Daniel Jacob Tward

Title(s)Assistant Professor, Computational Medicine
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    Title(s)Assistant Professor, Neurology

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    1. A Majorization-Minimization Algorithm for Neuroimage Registration. SIAM J Imaging Sci. 2024; 17(1):273-300. Zhou G, Tward D, Lange K. PMID: 38550750; PMCID: PMC10977051.
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    2. The molecular cytoarchitecture of the adult mouse brain. Nature. 2023 Dec; 624(7991):333-342. Langlieb J, Sachdev NS, Balderrama KS, Nadaf NM, Raj M, Murray E, Webber JT, Vanderburg C, Gazestani V, Tward D, Mezias C, Li X, Flowers K, Cable DM, Norton T, Mitra P, Chen F, Macosko EZ. PMID: 38092915; PMCID: PMC10719111.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    3. STalign: Alignment of spatial transcriptomics data using diffeomorphic metric mapping. Nat Commun. 2023 Dec 08; 14(1):8123. Clifton K, Anant M, Aihara G, Atta L, Aimiuwu OK, Kebschull JM, Miller MI, Tward D, Fan J. PMID: 38065970; PMCID: PMC10709594.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    4. Preserving Derivative Information while Transforming Neuronal Curves. Neuroinformatics. 2024 Jan; 22(1):63-74. Athey TL, Tward DJ, Mueller U, Younes L, Vogelstein JT, Miller MI. PMID: 38036915; PMCID: PMC10917852.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    5. Alignment of spatial transcriptomics data using diffeomorphic metric mapping. bioRxiv. 2023 Aug 19. Clifton K, Anant M, Aihara G, Atta L, Aimiuwu OK, Kebschull JM, Miller MI, Tward D, Fan J. PMID: 37090640; PMCID: PMC10120659.
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    6. Preserving Derivative Information while Transforming Neuronal Curves. ArXiv. 2023 Aug 01. Athey TL, Tward DJ, Mueller U, Younes L, Vogelstein JT, Miller MI. PMID: 36994162; PMCID: PMC10055472.
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    7. Disease risk and healthcare utilization among ancestrally diverse groups in the Los Angeles region. Nat Med. 2023 07; 29(7):1845-1856. Caggiano C, Boudaie A, Shemirani R, Mefford J, Petter E, Chiu A, Ercelen D, He R, Tward D, Paul KC, Chang TS, Pasaniuc B, Kenny EE, Shortt JA, Gignoux CR, Balliu B, Arboleda VA, Belbin G, Zaitlen N. PMID: 37464048.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    8. A guide to the BRAIN Initiative Cell Census Network data ecosystem. PLoS Biol. 2023 Jun; 21(6):e3002133. Hawrylycz M, Martone ME, Ascoli GA, Bjaalie JG, Dong HW, Ghosh SS, Gillis J, Hertzano R, Haynor DR, Hof PR, Kim Y, Lein E, Liu Y, Miller JA, Mitra PP, Mukamel E, Ng L, Osumi-Sutherland D, Peng H, Ray PL, Sanchez R, Regev A, Ropelewski A, Scheuermann RH, Tan SZK, Thompson CL, Tickle T, Tilgner H, Varghese M, Wester B, White O, Zeng H, Aevermann B, Allemang D, Ament S, Athey TL, Baker C, Baker KS, Baker PM, Bandrowski A, Banerjee S, Bishwakarma P, Carr A, Chen M, Choudhury R, Cool J, Creasy H, D'Orazi F, Degatano K, Dichter B, Ding SL, Dolbeare T, Ecker JR, Fang R, Fillion-Robin JC, Fliss TP, Gee J, Gillespie T, Gouwens N, Zhang GQ, Halchenko YO, Harris NL, Herb BR, Hintiryan H, Hood G, Horvath S, Huo B, Jarecka D, Jiang S, Khajouei F, Kiernan EA, Kir H, Kruse L, Lee C, Lelieveldt B, Li Y, Liu H, Liu L, Markuhar A, Mathews J, Mathews KL, Mezias C, Miller MI, Mollenkopf T, Mufti S, Mungall CJ, Orvis J, Puchades MA, Qu L, Receveur JP, Ren B, Sjoquist N, Staats B, Tward D, van Velthoven CTJ, Wang Q, Xie F, Xu H, Yao Z, Yun Z, Zhang YR, Zheng WJ, Zingg B. PMID: 37390046; PMCID: PMC10313015.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    9. Applying Joint Graph Embedding to Study Alzheimer's Neurodegeneration Patterns in Volumetric Data. Neuroinformatics. 2023 07; 21(3):601-614. He R, Tward D, Alzheimer’s Disease Neuroimaging Initiative. PMID: 37314682; PMCID: PMC10406695.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    10. Preserving Derivative Information while Transforming Neuronal Curves. Res Sq. 2023 Mar 31. Athey TL, Tward DJ, Mueller U, Younes L, Vogelstein JT, Miller MI. PMID: 37034653; PMCID: PMC10081353.
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    11. Early amygdala and ERC atrophy linked to 3D reconstruction of rostral neurofibrillary tau tangle pathology in Alzheimer's disease. Neuroimage Clin. 2023; 38:103374. Stouffer KM, Chen C, Kulason S, Xu E, Witter MP, Ceritoglu C, Albert MS, Mori S, Troncoso J, Tward DJ, Miller MI, Alzheimer’s Disease Neuroimaging Initiative. PMID: 36934675; PMCID: PMC10034129.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    12. The cell type composition of the adult mouse brain revealed by single cell and spatial genomics. bioRxiv. 2023 Mar 13. Langlieb J, Sachdev NS, Balderrama KS, Nadaf NM, Raj M, Murray E, Webber JT, Vanderburg C, Gazestani V, Tward D, Mezias C, Li X, Cable DM, Norton T, Mitra P, Chen F, Macosko EZ. PMID: 36945580; PMCID: PMC10028805.
      View in: PubMed   Mentions: 1  
    13. Applying joint graph embedding to study Alzheimer's neurodegeneration patterns in volumetric data. bioRxiv. 2023 Jan 30. He R, Tward D, Alzheimer’s Disease Neuroimaging Initiative. PMID: 36712104; PMCID: PMC9882116.
      View in: PubMed   Mentions:
    14. Projective Diffeomorphic Mapping of Molecular Digital Pathology with Tissue MRI. Commun Eng. 2022; 1. Stouffer KM, Witter MP, Tward DJ, Miller MI. PMID: 37284027; PMCID: PMC10243734.
      View in: PubMed   Mentions: 3  
    15. Molecular Computational Anatomy: Unifying the Particle to Tissue Continuum via Measure Representations of the Brain. BME Front. 2022; 2022. Miller M, Tward D, Trouvé A. PMID: 37206893; PMCID: PMC10193958.
      View in: PubMed   Mentions: 3  
    16. Machine learning approach for obstructive sleep apnea screening using brain diffusion tensor imaging. J Sleep Res. 2023 02; 32(1):e13729. Pang B, Doshi S, Roy B, Lai M, Ehlert L, Aysola RS, Kang DW, Anderson A, Joshi SH, Tward D, Scalzo F, Vacas S, Kumar R. PMID: 36223645; PMCID: PMC9851969.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    17. Hidden Markov modeling for maximum probability neuron reconstruction. Commun Biol. 2022 04 25; 5(1):388. Athey TL, Tward DJ, Mueller U, Vogelstein JT, Miller MI. PMID: 35468989; PMCID: PMC9038756.
      View in: PubMed   Mentions: 2  Translation:AnimalsCells
    18. Visualization of Speech Perception Analysis via Phoneme Alignment: A Pilot Study. Front Neurol. 2021; 12:724800. Ratnanather JT, Wang LC, Bae SH, O'Neill ER, Sagi E, Tward DJ. PMID: 35087462; PMCID: PMC8787339.
      View in: PubMed   Mentions: 2  
    19. From Picoscale Pathology to Decascale Disease: Image Registration with a Scattering Transform and Varifolds for Manipulating Multiscale Data. Multimodal Learn Clin Decis Support (2021). 2021 Oct; 13050:1-11. Stouffer KM, Wang Z, Xu E, Lee K, Lee P, Miller MI, Tward DJ. PMID: 36283001; PMCID: PMC9582035.
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    20. Visualizing synaptic plasticity in vivo by large-scale imaging of endogenous AMPA receptors. Elife. 2021 10 18; 10. Graves AR, Roth RH, Tan HL, Zhu Q, Bygrave AM, Lopez-Ortega E, Hong I, Spiegel AC, Johnson RC, Vogelstein JT, Tward DJ, Miller MI, Huganir RL. PMID: 34658338; PMCID: PMC8616579.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    21. An optical flow based left-invariant metric for natural gradient descent in affine image registration. Front Appl Math Stat. 2021; 7. Tward D. PMID: 37786411; PMCID: PMC10544850.
      View in: PubMed   Mentions: 3  
    22. Fitting Splines to Axonal Arbors Quantifies Relationship Between Branch Order and Geometry. Front Neuroinform. 2021; 15:704627. Athey TL, Teneggi J, Vogelstein JT, Tward DJ, Mueller U, Miller MI. PMID: 34456702; PMCID: PMC8385655.
      View in: PubMed   Mentions: 3  
    23. CloudReg: automatic terabyte-scale cross-modal brain volume registration. Nat Methods. 2021 08; 18(8):845-846. Chandrashekhar V, Tward DJ, Crowley D, Crow AK, Wright MA, Hsueh BY, Gore F, Machado TA, Branch A, Rosenblum JS, Deisseroth K, Vogelstein JT. PMID: 34253927; PMCID: PMC8494106.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansAnimals
    24. Corrigendum to "Robust Diffeomorphic Mapping via Geodesically Controlled Active Shapes". Int J Biomed Imaging. 2021; 2021:9780202. Tward DJ, Ma J, Miller MI, Younes L. PMID: 34135947; PMCID: PMC8179761.
      View in: PubMed   Mentions:
    25. A 7 Tesla Amygdalar-Hippocampal Shape Analysis of Lithium Response in Bipolar Disorder. Front Psychiatry. 2021; 12:614010. Athey TL, Ceritoglu C, Tward DJ, Kutten KS, DePaulo JR, Glazer K, Goes FS, Kelsoe JR, Mondimore F, Nievergelt CM, Rootes-Murdy K, Zandi PP, Ratnanather JT, Mahon PB. PMID: 33664682; PMCID: PMC7920967.
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    26. Entorhinal and Transentorhinal Atrophy in Preclinical Alzheimer's Disease. Front Neurosci. 2020; 14:804. Kulason S, Xu E, Tward DJ, Bakker A, Albert M, Younes L, Miller MI. PMID: 32973425; PMCID: PMC7472871.
      View in: PubMed   Mentions: 14  
    27. Vestibular function and cortical and sub-cortical alterations in an aging population. Heliyon. 2020 Aug; 6(8):e04728. Jacob A, Tward DJ, Resnick S, Smith PF, Lopez C, Rebello E, Wei EX, Ratnanather JT, Agrawal Y. PMID: 32904672; PMCID: PMC7457317.
      View in: PubMed   Mentions: 7  
    28. Toward Community-Driven Big Open Brain Science: Open Big Data and Tools for Structure, Function, and Genetics. Annu Rev Neurosci. 2020 07 08; 43:441-464. Charles AS, Falk B, Turner N, Pereira TD, Tward D, Pedigo BD, Chung J, Burns R, Ghosh SS, Kebschull JM, Silversmith W, Vogelstein JT. PMID: 32283996; PMCID: PMC9119703.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimals
    29. Diffeomorphic Registration With Intensity Transformation and Missing Data: Application to 3D Digital Pathology of Alzheimer's Disease. Front Neurosci. 2020; 14:52. Tward D, Brown T, Kageyama Y, Patel J, Hou Z, Mori S, Albert M, Troncoso J, Miller M. PMID: 32116503; PMCID: PMC7027169.
      View in: PubMed   Mentions: 16  
    30. Diffeomorphic Upsampling of Serially Acquired Sparse 2D Cross-Sections in Cardiac MRI. Annu Int Conf IEEE Eng Med Biol Soc. 2019 Jul; 2019:4491-4495. Lee BC, Tward DJ, Wei J, Tipre D, Weiss RG, Miller MI, Ardekani S. PMID: 31946863; PMCID: PMC7191634.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    31. On variational solutions for whole brain serial-section histology using a Sobolev prior in the computational anatomy random orbit model. PLoS Comput Biol. 2018 12; 14(12):e1006610. Lee BC, Tward DJ, Mitra PP, Miller MI. PMID: 30586384; PMCID: PMC6324828.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansAnimals
    32. Cortical thickness atrophy in the transentorhinal cortex in mild cognitive impairment. Neuroimage Clin. 2019; 21:101617. Kulason S, Tward DJ, Brown T, Sicat CS, Liu CF, Ratnanather JT, Younes L, Bakker A, Gallagher M, Albert M, Miller MI, Alzheimer's Disease Neuroimaging Initiative. PMID: 30552075; PMCID: PMC6412863.
      View in: PubMed   Mentions: 21     Fields:    Translation:Humans
      View in: PubMed   Mentions: 2  
    34. A community-developed open-source computational ecosystem for big neuro data. Nat Methods. 2018 11; 15(11):846-847. Vogelstein JT, Perlman E, Falk B, Baden A, Gray Roncal W, Chandrashekhar V, Collman F, Seshamani S, Patsolic JL, Lillaney K, Kazhdan M, Hider R, Pryor D, Matelsky J, Gion T, Manavalan P, Wester B, Chevillet M, Trautman ET, Khairy K, Bridgeford E, Kleissas DM, Tward DJ, Crow AK, Hsueh B, Wright MA, Miller MI, Smith SJ, Vogelstein RJ, Deisseroth K, Burns R. PMID: 30377345; PMCID: PMC6481161.
      View in: PubMed   Mentions: 24     Fields:    Translation:Humans
    35. Computational anatomy and diffeomorphometry: A dynamical systems model of neuroanatomy in the soft condensed matter continuum. Wiley Interdiscip Rev Syst Biol Med. 2018 11; 10(6):e1425. Miller MI, Arguillère S, Tward DJ, Younes L. PMID: 29862670; PMCID: PMC6195456.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    36. On the Complexity of Human Neuroanatomy at the Millimeter Morphome Scale: Developing Codes and Characterizing Entropy Indexed to Spatial Scale. Front Neurosci. 2017; 11:577. Tward DJ, Miller MI. PMID: 29093658; PMCID: PMC5651257.
      View in: PubMed   Mentions: 1  
    37. Entorhinal and transentorhinal atrophy in mild cognitive impairment using longitudinal diffeomorphometry. Alzheimers Dement (Amst). 2017; 9:41-50. Tward DJ, Sicat CS, Brown T, Bakker A, Gallagher M, Albert M, Miller M. PMID: 28971142; PMCID: PMC5608074.
      View in: PubMed   Mentions: 14  
    38. Parametric Surface Diffeomorphometry for Low Dimensional Embeddings of Dense Segmentations and Imagery. IEEE Trans Pattern Anal Mach Intell. 2017 06; 39(6):1195-1208. Tward D, Miller M, Trouve A, Younes L. PMID: 27295651; PMCID: PMC5663205.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    39. Linking white matter and deep gray matter alterations in premanifest Huntington disease. Neuroimage Clin. 2016; 11:450-460. Faria AV, Ratnanather JT, Tward DJ, Lee DS, van den Noort F, Wu D, Brown T, Johnson H, Paulsen JS, Ross CA, Younes L, Miller MI, PREDICT-HD Investigators and Coordinators of the Huntington Study Group. PMID: 27104139; PMCID: PMC4827723.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansCells
    40. The development of a population of 4D pediatric XCAT phantoms for imaging research and optimization. Med Phys. 2015 Aug; 42(8):4719-26. Segars WP, Norris H, Sturgeon GM, Zhang Y, Bond J, Minhas A, Tward DJ, Ratnanather JT, Miller MI, Frush D, Samei E. PMID: 26233199; PMCID: PMC4506297.
      View in: PubMed   Mentions: 26     Fields:    Translation:Humans
    41. Network Neurodegeneration in Alzheimer's Disease via MRI Based Shape Diffeomorphometry and High-Field Atlasing. Front Bioeng Biotechnol. 2015; 3:54. Miller MI, Ratnanather JT, Tward DJ, Brown T, Lee DS, Ketcha M, Mori K, Wang MC, Mori S, Albert MS, Younes L, BIOCARD Research Team. PMID: 26284236; PMCID: PMC4515983.
      View in: PubMed   Mentions: 22  
    42. Morphometry of the amygdala in schizophrenia and psychotic bipolar disorder. Schizophr Res. 2015 May; 164(1-3):199-202. Mahon PB, Lee DS, Trinh H, Tward D, Miller MI, Younes L, Barta PE, Ratnanather JT. PMID: 25766598; PMCID: PMC4439197.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    43. Amygdalar atrophy in symptomatic Alzheimer's disease based on diffeomorphometry: the BIOCARD cohort. Neurobiol Aging. 2015 Jan; 36 Suppl 1:S3-S10. Miller MI, Younes L, Ratnanather JT, Brown T, Trinh H, Lee DS, Tward D, Mahon PB, Mori S, Albert M, BIOCARD Research Team. PMID: 25444602; PMCID: PMC4271320.
      View in: PubMed   Mentions: 33     Fields:    Translation:Humans
    44. A set of 4D pediatric XCAT reference phantoms for multimodality research. Med Phys. 2014 Mar; 41(3):033701. Norris H, Zhang Y, Bond J, Sturgeon GM, Minhas A, Tward DJ, Ratnanather JT, Miller MI, Frush D, Samei E, Segars WP. PMID: 24593745; PMCID: PMC3987726.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    45. Robust Diffeomorphic Mapping via Geodesically Controlled Active Shapes. Int J Biomed Imaging. 2013; 2013:205494. Tward DJ, Ma J, Miller MI, Younes L. PMID: 23690757; PMCID: PMC3638714.
      View in: PubMed   Mentions: 9  
    46. Population of anatomically variable 4D XCAT adult phantoms for imaging research and optimization. Med Phys. 2013 Apr; 40(4):043701. Segars WP, Bond J, Frush J, Hon S, Eckersley C, Williams CH, Feng J, Tward DJ, Ratnanather JT, Miller MI, Frush D, Samei E. PMID: 23556927; PMCID: PMC3612121.
      View in: PubMed   Mentions: 78     Fields:    Translation:Humans
    47. Effects of protocol and obesity on dose conversion factors in adult body CT. Med Phys. 2012 Nov; 39(11):6550-71. Li X, Samei E, Williams CH, Segars WP, Tward DJ, Miller MI, Ratnanather JT, Paulson EK, Frush DP. PMID: 23127050; PMCID: PMC3482255.
      View in: PubMed   Mentions: 21     Fields:    Translation:Humans
    48. Beyond noise power in 3D computed tomography: the local NPS and off-diagonal elements of the Fourier domain covariance matrix. Med Phys. 2012 Jun; 39(6):3240-52. Pineda AR, Tward DJ, Gonzalez A, Siewerdsen JH. PMID: 22755707; PMCID: PMC3365918.
      View in: PubMed   Mentions: 17     Fields:    
    49. Patient Specific Dosimetry Phantoms Using Multichannel LDDMM of the Whole Body. Int J Biomed Imaging. 2011; 2011:481064. Tward DJ, Ceritoglu C, Kolasny A, Sturgeon GM, Segars WP, Miller MI, Ratnanather JT. PMID: 21960989; PMCID: PMC3180076.
      View in: PubMed   Mentions: 9  
    50. Analysis of Fourier-domain task-based detectability index in tomosynthesis and cone-beam CT in relation to human observer performance. Med Phys. 2011 Apr; 38(4):1754-68. Gang GJ, Lee J, Stayman JW, Tward DJ, Zbijewski W, Prince JL, Siewerdsen JH. PMID: 21626910; PMCID: PMC3069989.
      View in: PubMed   Mentions: 53     Fields:    
    51. Anatomical background and generalized detectability in tomosynthesis and cone-beam CT. Med Phys. 2010 May; 37(5):1948-65. Gang GJ, Tward DJ, Lee J, Siewerdsen JH. PMID: 20527529; PMCID: PMC2862054.
      View in: PubMed   Mentions: 39     Fields:    Translation:Humans
    52. The Generalized NEQ and Detectability Index for Tomosynthesis and Cone-Beam CT: From Cascaded Systems Analysis to Human Observers. Proc SPIE Int Soc Opt Eng. 2010 Mar 22; 7622. Gang GJ, Lee J, Stayman JW, Tward DJ, Zbijewski W, Prince JL, Siewerdsen JH. PMID: 24307930; PMCID: PMC3845534.
      View in: PubMed   Mentions: 5  
    53. Noise aliasing and the 3D NEQ of flat-panel cone-beam CT: effect of 2D/3D apertures and sampling. Med Phys. 2009 Aug; 36(8):3830-43. Tward DJ, Siewerdsen JH. PMID: 19746816; PMCID: PMC2755461.
      View in: PubMed   Mentions: 18     Fields:    Translation:Humans
    54. Cascaded systems analysis of the 3D noise transfer characteristics of flat-panel cone-beam CT. Med Phys. 2008 Dec; 35(12):5510-29. Tward DJ, Siewerdsen JH. PMID: 19175110; PMCID: PMC2673616.
      View in: PubMed   Mentions: 52     Fields:    Translation:Humans
    55. Soft-tissue detectability in cone-beam CT: evaluation by 2AFC tests in relation to physical performance metrics. Med Phys. 2007 Nov; 34(11):4459-71. Tward DJ, Siewerdsen JH, Daly MJ, Richard S, Moseley DJ, Jaffray DA, Paul NS. PMID: 18072510.
      View in: PubMed   Mentions: 13     Fields:    Translation:Humans
    56. Optimal kvp selection for dual-energy imaging of the chest: evaluation by task-specific observer preference tests. Med Phys. 2007 Oct; 34(10):3916-25. Williams DB, Siewerdsen JH, Tward DJ, Paul NS, Dhanantwari AC, Shkumat NA, Richard S, Yorkston J, Van Metter R. PMID: 17985637.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
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