2341-8. PMID: 26884180.
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    10. Ge P, Scholl D, Leiman PG, Yu X, Miller JF, Zhou ZH. Atomic structures of a bactericidal contractile nanotube in its pre- and postcontraction states. Nat Struct Mol Biol. 2015 May; 22(5):377-82. PMID: 25822993.
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    11. Zhang X, Guo H, Jin L, Czornyj E, Hodes A, Hui WH, Nieh AW, Miller JF, Zhou ZH. Correction: A new topology of the HK97-like fold revealed in Bordetella bacteriophage by cryoEM at 3.5 Å resolution. Elife. 2015 Mar 18; 4. PMID: 25785908.
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    12. Balaji K, French CT, Miller JF, Colicelli J. The RAB5-GEF Function of RIN1 Regulates Multiple Steps During Listeria monocytogenes Infection. Traffic. 2015 Jul; 16(7):796. PMID: 26050999.
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    13. Guo H, Arambula D, Ghosh P, Miller JF. Diversity-generating Retroelements in Phage and Bacterial Genomes. Microbiol Spectr. 2014 Dec; 2(6). PMID: 26104433.
      View in: PubMed
    14. Balaji K, French CT, Miller JF, Colicelli J. The RAB5-GEF function of RIN1 regulates multiple steps during Listeria monocytogenes infection. Traffic. 2014 Nov; 15(11):1206-18. PMID: 25082076.
      View in: PubMed
    15. Chen Y, Schröder I, French CT, Jaroszewicz A, Yee XJ, Teh BE, Toesca IJ, Miller JF, Gan YH. Characterization and analysis of the Burkholderia pseudomallei BsaN virulence regulon. BMC Microbiol. 2014 Aug 01; 14:206. PMID: 25085508.
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    16. Teh BE, French CT, Chen Y, Chen IG, Wu TH, Sagullo E, Chiou PY, Teitell MA, Miller JF, Gan YH. Type three secretion system-mediated escape of Burkholderia pseudomallei into the host cytosol is critical for the activation of NF?B. BMC Microbiol. 2014 May 06; 14:115. PMID: 24884837.
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    17. Melvin JA, Scheller EV, Miller JF, Cotter PA. Bordetella pertussis pathogenesis: current and future challenges. Nat Rev Microbiol. 2014 Apr; 12(4):274-88. PMID: 24608338.
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    18. Toesca IJ, French CT, Miller JF. The Type VI secretion system spike protein VgrG5 mediates membrane fusion during intercellular spread by pseudomallei group Burkholderia species. Infect Immun. 2014 Apr; 82(4):1436-44. PMID: 24421040.
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    19. Zhang X, Guo H, Jin L, Czornyj E, Hodes A, Hui WH, Nieh AW, Miller JF, Zhou ZH. A new topology of the HK97-like fold revealed in Bordetella bacteriophage by cryoEM at 3.5 A resolution. Elife. 2013 Dec 17; 2:e01299. PMID: 24347545.
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    20. Arambula D, Wong W, Medhekar BA, Guo H, Gingery M, Czornyj E, Liu M, Dey S, Ghosh P, Miller JF. Surface display of a massively variable lipoprotein by a Legionella diversity-generating retroelement. Proc Natl Acad Sci U S A. 2013 May 14; 110(20):8212-7. PMID: 23633572.
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    21. Miller JF. Gaming the competition in microbial cell-cell interactions. EMBO J. 2013 Mar 20; 32(6):778-80. PMID: 23443046.
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    22. Fitz-Gibbon S, Tomida S, Chiu BH, Nguyen L, Du C, Liu M, Elashoff D, Erfe MC, Loncaric A, Kim J, Modlin RL, Miller JF, Sodergren E, Craft N, Weinstock GM, Li H. Propionibacterium acnes strain populations in the human skin microbiome associated with acne. J Invest Dermatol. 2013 Sep; 133(9):2152-60. PMID: 23337890.
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    23. Marinelli LJ, Fitz-Gibbon S, Hayes C, Bowman C, Inkeles M, Loncaric A, Russell DA, Jacobs-Sera D, Cokus S, Pellegrini M, Kim J, Miller JF, Hatfull GF, Modlin RL. Propionibacterium acnes bacteriophages display limited genetic diversity and broad killing activity against bacterial skin isolates. mBio. 2012; 3(5). PMID: 23015740.
      View in: PubMed
    24. Ahuja U, Liu M, Tomida S, Park J, Souda P, Whitelegge J, Li H, Harvill ET, Parkhill J, Miller JF. Phenotypic and genomic analysis of hypervirulent human-associated Bordetella bronchiseptica. BMC Microbiol. 2012 Aug 06; 12:167. PMID: 22863321.
      View in: PubMed
    25. Zhang X, Guo H, Jin L, Xu M, Miller JF, Zhou ZH. Atomic Structure of Bordetella Bacteriophage Reveals a Jellyroll Fold in CementProtein and a Topologically Distinct HK97-like Fold in Major Capsid Protein. Microsc Microanal. 2012 Jul; 18(Suppl 2):72-73. PMID: 25197259.
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    26. Guo H, Tse LV, Nieh AW, Czornyj E, Williams S, Oukil S, Liu VB, Miller JF. Target site recognition by a diversity-generating retroelement. PLoS Genet. 2011 Dec; 7(12):e1002414. PMID: 22194701.
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    27. French CT, Toesca IJ, Wu TH, Teslaa T, Beaty SM, Wong W, Liu M, Schröder I, Chiou PY, Teitell MA, Miller JF. Dissection of the Burkholderia intracellular life cycle using a photothermal nanoblade. Proc Natl Acad Sci U S A. 2011 Jul 19; 108(29):12095-100. PMID: 21730143.
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    28. Wu TH, Teslaa T, Kalim S, French CT, Moghadam S, Wall R, Miller JF, Witte ON, Teitell MA, Chiou PY. Photothermal nanoblade for large cargo delivery into mammalian cells. Anal Chem. 2011 Feb 15; 83(4):1321-7. PMID: 21247066.
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    29. Dai W, Hodes A, Hui WH, Gingery M, Miller JF, Zhou ZH. Three-dimensional structure of tropism-switching Bordetella bacteriophage. Proc Natl Acad Sci U S A. 2010 Mar 02; 107(9):4347-52. PMID: 20160083.
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    30. French CT, Panina EM, Yeh SH, Griffith N, Arambula DG, Miller JF. The Bordetella type III secretion system effector BteA contains a conserved N-terminal motif that guides bacterial virulence factors to lipid rafts. Cell Microbiol. 2009 Dec; 11(12):1735-49. PMID: 19650828.
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    31. Liu SD, Tomassian T, Bruhn KW, Miller JF, Poirier F, Miceli MC. Galectin-1 tunes TCR binding and signal transduction to regulate CD8 burst size. J Immunol. 2009 May 01; 182(9):5283-95. PMID: 19380775.
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    32. Shrivastava R, Miller JF. Virulence factor secretion and translocation by Bordetella species. Curr Opin Microbiol. 2009 Feb; 12(1):88-93. PMID: 19186097.
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    33. Medhekar B, Shrivastava R, Mattoo S, Gingery M, Miller JF. Bordetella Bsp22 forms a filamentous type III secretion system tip complex and is immunoprotective in vitro and in vivo. Mol Microbiol. 2009 Jan; 71(2):492-504. PMID: 19040642.
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    34. Guo H, Tse LV, Barbalat R, Sivaamnuaiphorn S, Xu M, Doulatov S, Miller JF. Diversity-generating retroelement homing regenerates target sequences for repeated rounds of codon rewriting and protein diversification. Mol Cell. 2008 Sep 26; 31(6):813-23. PMID: 18922465.
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    35. Medhekar B, Miller JF. Diversity-generating retroelements. Curr Opin Microbiol. 2007 Aug; 10(4):388-95. PMID: 17703991.
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    36. Bruhn KW, Craft N, Miller JF. Listeria as a vaccine vector. Microbes Infect. 2007 Aug; 9(10):1226-35. PMID: 17719258.
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    37. Prins RM, Bruhn KW, Craft N, Lin JW, Kim CH, Odesa SK, Miller JF, Liau LM. Central nervous system tumor immunity generated by a recombinant listeria monocytogenes vaccine targeting tyrosinase related protein-2 and real-time imaging of intracranial tumor burden. Neurosurgery. 2006 Jan; 58(1):169-78; discussion 169-78. PMID: 16385341.
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    38. Prins RM, Craft N, Bruhn KW, Khan-Farooqi H, Koya RC, Stripecke R, Miller JF, Liau LM. The TLR-7 agonist, imiquimod, enhances dendritic cell survival and promotes tumor antigen-specific T cell priming: relation to central nervous system antitumor immunity. J Immunol. 2006 Jan 01; 176(1):157-64. PMID: 16365406.
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    39. Foreman-Wykert AK, Miller JF. A new animal model of Bordetella pertussis infection and immunity. Trends Microbiol. 2005 Dec; 13(12):559-60. PMID: 16223585.
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    40. Panina EM, Mattoo S, Griffith N, Kozak NA, Yuk MH, Miller JF. A genome-wide screen identifies a Bordetella type III secretion effector and candidate effectors in other species. Mol Microbiol. 2005 Oct; 58(1):267-79. PMID: 16164564.
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    41. Craft N, Bruhn KW, Nguyen BD, Prins R, Lin JW, Liau LM, Miller JF. The TLR7 agonist imiquimod enhances the anti-melanoma effects of a recombinant Listeria monocytogenes vaccine. J Immunol. 2005 Aug 01; 175(3):1983-90. PMID: 16034143.
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    42. Kozak NA, Mattoo S, Foreman-Wykert AK, Whitelegge JP, Miller JF. Interactions between partner switcher orthologs BtrW and BtrV regulate type III secretion in Bordetella. J Bacteriol. 2005 Aug; 187(16):5665-76. PMID: 16077112.
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    43. Craft N, Bruhn KW, Nguyen BD, Prins R, Liau LM, Collisson EA, De A, Kolodney MS, Gambhir SS, Miller JF. Bioluminescent imaging of melanoma in live mice. J Invest Dermatol. 2005 Jul; 125(1):159-165. PMID: 15982316.
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    44. Bruhn KW, Craft N, Nguyen BD, Yip J, Miller JF. Characterization of anti-self CD8 T-cell responses stimulated by recombinant Listeria monocytogenes expressing the melanoma antigen TRP-2. Vaccine. 2005 Jul 21; 23(33):4263-72. PMID: 15913853.
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    45. Vergara-Irigaray N, Chávarri-Martínez A, Rodríguez-Cuesta J, Miller JF, Cotter PA, Martínez de Tejada G. Evaluation of the role of the Bvg intermediate phase in Bordetella pertussis during experimental respiratory infection. Infect Immun. 2005 Feb; 73(2):748-60. PMID: 15664913.
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    46. Widney DP, Hu Y, Foreman-Wykert AK, Bui KC, Nguyen TT, Lu B, Gerard C, Miller JF, Smith JB. CXCR3 and its ligands participate in the host response to Bordetella bronchiseptica infection of the mouse respiratory tract but are not required for clearance of bacteria from the lung. Infect Immun. 2005 Jan; 73(1):485-93. PMID: 15618188.
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    47. MacKichan JK, Gaynor EC, Chang C, Cawthraw S, Newell DG, Miller JF, Falkow S. The Campylobacter jejuni dccRS two-component system is required for optimal in vivo colonization but is dispensable for in vitro growth. Mol Microbiol. 2004 Dec; 54(5):1269-86. PMID: 15554967.
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    48. Joseph SB, Bradley MN, Castrillo A, Bruhn KW, Mak PA, Pei L, Hogenesch J, O'connell RM, Cheng G, Saez E, Miller JF, Tontonoz P. LXR-dependent gene expression is important for macrophage survival and the innate immune response. Cell. 2004 Oct 15; 119(2):299-309. PMID: 15479645.
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    49. Doulatov S, Hodes A, Dai L, Mandhana N, Liu M, Deora R, Simons RW, Zimmerly S, Miller JF. Tropism switching in Bordetella bacteriophage defines a family of diversity-generating retroelements. Nature. 2004 Sep 23; 431(7007):476-81. PMID: 15386016.
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    50. O'Connell RM, Saha SK, Vaidya SA, Bruhn KW, Miranda GA, Zarnegar B, Perry AK, Nguyen BO, Lane TF, Taniguchi T, Miller JF, Cheng G. Type I interferon production enhances susceptibility to Listeria monocytogenes infection. J Exp Med. 2004 Aug 16; 200(4):437-45. PMID: 15302901.
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    51. Liu M, Gingery M, Doulatov SR, Liu Y, Hodes A, Baker S, Davis P, Simmonds M, Churcher C, Mungall K, Quail MA, Preston A, Harvill ET, Maskell DJ, Eiserling FA, Parkhill J, Miller JF. Genomic and genetic analysis of Bordetella bacteriophages encoding reverse transcriptase-mediated tropism-switching cassettes. J Bacteriol. 2004 Mar; 186(5):1503-17. PMID: 14973019.
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    52. Miller JF. Bacteriophage and the evolution of epidemic cholera. Infect Immun. 2003 Jun; 71(6):2981-2. PMID: 12761073.
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    53. Foreman-Wykert AK, Miller JF. Hypervirulence and pathogen fitness. Trends Microbiol. 2003 Mar; 11(3):105-8. PMID: 12648937.
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    54. Stockbauer KE, Foreman-Wykert AK, Miller JF. Bordetella type III secretion induces caspase 1-independent necrosis. Cell Microbiol. 2003 Feb; 5(2):123-32. PMID: 12580948.
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    55. Angelakopoulos H, Loock K, Sisul DM, Jensen ER, Miller JF, Hohmann EL. Safety and shedding of an attenuated strain of Listeria monocytogenes with a deletion of actA/plcB in adult volunteers: a dose escalation study of oral inoculation. Infect Immun. 2002 Jul; 70(7):3592-601. PMID: 12065500.
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    56. Heininger U, Cotter PA, Fescemyer HW, Martinez de Tejada G, Yuk MH, Miller JF, Harvill ET. Comparative phenotypic analysis of the Bordetella parapertussis isolate chosen for genomic sequencing. Infect Immun. 2002 Jul; 70(7):3777-84. PMID: 12065521.
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    57. Liau LM, Jensen ER, Kremen TJ, Odesa SK, Sykes SN, Soung MC, Miller JF, Bronstein JM. Tumor immunity within the central nervous system stimulated by recombinant Listeria monocytogenes vaccination. Cancer Res. 2002 Apr 15; 62(8):2287-93. PMID: 11956085.
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    58. Liu M, Deora R, Doulatov SR, Gingery M, Eiserling FA, Preston A, Maskell DJ, Simons RW, Cotter PA, Parkhill J, Miller JF. Reverse transcriptase-mediated tropism switching in Bordetella bacteriophage. Science. 2002 Mar 15; 295(5562):2091-4. PMID: 11896279.
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    59. Chin AI, Dempsey PW, Bruhn K, Miller JF, Xu Y, Cheng G. Involvement of receptor-interacting protein 2 in innate and adaptive immune responses. Nature. 2002 Mar 14; 416(6877):190-4. PMID: 11894097.
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