Nandita Garud

Title(s)Associate Professor, Ecology And Evolutionary Biology
SchoolCollege of Letters and Science
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    Title(s)Associate Professor, Human Genetics


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    Cornell University, Ithaca, NYB.S.2008Biology; Biometry and Statistics
    Stanford University, Stanford, CAM.S.2012Statistics
    Stanford University, Stanford, CAPhD2015Genetics

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    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Enrichment of hard sweeps on the X chromosome compared to autosomes in six Drosophila species. Genetics. 2024 04 03; 226(4). Harris M, Kim BY, Garud N. PMID: 38366786; PMCID: PMC10990427.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    2. Pervasive selective sweeps across human gut microbiomes. bioRxiv. 2023 Dec 23. Wolff R, Garud NR. PMID: 38187688; PMCID: PMC10769429.
      View in: PubMed   Mentions:
    3. Enrichment of hard sweeps on the X chromosome compared to autosomes in six Drosophila species. bioRxiv. 2023 Dec 07. Harris M, Kim B, Garud N. PMID: 38106201; PMCID: PMC10723260.
      View in: PubMed   Mentions:
    4. Inference of the demographic histories and selective effects of human gut commensal microbiota over the course of human history. bioRxiv. 2023 Nov 13. Mah JC, Lohmueller KE, Garud N. PMID: 38014007; PMCID: PMC10680615.
      View in: PubMed   Mentions:
    5. Specific Oral Microbial Differences in Proteobacteria and Bacteroidetes Are Associated with Distinct Sites When Moving from Healthy Mucosa to Oral Dysplasia-A Microbiome and Gene Profiling Study and Focused Review. Microorganisms. 2023 Sep 07; 11(9). Radaic A, Shamir ER, Jones K, Villa A, Garud NR, Tward AD, Kamarajan P, Kapila YL. PMID: 37764094; PMCID: PMC10534919.
      View in: PubMed   Mentions: 2  
    6. Understanding soft sweeps: a signature of rapid adaptation. Nat Rev Genet. 2023 Jul; 24(7):420. Garud NR. PMID: 36801929; PMCID: PMC9936460.
      View in: PubMed   Mentions:    Fields:    
    7. SNV-FEAST: microbial source tracking with single nucleotide variants. Genome Biol. 2023 04 30; 24(1):101. Briscoe L, Halperin E, Garud NR. PMID: 37121994; PMCID: PMC10150486.
      View in: PubMed   Mentions:    Fields:    
    8. Understanding natural selection in Holocene Europe using multi-locus genotype identity scans. bioRxiv. 2023 Apr 25. Pandey D, Harris M, Garud NR, Narasimhan VM. PMID: 37163039; PMCID: PMC10168228.
      View in: PubMed   Mentions:
    9. Ecological Stability Emerges at the Level of Strains in the Human Gut Microbiome. mBio. 2023 04 25; 14(2):e0250222. Wolff R, Shoemaker W, Garud N. PMID: 36809109; PMCID: PMC10127601.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    10. Community diversity is associated with intra-species genetic diversity and gene loss in the human gut microbiome. Elife. 2023 02 09; 12. Madi N, Chen D, Wolff R, Shapiro BJ, Garud NR. PMID: 36757364; PMCID: PMC9977275.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    11. Enrichment of Hard Sweeps on the X Chromosome in Drosophila melanogaster. Mol Biol Evol. 2023 01 04; 40(1). Harris M, Garud NR. PMID: 36546413; PMCID: PMC9825254.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    12. Rapid evolution and strain turnover in the infant gut microbiome. Genome Res. 2022 06; 32(6):1124-1136. Chen DW, Garud NR. PMID: 35545448; PMCID: PMC9248880.
      View in: PubMed   Mentions: 16     Fields:    Translation:Humans
    13. Microbial Evolution: An overlooked biomarker of host diet. Cell Host Microbe. 2022 02 09; 30(2):146-147. Garud N. PMID: 35143765.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    14. Evaluating supervised and unsupervised background noise correction in human gut microbiome data. PLoS Comput Biol. 2022 02; 18(2):e1009838. Briscoe L, Balliu B, Sankararaman S, Halperin E, Garud NR. PMID: 35130266; PMCID: PMC8853548.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    15. Comparative Population Genetics in the Human Gut Microbiome. Genome Biol Evol. 2022 01 04; 14(1). Shoemaker WR, Chen D, Garud NR. PMID: 34028530; PMCID: PMC8743038.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansCells
    16. The effect of gastric acid suppression on probiotic colonization in a double blinded randomized clinical trial. Clin Nutr ESPEN. 2022 02; 47:70-77. Singh G, Haileselassie Y, Briscoe L, Bai L, Patel A, Sanjines E, Hendler S, Singh PK, Garud NR, Limketkai BN, Habtezion A. PMID: 35063245.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    17. The Tempo and Mode of Adaptation in a Complex Natural Population: the Microbiome. mSystems. 2021 Aug 31; 6(4):e0077921. Garud N. PMID: 34427524; PMCID: PMC8407300.
      View in: PubMed   Mentions:    Fields:    
    18. Longitudinal linked-read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment. Genome Res. 2021 08; 31(8):1433-1446. Roodgar M, Good BH, Garud NR, Martis S, Avula M, Zhou W, Lancaster SM, Lee H, Babveyh A, Nesamoney S, Pollard KS, Snyder MP. PMID: 34301627; PMCID: PMC8327913.
      View in: PubMed   Mentions: 37     Fields:    Translation:Humans
    19. Detection of hard and soft selective sweeps from Drosophila melanogaster population genomic data. PLoS Genet. 2021 02; 17(2):e1009373. Garud NR, Messer PW, Petrov DA. PMID: 33635910; PMCID: PMC7946363.
      View in: PubMed   Mentions: 24     Fields:    Translation:Animals
    20. Genetic Adaptation in New York City Rats. Genome Biol Evol. 2021 01 07; 13(1). Harpak A, Garud N, Rosenberg NA, Petrov DA, Combs M, Pennings PS, Munshi-South J. PMID: 33211096; PMCID: PMC7851592.
      View in: PubMed   Mentions: 9     Fields:    Translation:Animals
    21. Population Genetics in the Human Microbiome. Trends Genet. 2020 01; 36(1):53-67. Garud NR, Pollard KS. PMID: 31780057.
      View in: PubMed   Mentions: 45     Fields:    Translation:HumansCells
    22. Evolutionary dynamics of bacteria in the gut microbiome within and across hosts. PLoS Biol. 2019 01; 17(1):e3000102. Garud NR, Good BH, Hallatschek O, Pollard KS. PMID: 30673701; PMCID: PMC6361464.
      View in: PubMed   Mentions: 148     Fields:    Translation:HumansCells
    23. Structural Variants and Selective Sweep Foci Contribute to Insecticide Resistance in the Drosophila Genetic Reference Panel. G3 (Bethesda). 2018 11 06; 8(11):3489-3497. Battlay P, Leblanc PB, Green L, Garud NR, Schmidt JM, Fournier-Level A, Robin C. PMID: 30190421; PMCID: PMC6222580.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    24. Detection and Classification of Hard and Soft Sweeps from Unphased Genotypes by Multilocus Genotype Identity. Genetics. 2018 12; 210(4):1429-1452. Harris AM, Garud NR, DeGiorgio M. PMID: 30315068; PMCID: PMC6283157.
      View in: PubMed   Mentions: 35     Fields:    Translation:Humans
    25. An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography. Genome Res. 2016 11; 26(11):1612-1625. Nayfach S, Rodriguez-Mueller B, Garud N, Pollard KS. PMID: 27803195; PMCID: PMC5088602.
      View in: PubMed   Mentions: 238     Fields:    Translation:HumansCellsPHPublic Health
    26. Elevated Linkage Disequilibrium and Signatures of Soft Sweeps Are Common in Drosophila melanogaster. Genetics. 2016 06; 203(2):863-80. Garud NR, Petrov DA. PMID: 27098909; PMCID: PMC4896199.
      View in: PubMed   Mentions: 21     Fields:    Translation:Animals
    27. The population genetics of drug resistance evolution in natural populations of viral, bacterial and eukaryotic pathogens. Mol Ecol. 2016 Jan; 25(1):42-66. Wilson BA, Garud NR, Feder AF, Assaf ZJ, Pennings PS. PMID: 26578204; PMCID: PMC4943078.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    28. Enhancing the mathematical properties of new haplotype homozygosity statistics for the detection of selective sweeps. Theor Popul Biol. 2015 Jun; 102:94-101. Garud NR, Rosenberg NA. PMID: 25891325; PMCID: PMC4447712.
      View in: PubMed   Mentions: 20     Fields:    Translation:Animals
    29. Recent selective sweeps in North American Drosophila melanogaster show signatures of soft sweeps. PLoS Genet. 2015 Feb; 11(2):e1005004. Garud NR, Messer PW, Buzbas EO, Petrov DA. PMID: 25706129; PMCID: PMC4338236.
      View in: PubMed   Mentions: 217     Fields:    Translation:Animals
    30. Genomic inference accurately predicts the timing and severity of a recent bottleneck in a nonmodel insect population. Mol Ecol. 2014 Jan; 23(1):136-50. McCoy RC, Garud NR, Kelley JL, Boggs CL, Petrov DA. PMID: 24237665; PMCID: PMC4476905.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    31. Molecular evidence for a single evolutionary origin of domesticated rice. Proc Natl Acad Sci U S A. 2011 May 17; 108(20):8351-6. Molina J, Sikora M, Garud N, Flowers JM, Rubinstein S, Reynolds A, Huang P, Jackson S, Schaal BA, Bustamante CD, Boyko AR, Purugganan MD. PMID: 21536870; PMCID: PMC3101000.
      View in: PubMed   Mentions: 146     Fields:    Translation:Animals
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