Brunilda Balliu

Title(s)Assistant Professor, Pathology and Laboratory Medicine
SchoolMedicine
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Single-cell RNA-seq reveals cell type-specific molecular and genetic associations to lupus. Science. 2022 04 08; 376(6589):eabf1970. Perez RK, Gordon MG, Subramaniam M, Kim MC, Hartoularos GC, Targ S, Sun Y, Ogorodnikov A, Bueno R, Lu A, Thompson M, Rappoport N, Dahl A, Lanata CM, Matloubian M, Maliskova L, Kwek SS, Li T, Slyper M, Waldman J, Dionne D, Rozenblatt-Rosen O, Fong L, Dall'Era M, Balliu B, Regev A, Yazdany J, Criswell LA, Zaitlen N, Ye CJ. PMID: 35389781; PMCID: PMC9297655.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    2. Integration of genetic colocalizations with physiological and pharmacological perturbations identifies cardiometabolic disease genes. Genome Med. 2022 03 15; 14(1):31. Gloudemans MJ, Balliu B, Nachun D, Schnurr TM, Durrant MG, Ingelsson E, Wabitsch M, Quertermous T, Montgomery SB, Knowles JW, Carcamo-Orive I. PMID: 35292083; PMCID: PMC8925074.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    3. Evaluating supervised and unsupervised background noise correction in human gut microbiome data. PLoS Comput Biol. 2022 02; 18(2):e1009838. Briscoe L, Balliu B, Sankararaman S, Halperin E, Garud NR. PMID: 35130266; PMCID: PMC8853548.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    4. An integrated approach to identify environmental modulators of genetic risk factors for complex traits. Am J Hum Genet. 2021 10 07; 108(10):1866-1879. Balliu B, Carcamo-Orive I, Gloudemans MJ, Nachun DC, Durrant MG, Gazal S, Park CY, Knowles DA, Wabitsch M, Quertermous T, Knowles JW, Montgomery SB. PMID: 34582792; PMCID: PMC8546041.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    5. Technology dictates algorithms: recent developments in read alignment. Genome Biol. 2021 08 26; 22(1):249. Alser M, Rotman J, Deshpande D, Taraszka K, Shi H, Baykal PI, Yang HT, Xue V, Knyazev S, Singer BD, Balliu B, Koslicki D, Skums P, Zelikovsky A, Alkan C, Mutlu O, Mangul S. PMID: 34446078; PMCID: PMC8390189.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    6. Association of image-defined risk factors with clinical features, histopathology, and outcomes in neuroblastoma. Cancer Med. 2021 04; 10(7):2232-2241. Temple WC, Vo KT, Matthay KK, Balliu B, Coleman C, Michlitsch J, Phelps A, Behr S, Zapala MA. PMID: 33314708; PMCID: PMC7982630.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    7. A machine learning algorithm to increase COVID-19 inpatient diagnostic capacity. PLoS One. 2020; 15(9):e0239474. Goodman-Meza D, Rudas A, Chiang JN, Adamson PC, Ebinger J, Sun N, Botting P, Fulcher JA, Saab FG, Brook R, Eskin E, An U, Kordi M, Jew B, Balliu B, Chen Z, Hill BL, Rahmani E, Halperin E, Manuel V. PMID: 32960917; PMCID: PMC7508387.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansCellsPHPublic Health
    8. The impact of sex on gene expression across human tissues. Science. 2020 09 11; 369(6509). Oliva M, Muñoz-Aguirre M, Kim-Hellmuth S, Wucher V, Gewirtz ADH, Cotter DJ, Parsana P, Kasela S, Balliu B, Viñuela A, Castel SE, Mohammadi P, Aguet F, Zou Y, Khramtsova EA, Skol AD, Garrido-Martín D, Reverter F, Brown A, Evans P, Gamazon ER, Payne A, Bonazzola R, Barbeira AN, Hamel AR, Martinez-Perez A, Soria JM, GTEx Consortium, Pierce BL, Stephens M, Eskin E, Dermitzakis ET, Segrè AV, Im HK, Engelhardt BE, Ardlie KG, Montgomery SB, Battle AJ, Lappalainen T, Guigó R, Stranger BE. PMID: 32913072; PMCID: PMC8136152.
      View in: PubMed   Mentions: 70     Fields:    Translation:HumansCells
    9. Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx. Genome Biol. 2020 09 11; 21(1):233. Gay NR, Gloudemans M, Antonio ML, Abell NS, Balliu B, Park Y, Martin AR, Musharoff S, Rao AS, Aguet F, Barbeira AN, Bonazzola R, Hormozdiari F, GTEx Consortium, Ardlie KG, Brown CD, Im HK, Lappalainen T, Wen X, Montgomery SB. PMID: 32912333; PMCID: PMC7488497.
      View in: PubMed   Mentions: 16     Fields:    Translation:Humans
    10. Molecular Choreography of Acute Exercise. Cell. 2020 05 28; 181(5):1112-1130.e16. Contrepois K, Wu S, Moneghetti KJ, Hornburg D, Ahadi S, Tsai MS, Metwally AA, Wei E, Lee-McMullen B, Quijada JV, Chen S, Christle JW, Ellenberger M, Balliu B, Taylor S, Durrant MG, Knowles DA, Choudhry H, Ashland M, Bahmani A, Enslen B, Amsallem M, Kobayashi Y, Avina M, Perelman D, Schüssler-Fiorenza Rose SM, Zhou W, Ashley EA, Montgomery SB, Chaib H, Haddad F, Snyder MP. PMID: 32470399; PMCID: PMC7299174.
      View in: PubMed   Mentions: 67     Fields:    Translation:HumansCells
    11. Genetic regulation of gene expression and splicing during a 10-year period of human aging. Genome Biol. 2019 11 04; 20(1):230. Balliu B, Durrant M, Goede O, Abell N, Li X, Liu B, Gloudemans MJ, Cook NL, Smith KS, Knowles DA, Pala M, Cucca F, Schlessinger D, Jaiswal S, Sabatti C, Lind L, Ingelsson E, Montgomery SB. PMID: 31684996; PMCID: PMC6827221.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    12. Identification of rare-disease genes using blood transcriptome sequencing and large control cohorts. Nat Med. 2019 06; 25(6):911-919. Frésard L, Smail C, Ferraro NM, Teran NA, Li X, Smith KS, Bonner D, Kernohan KD, Marwaha S, Zappala Z, Balliu B, Davis JR, Liu B, Prybol CJ, Kohler JN, Zastrow DB, Reuter CM, Fisk DG, Grove ME, Davidson JM, Hartley T, Joshi R, Strober BJ, Utiramerur S, Undiagnosed Diseases Network, Care4Rare Canada Consortium, Lind L, Ingelsson E, Battle A, Bejerano G, Bernstein JA, Ashley EA, Boycott KM, Merker JD, Wheeler MT, Montgomery SB. PMID: 31160820; PMCID: PMC6634302.
      View in: PubMed   Mentions: 73     Fields:    Translation:HumansCells
    13. Genetic analyses of human fetal retinal pigment epithelium gene expression suggest ocular disease mechanisms. Commun Biol. 2019; 2:186. Liu B, Calton MA, Abell NS, Benchorin G, Gloudemans MJ, Chen M, Hu J, Li X, Balliu B, Bok D, Montgomery SB, Vollrath D. PMID: 31123710; PMCID: PMC6527609.
      View in: PubMed   Mentions: 7  Translation:HumansCells
    14. Powerful testing via hierarchical linkage disequilibrium in haplotype association studies. Biom J. 2019 05; 61(3):747-768. Balliu B, Houwing-Duistermaat JJ, Böhringer S. PMID: 30693553; PMCID: PMC6637384.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    15. Distinctive facial features in idiopathic Moyamoya disease in Caucasians: a first systematic analysis. PeerJ. 2018; 6:e4740. Kraemer M, Huynh QB, Wieczorek D, Balliu B, Mikat B, Boehringer S. PMID: 29977664; PMCID: PMC6029584.
      View in: PubMed   Mentions: 4  
    16. Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology. Nat Genet. 2017 Dec; 49(12):1752-1757. Ferreira MA, Vonk JM, Baurecht H, Marenholz I, Tian C, Hoffman JD, Helmer Q, Tillander A, Ullemar V, van Dongen J, Lu Y, Rüschendorf F, Esparza-Gordillo J, Medway CW, Mountjoy E, Burrows K, Hummel O, Grosche S, Brumpton BM, Witte JS, Hottenga JJ, Willemsen G, Zheng J, Rodríguez E, Hotze M, Franke A, Revez JA, Beesley J, Matheson MC, Dharmage SC, Bain LM, Fritsche LG, Gabrielsen ME, Balliu B, 23andMe Research Team, AAGC collaborators, BIOS consortium, LifeLines Cohort Study, Nielsen JB, Zhou W, Hveem K, Langhammer A, Holmen OL, Løset M, Abecasis GR, Willer CJ, Arnold A, Homuth G, Schmidt CO, Thompson PJ, Martin NG, Duffy DL, Novak N, Schulz H, Karrasch S, Gieger C, Strauch K, Melles RB, Hinds DA, Hübner N, Weidinger S, Magnusson PKE, Jansen R, Jorgenson E, Lee YA, Boomsma DI, Almqvist C, Karlsson R, Koppelman GH, Paternoster L. PMID: 29083406; PMCID: PMC5989923.
      View in: PubMed   Mentions: 141     Fields:    Translation:Humans
    17. Gene coexpression network analysis for family studies based on a meta-analytic approach. BMC Proc. 2016; 10(Suppl 7):119-123. Tissier R, Uh HW, van den Akker E, Balliu B, Tsonaka S, Houwing-Duistermaat J. PMID: 27980622; PMCID: PMC5133496.
      View in: PubMed   Mentions: 1  
    18. Impact of the X Chromosome and sex on regulatory variation. Genome Res. 2016 06; 26(6):768-77. Kukurba KR, Parsana P, Balliu B, Smith KS, Zappala Z, Knowles DA, Favé MJ, Davis JR, Li X, Zhu X, Potash JB, Weissman MM, Shi J, Kundaje A, Levinson DF, Awadalla P, Mostafavi S, Battle A, Montgomery SB. PMID: 27197214; PMCID: PMC4889977.
      View in: PubMed   Mentions: 42     Fields:    Translation:HumansCells
    19. A Novel Test for Detecting SNP-SNP Interactions in Case-Only Trio Studies. Genetics. 2016 Apr; 202(4):1289-97. Balliu B, Zaitlen N. PMID: 26865367; PMCID: PMC4905548.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    20. A retrospective likelihood approach for efficient integration of multiple omics factors in case-control association studies. Genet Epidemiol. 2015 Mar; 39(3):156-65. Balliu B, Tsonaka R, Boehringer S, Houwing-Duistermaat J. PMID: 25620726.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    21. Classification and visualization based on derived image features: application to genetic syndromes. PLoS One. 2014; 9(11):e109033. Balliu B, Würtz RP, Horsthemke B, Wieczorek D, Böhringer S. PMID: 25405460; PMCID: PMC4236018.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    22. Testing genetic association with rare and common variants in family data. Genet Epidemiol. 2014 Sep; 38 Suppl 1:S37-43. Chen H, Malzahn D, Balliu B, Li C, Bailey JN. PMID: 25112186; PMCID: PMC4324976.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    23. Combining information from linkage and association mapping for next-generation sequencing longitudinal family data. BMC Proc. 2014; 8(Suppl 1 Genetic Analysis Workshop 18Vanessa Olmo):S34. Balliu B, Uh HW, Tsonaka R, Boehringer S, Helmer Q, Houwing-Duistermaat JJ. PMID: 25519382; PMCID: PMC4143620.
      View in: PubMed   Mentions: 2  
    24. CHEK2*1100delC homozygosity in the Netherlands--prevalence and risk of breast and lung cancer. Eur J Hum Genet. 2014 Jan; 22(1):46-51. Huijts PE, Hollestelle A, Balliu B, Houwing-Duistermaat JJ, Meijers CM, Blom JC, Ozturk B, Krol-Warmerdam EM, Wijnen J, Berns EM, Martens JW, Seynaeve C, Kiemeney LA, van der Heijden HF, Tollenaar RA, Devilee P, van Asperen CJ. PMID: 23652375; PMCID: PMC3865411.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    25. Combining family and twin data in association studies to estimate the noninherited maternal antigens effect. Genet Epidemiol. 2012 Dec; 36(8):811-9. Balliu B, Tsonaka R, van der Woude D, Boehringer S, Houwing-Duistermaat JJ. PMID: 22851506.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
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