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Accelerated Evolution by Diversity-Generating Retroelements. Annu Rev Microbiol. 2022 09 08; 76:389-411.
Macadangdang BR, Makanani SK, Miller JF. PMID: 35650669.
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PubMed Mentions:
6 Fields:
Translation:
Cells
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Nano-Enabled COVID-19 Vaccines: Meeting the Challenges of Durable Antibody Plus Cellular Immunity and Immune Escape. ACS Nano. 2021 04 27; 15(4):5793-5818.
Nel AE, Miller JF. PMID: 33793189; PMCID: PMC8029448.
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PubMed Mentions:
19 Fields:
Translation:
HumansCellsPHPublic Health
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Evading the host response: Staphylococcus "hiding" in cortical bone canalicular system causes increased bacterial burden. Bone Res. 2020 Dec 10; 8(1):43.
Zoller SD, Hegde V, Burke ZDC, Park HY, Ishmael CR, Blumstein GW, Sheppard W, Hamad C, Loftin AH, Johansen DO, Smith RA, Sprague MM, Hori KR, Clarkson SJ, Borthwell R, Simon SI, Miller JF, Nelson SD, Bernthal NM. PMID: 33303744; PMCID: PMC7728749.
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PubMed Mentions:
17 Fields:
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Action of a minimal contractile bactericidal nanomachine. Nature. 2020 04; 580(7805):658-662.
Ge P, Scholl D, Prokhorov NS, Avaylon J, Shneider MM, Browning C, Buth SA, Plattner M, Chakraborty U, Ding K, Leiman PG, Miller JF, Zhou ZH. PMID: 32350467; PMCID: PMC7513463.
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PubMed Mentions:
35 Fields:
Translation:
Cells
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Virulence from the rhizosphere: ecology and evolution of Burkholderia pseudomallei-complex species. Curr Opin Microbiol. 2020 04; 54:18-32.
French CT, Bulterys PL, Woodward CL, Tatters AO, Ng KR, Miller JF. PMID: 32028234.
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PubMed Mentions:
4 Fields:
Translation:
HumansAnimalsCells
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An in situ high-throughput screen identifies inhibitors of intracellular Burkholderia pseudomallei with therapeutic efficacy. Proc Natl Acad Sci U S A. 2019 09 10; 116(37):18597-18606.
Bulterys PL, Toesca IJ, Norris MH, Maloy JP, Fitz-Gibbon ST, France B, Toffig B, Morselli M, Somprasong N, Pellegrini M, Schweizer HP, Tuanyok A, Damoiseaux R, French CT, Miller JF. PMID: 31439817; PMCID: PMC6744847.
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PubMed Mentions:
7 Fields:
Translation:
HumansAnimalsCells
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Multimodal imaging guides surgical management in a preclinical spinal implant infection model. JCI Insight. 2019 Feb 07; 4(3).
Zoller SD, Park HY, Olafsen T, Zamilpa C, Burke ZD, Blumstein G, Sheppard WL, Hamad CD, Hori KR, Tseng JC, Czupryna J, McMannus C, Lee JT, Bispo M, Romero Pastrana F, Raineri EJ, Miller JF, Miller LS, van Dijl JM, Francis KP, Bernthal NM. PMID: 30728332; PMCID: PMC6413782.
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PubMed Mentions:
10 Fields:
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Climatic drivers of melioidosis in Laos and Cambodia: a 16-year case series analysis. Lancet Planet Health. 2018 08; 2(8):e334-e343.
Bulterys PL, Bulterys MA, Phommasone K, Luangraj M, Mayxay M, Kloprogge S, Miliya T, Vongsouvath M, Newton PN, Phetsouvanh R, French CT, Miller JF, Turner P, Dance DAB. PMID: 30082048; PMCID: PMC6076299.
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PubMed Mentions:
15 Fields:
Translation:
HumansCells
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Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages. BMC Microbiol. 2018 03 01; 18(1):19.
Cheng L, Marinelli LJ, Grosset N, Fitz-Gibbon ST, Bowman CA, Dang BQ, Russell DA, Jacobs-Sera D, Shi B, Pellegrini M, Miller JF, Gautier M, Hatfull GF, Modlin RL. PMID: 29490612; PMCID: PMC5831693.
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PubMed Mentions:
7 Fields:
Translation:
Cells
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Diversity-generating retroelements: natural variation, classification and evolution inferred from a large-scale genomic survey. Nucleic Acids Res. 2018 01 09; 46(1):11-24.
Wu L, Gingery M, Abebe M, Arambula D, Czornyj E, Handa S, Khan H, Liu M, Pohlschroder M, Shaw KL, Du A, Guo H, Ghosh P, Miller JF, Zimmerly S. PMID: 29186518; PMCID: PMC5758913.
View in:
PubMed Mentions:
35 Fields:
Translation:
Cells
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DGR mutagenic transposition occurs via hypermutagenic reverse transcription primed by nicked template RNA. Proc Natl Acad Sci U S A. 2017 11 21; 114(47):E10187-E10195.
Naorem SS, Han J, Wang S, Lee WR, Heng X, Miller JF, Guo H. PMID: 29109248; PMCID: PMC5703328.
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PubMed Mentions:
11 Fields:
Translation:
Cells
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Identification and Optimization of Carbon Radicals on Hydrated Graphene Oxide for Ubiquitous Antibacterial Coatings. ACS Nano. 2016 12 27; 10(12):10966-10980.
Li R, Mansukhani ND, Guiney LM, Ji Z, Zhao Y, Chang CH, French CT, Miller JF, Hersam MC, Nel AE, Xia T. PMID: 28024366; PMCID: PMC5612796.
View in:
PubMed Mentions:
34 Fields:
Translation:
Cells
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Differential regulation of type III secretion and virulence genes in Bordetella pertussis and Bordetella bronchiseptica by a secreted anti-σ factor. Proc Natl Acad Sci U S A. 2016 Mar 01; 113(9):2341-8.
Ahuja U, Shokeen B, Cheng N, Cho Y, Blum C, Coppola G, Miller JF. PMID: 26884180; PMCID: PMC4780644.
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PubMed Mentions:
27 Fields:
Translation:
Cells
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Atomic structures of a bactericidal contractile nanotube in its pre- and postcontraction states. Nat Struct Mol Biol. 2015 May; 22(5):377-82.
Ge P, Scholl D, Leiman PG, Yu X, Miller JF, Zhou ZH. PMID: 25822993; PMCID: PMC4445970.
View in:
PubMed Mentions:
84 Fields:
Translation:
Cells
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Correction: A new topology of the HK97-like fold revealed in Bordetella bacteriophage by cryoEM at 3.5 Å resolution. Elife. 2015 Mar 18; 4.
Zhang X, Guo H, Jin L, Czornyj E, Hodes A, Hui WH, Nieh AW, Miller JF, Zhou ZH. PMID: 25785908; PMCID: PMC4363876.
View in:
PubMed Mentions:
1 Fields:
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The RAB5-GEF Function of RIN1 Regulates Multiple Steps During Listeria monocytogenes Infection. Traffic. 2015 Jul; 16(7):796.
Balaji K, French CT, Miller JF, Colicelli J. PMID: 26050999.
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PubMed Mentions: Fields:
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Diversity-generating Retroelements in Phage and Bacterial Genomes. Microbiol Spectr. 2014 Dec; 2(6).
Guo H, Arambula D, Ghosh P, Miller JF. PMID: 26104433; PMCID: PMC4498404.
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PubMed Mentions:
33 Fields:
Translation:
Cells
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The RAB5-GEF function of RIN1 regulates multiple steps during Listeria monocytogenes infection. Traffic. 2014 Nov; 15(11):1206-18.
Balaji K, French CT, Miller JF, Colicelli J. PMID: 25082076; PMCID: PMC4282165.
View in:
PubMed Mentions:
2 Fields:
Translation:
HumansAnimalsCells
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Characterization and analysis of the Burkholderia pseudomallei BsaN virulence regulon. BMC Microbiol. 2014 Aug 01; 14:206.
Chen Y, Schröder I, French CT, Jaroszewicz A, Yee XJ, Teh BE, Toesca IJ, Miller JF, Gan YH. PMID: 25085508; PMCID: PMC4236580.
View in:
PubMed Mentions:
19 Fields:
Translation:
Cells
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Type three secretion system-mediated escape of Burkholderia pseudomallei into the host cytosol is critical for the activation of NFκB. BMC Microbiol. 2014 May 06; 14:115.
Teh BE, French CT, Chen Y, Chen IG, Wu TH, Sagullo E, Chiou PY, Teitell MA, Miller JF, Gan YH. PMID: 24884837; PMCID: PMC4026835.
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PubMed Mentions:
8 Fields:
Translation:
HumansCells
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Bordetella pertussis pathogenesis: current and future challenges. Nat Rev Microbiol. 2014 Apr; 12(4):274-88.
Melvin JA, Scheller EV, Miller JF, Cotter PA. PMID: 24608338; PMCID: PMC4205565.
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PubMed Mentions:
151 Fields:
Translation:
HumansCells
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The Type VI secretion system spike protein VgrG5 mediates membrane fusion during intercellular spread by pseudomallei group Burkholderia species. Infect Immun. 2014 Apr; 82(4):1436-44.
Toesca IJ, French CT, Miller JF. PMID: 24421040; PMCID: PMC3993413.
View in:
PubMed Mentions:
56 Fields:
Translation:
HumansCells
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A new topology of the HK97-like fold revealed in Bordetella bacteriophage by cryoEM at 3.5 A resolution. Elife. 2013 Dec 17; 2:e01299.
Zhang X, Guo H, Jin L, Czornyj E, Hodes A, Hui WH, Nieh AW, Miller JF, Zhou ZH. PMID: 24347545; PMCID: PMC3863775.
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PubMed Mentions:
37 Fields:
Translation:
Cells
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Surface display of a massively variable lipoprotein by a Legionella diversity-generating retroelement. Proc Natl Acad Sci U S A. 2013 May 14; 110(20):8212-7.
Arambula D, Wong W, Medhekar BA, Guo H, Gingery M, Czornyj E, Liu M, Dey S, Ghosh P, Miller JF. PMID: 23633572; PMCID: PMC3657778.
View in:
PubMed Mentions:
32 Fields:
Translation:
Cells
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Gaming the competition in microbial cell-cell interactions. EMBO J. 2013 Mar 20; 32(6):778-80.
Miller JF. PMID: 23443046; PMCID: PMC3604729.
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PubMed Mentions:
2 Fields:
Translation:
HumansAnimalsCells
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Propionibacterium acnes strain populations in the human skin microbiome associated with acne. J Invest Dermatol. 2013 Sep; 133(9):2152-60.
Fitz-Gibbon S, Tomida S, Chiu BH, Nguyen L, Du C, Liu M, Elashoff D, Erfe MC, Loncaric A, Kim J, Modlin RL, Miller JF, Sodergren E, Craft N, Weinstock GM, Li H. PMID: 23337890; PMCID: PMC3745799.
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PubMed Mentions:
277 Fields:
Translation:
HumansCells
-
Propionibacterium acnes bacteriophages display limited genetic diversity and broad killing activity against bacterial skin isolates. mBio. 2012; 3(5).
Marinelli LJ, Fitz-Gibbon S, Hayes C, Bowman C, Inkeles M, Loncaric A, Russell DA, Jacobs-Sera D, Cokus S, Pellegrini M, Kim J, Miller JF, Hatfull GF, Modlin RL. PMID: 23015740; PMCID: PMC3448167.
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PubMed Mentions:
55 Fields:
Translation:
HumansCells
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Phenotypic and genomic analysis of hypervirulent human-associated Bordetella bronchiseptica. BMC Microbiol. 2012 Aug 06; 12:167.
Ahuja U, Liu M, Tomida S, Park J, Souda P, Whitelegge J, Li H, Harvill ET, Parkhill J, Miller JF. PMID: 22863321; PMCID: PMC3462115.
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PubMed Mentions:
11 Fields:
Translation:
HumansAnimalsCells
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Atomic Structure of Bordetella Bacteriophage Reveals a Jellyroll Fold in CementProtein and a Topologically Distinct HK97-like Fold in Major Capsid Protein. Microsc Microanal. 2012 Jul; 18(Suppl 2):72-73.
Zhang X, Guo H, Jin L, Xu M, Miller JF, Zhou ZH. PMID: 25197259; PMCID: PMC4156034.
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PubMed Mentions:
1 Fields:
-
Target site recognition by a diversity-generating retroelement. PLoS Genet. 2011 Dec; 7(12):e1002414.
Guo H, Tse LV, Nieh AW, Czornyj E, Williams S, Oukil S, Liu VB, Miller JF. PMID: 22194701; PMCID: PMC3240598.
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PubMed Mentions:
19 Fields:
Translation:
Cells
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Dissection of the Burkholderia intracellular life cycle using a photothermal nanoblade. Proc Natl Acad Sci U S A. 2011 Jul 19; 108(29):12095-100.
French CT, Toesca IJ, Wu TH, Teslaa T, Beaty SM, Wong W, Liu M, Schröder I, Chiou PY, Teitell MA, Miller JF. PMID: 21730143; PMCID: PMC3141958.
View in:
PubMed Mentions:
98 Fields:
Translation:
HumansCells
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Photothermal nanoblade for large cargo delivery into mammalian cells. Anal Chem. 2011 Feb 15; 83(4):1321-7.
Wu TH, Teslaa T, Kalim S, French CT, Moghadam S, Wall R, Miller JF, Witte ON, Teitell MA, Chiou PY. PMID: 21247066; PMCID: PMC3166650.
View in:
PubMed Mentions:
27 Fields:
Translation:
HumansCells
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Three-dimensional structure of tropism-switching Bordetella bacteriophage. Proc Natl Acad Sci U S A. 2010 Mar 02; 107(9):4347-52.
Dai W, Hodes A, Hui WH, Gingery M, Miller JF, Zhou ZH. PMID: 20160083; PMCID: PMC2840154.
View in:
PubMed Mentions:
32 Fields:
Translation:
Cells
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The Bordetella type III secretion system effector BteA contains a conserved N-terminal motif that guides bacterial virulence factors to lipid rafts. Cell Microbiol. 2009 Dec; 11(12):1735-49.
French CT, Panina EM, Yeh SH, Griffith N, Arambula DG, Miller JF. PMID: 19650828; PMCID: PMC2788067.
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PubMed Mentions:
35 Fields:
Translation:
HumansAnimalsCells
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Galectin-1 tunes TCR binding and signal transduction to regulate CD8 burst size. J Immunol. 2009 May 01; 182(9):5283-95.
Liu SD, Tomassian T, Bruhn KW, Miller JF, Poirier F, Miceli MC. PMID: 19380775.
View in:
PubMed Mentions:
18 Fields:
Translation:
AnimalsCells
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Virulence factor secretion and translocation by Bordetella species. Curr Opin Microbiol. 2009 Feb; 12(1):88-93.
Shrivastava R, Miller JF. PMID: 19186097; PMCID: PMC2703423.
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PubMed Mentions:
34 Fields:
Translation:
HumansCells
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Bordetella Bsp22 forms a filamentous type III secretion system tip complex and is immunoprotective in vitro and in vivo. Mol Microbiol. 2009 Jan; 71(2):492-504.
Medhekar B, Shrivastava R, Mattoo S, Gingery M, Miller JF. PMID: 19040642; PMCID: PMC2826148.
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PubMed Mentions:
25 Fields:
Translation:
AnimalsCells
-
Diversity-generating retroelement homing regenerates target sequences for repeated rounds of codon rewriting and protein diversification. Mol Cell. 2008 Sep 26; 31(6):813-23.
Guo H, Tse LV, Barbalat R, Sivaamnuaiphorn S, Xu M, Doulatov S, Miller JF. PMID: 18922465; PMCID: PMC2703419.
View in:
PubMed Mentions:
24 Fields:
Translation:
Cells
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Diversity-generating retroelements. Curr Opin Microbiol. 2007 Aug; 10(4):388-95.
Medhekar B, Miller JF. PMID: 17703991; PMCID: PMC2703298.
View in:
PubMed Mentions:
57 Fields:
Translation:
Cells
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Listeria as a vaccine vector. Microbes Infect. 2007 Aug; 9(10):1226-35.
Bruhn KW, Craft N, Miller JF. PMID: 17719258.
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PubMed Mentions:
27 Fields:
Translation:
HumansAnimalsCells
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Central nervous system tumor immunity generated by a recombinant listeria monocytogenes vaccine targeting tyrosinase related protein-2 and real-time imaging of intracranial tumor burden. Neurosurgery. 2006 Jan; 58(1):169-78; discussion 169-78.
Prins RM, Bruhn KW, Craft N, Lin JW, Kim CH, Odesa SK, Miller JF, Liau LM. PMID: 16385341.
View in:
PubMed Mentions:
8 Fields:
Translation:
AnimalsCellsPHPublic Health
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The TLR-7 agonist, imiquimod, enhances dendritic cell survival and promotes tumor antigen-specific T cell priming: relation to central nervous system antitumor immunity. J Immunol. 2006 Jan 01; 176(1):157-64.
Prins RM, Craft N, Bruhn KW, Khan-Farooqi H, Koya RC, Stripecke R, Miller JF, Liau LM. PMID: 16365406.
View in:
PubMed Mentions:
89 Fields:
Translation:
HumansAnimalsCells
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A new animal model of Bordetella pertussis infection and immunity. Trends Microbiol. 2005 Dec; 13(12):559-60.
Foreman-Wykert AK, Miller JF. PMID: 16223585.
View in:
PubMed Mentions:
2 Fields:
Translation:
AnimalsCells
-
A genome-wide screen identifies a Bordetella type III secretion effector and candidate effectors in other species. Mol Microbiol. 2005 Oct; 58(1):267-79.
Panina EM, Mattoo S, Griffith N, Kozak NA, Yuk MH, Miller JF. PMID: 16164564.
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PubMed Mentions:
48 Fields:
Translation:
Cells
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Interactions between partner switcher orthologs BtrW and BtrV regulate type III secretion in Bordetella. J Bacteriol. 2005 Aug; 187(16):5665-76.
Kozak NA, Mattoo S, Foreman-Wykert AK, Whitelegge JP, Miller JF. PMID: 16077112; PMCID: PMC1196064.
View in:
PubMed Mentions:
27 Fields:
Translation:
Cells
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The TLR7 agonist imiquimod enhances the anti-melanoma effects of a recombinant Listeria monocytogenes vaccine. J Immunol. 2005 Aug 01; 175(3):1983-90.
Craft N, Bruhn KW, Nguyen BD, Prins R, Lin JW, Liau LM, Miller JF. PMID: 16034143.
View in:
PubMed Mentions:
34 Fields:
Translation:
AnimalsCells
-
Bioluminescent imaging of melanoma in live mice. J Invest Dermatol. 2005 Jul; 125(1):159-165.
Craft N, Bruhn KW, Nguyen BD, Prins R, Liau LM, Collisson EA, De A, Kolodney MS, Gambhir SS, Miller JF. PMID: 15982316; PMCID: PMC4141554.
View in:
PubMed Mentions:
24 Fields:
Translation:
HumansAnimals
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Characterization of anti-self CD8 T-cell responses stimulated by recombinant Listeria monocytogenes expressing the melanoma antigen TRP-2. Vaccine. 2005 Jul 21; 23(33):4263-72.
Bruhn KW, Craft N, Nguyen BD, Yip J, Miller JF. PMID: 15913853.
View in:
PubMed Mentions:
10 Fields:
Translation:
AnimalsCells
-
Evaluation of the role of the Bvg intermediate phase in Bordetella pertussis during experimental respiratory infection. Infect Immun. 2005 Feb; 73(2):748-60.
Vergara-Irigaray N, Chávarri-Martínez A, Rodríguez-Cuesta J, Miller JF, Cotter PA, Martínez de Tejada G. PMID: 15664913; PMCID: PMC547029.
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PubMed Mentions:
18 Fields:
Translation:
HumansAnimalsCells
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CXCR3 and its ligands participate in the host response to Bordetella bronchiseptica infection of the mouse respiratory tract but are not required for clearance of bacteria from the lung. Infect Immun. 2005 Jan; 73(1):485-93.
Widney DP, Hu Y, Foreman-Wykert AK, Bui KC, Nguyen TT, Lu B, Gerard C, Miller JF, Smith JB. PMID: 15618188; PMCID: PMC538932.
View in:
PubMed Mentions:
21 Fields:
Translation:
AnimalsCells
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The Campylobacter jejuni dccRS two-component system is required for optimal in vivo colonization but is dispensable for in vitro growth. Mol Microbiol. 2004 Dec; 54(5):1269-86.
MacKichan JK, Gaynor EC, Chang C, Cawthraw S, Newell DG, Miller JF, Falkow S. PMID: 15554967.
View in:
PubMed Mentions:
29 Fields:
Translation:
AnimalsCells
-
LXR-dependent gene expression is important for macrophage survival and the innate immune response. Cell. 2004 Oct 15; 119(2):299-309.
Joseph SB, Bradley MN, Castrillo A, Bruhn KW, Mak PA, Pei L, Hogenesch J, O'connell RM, Cheng G, Saez E, Miller JF, Tontonoz P. PMID: 15479645.
View in:
PubMed Mentions:
236 Fields:
Translation:
AnimalsCells
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Tropism switching in Bordetella bacteriophage defines a family of diversity-generating retroelements. Nature. 2004 Sep 23; 431(7007):476-81.
Doulatov S, Hodes A, Dai L, Mandhana N, Liu M, Deora R, Simons RW, Zimmerly S, Miller JF. PMID: 15386016.
View in:
PubMed Mentions:
91 Fields:
Translation:
Cells
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Type I interferon production enhances susceptibility to Listeria monocytogenes infection. J Exp Med. 2004 Aug 16; 200(4):437-45.
O'Connell RM, Saha SK, Vaidya SA, Bruhn KW, Miranda GA, Zarnegar B, Perry AK, Nguyen BO, Lane TF, Taniguchi T, Miller JF, Cheng G. PMID: 15302901; PMCID: PMC2211937.
View in:
PubMed Mentions:
263 Fields:
Translation:
AnimalsCells
-
Genomic and genetic analysis of Bordetella bacteriophages encoding reverse transcriptase-mediated tropism-switching cassettes. J Bacteriol. 2004 Mar; 186(5):1503-17.
Liu M, Gingery M, Doulatov SR, Liu Y, Hodes A, Baker S, Davis P, Simmonds M, Churcher C, Mungall K, Quail MA, Preston A, Harvill ET, Maskell DJ, Eiserling FA, Parkhill J, Miller JF. PMID: 14973019; PMCID: PMC344406.
View in:
PubMed Mentions:
38 Fields:
Translation:
AnimalsCells
-
Bacteriophage and the evolution of epidemic cholera. Infect Immun. 2003 Jun; 71(6):2981-2.
Miller JF. PMID: 12761073; PMCID: PMC155710.
View in:
PubMed Mentions:
2 Fields:
Translation:
HumansCells
-
Hypervirulence and pathogen fitness. Trends Microbiol. 2003 Mar; 11(3):105-8.
Foreman-Wykert AK, Miller JF. PMID: 12648937.
View in:
PubMed Mentions:
21 Fields:
Translation:
HumansAnimalsCells
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Bordetella type III secretion induces caspase 1-independent necrosis. Cell Microbiol. 2003 Feb; 5(2):123-32.
Stockbauer KE, Foreman-Wykert AK, Miller JF. PMID: 12580948.
View in:
PubMed Mentions:
30 Fields:
Translation:
HumansAnimalsCells
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Reverse transcriptase-mediated tropism switching in Bordetella bacteriophage. Science. 2002 Mar 15; 295(5562):2091-4.
Liu M, Deora R, Doulatov SR, Gingery M, Eiserling FA, Preston A, Maskell DJ, Simons RW, Cotter PA, Parkhill J, Miller JF. PMID: 11896279.
View in:
PubMed Mentions:
122 Fields:
Translation:
Cells
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Involvement of receptor-interacting protein 2 in innate and adaptive immune responses. Nature. 2002 Mar 14; 416(6877):190-4.
Chin AI, Dempsey PW, Bruhn K, Miller JF, Xu Y, Cheng G. PMID: 11894097.
View in:
PubMed Mentions:
122 Fields:
Translation:
HumansAnimalsCells