Elior Rahmani

Title(s)	Adjunct Instructor, Computational Medicine
School	Medicine
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Publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.

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Unraveling the Associations Between Voice Pitch and Major Depressive Disorder: A Multisite Genetic Study. medRxiv. 2024 Oct 13. Di Y, Rahmani E, Mefford J, Wang J, Ravi V, Gorla A, Alwan A, Kendler KS, Zhu T, Flint J. PMID: 39417141; PMCID: PMC11482971.

View in: PubMed Mentions:
Accurate prediction of disease-risk factors from volumetric medical scans by a deep vision model pre-trained with 2D scans. Nat Biomed Eng. 2024 Oct 01. Avram O, Durmus B, Rakocz N, Corradetti G, An U, Nittala MG, Terway P, Rudas A, Chen ZJ, Wakatsuki Y, Hirabayashi K, Velaga S, Tiosano L, Corvi F, Verma A, Karamat A, Lindenberg S, Oncel D, Almidani L, Hull V, Fasih-Ahmad S, Esmaeilkhanian H, Cannesson M, Wykoff CC, Rahmani E, Arnold CW, Zhou B, Zaitlen N, Gronau I, Sankararaman S, Chiang JN, Sadda SR, Halperin E. PMID: 39354052.

View in: PubMed Mentions: Fields:
Bio Biomedical Engineering
Epigenetic patient stratification via contrastive machine learning refines hallmark biomarkers in minoritized children with asthma. Res Sq. 2024 Sep 13. Gorla A, Witonsky J, Elhawary JR, Chen ZJ, Mefford J, Perez-Garcia J, Huntsman S, Hu D, Eng C, Woodruff PG, Sankararaman S, Ziv E, Flint J, Zaitlen N, Burchard E, Rahmani E. PMID: 39315258; PMCID: PMC11419268.

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Genome wide association study and genomic risk prediction of age related macular degeneration in Israel. Sci Rep. 2024 06 06; 14(1):13034. Grunin M, Triffon D, Beykin G, Rahmani E, Schweiger R, Tiosano L, Khateb S, Hagbi-Levi S, Rinsky B, Munitz R, Winkler TW, Heid IM, Halperin E, Carmi S, Chowers I. PMID: 38844476; PMCID: PMC11156861.

View in: PubMed Mentions: 1 Fields:
Sci Science
Translation:Humans
Genetic association analysis of human median voice pitch identifies a common locus for tonal and non-tonal languages. Commun Biol. 2024 May 07; 7(1):540. Di Y, Mefford J, Rahmani E, Wang J, Ravi V, Gorla A, Alwan A, Zhu T, Flint J. PMID: 38714798; PMCID: PMC11076565.

View in: PubMed Mentions: Translation:Humans
Highly parameterized polygenic scores tend to overfit to population stratification via random effects. bioRxiv. 2024 Jan 29. Aw AJ, McRae J, Rahmani E, Song YS. PMID: 38352303; PMCID: PMC10862757.

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Multimodal profiling reveals tissue-directed signatures of human immune cells altered with age. bioRxiv. 2024 Jan 04. Wells SB, Rainbow DB, Mark M, Szabo PA, Ergen C, Maceiras AR, Caron DP, Rahmani E, Benuck E, Amiri VVP, Chen D, Wagner A, Howlett SK, Jarvis LB, Ellis KL, Kubota M, Matsumoto R, Mahbubani K, Saeb-Parsy K, Dominguez-Conde C, Richardson L, Xu C, Li S, Mamanova L, Bolt L, Wilk A, Teichmann SA, Farber DL, Sims PA, Jones JL, Yosef N. PMID: 38260588; PMCID: PMC10802388.

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SLIViT: a general AI framework for clinical-feature diagnosis from limited 3D biomedical-imaging data. Res Sq. 2023 Nov 21. Avram O, Durmus B, Rakocz N, Corradetti G, An U, Nitalla MG, Rudas A, Wakatsuki Y, Hirabayashi K, Velaga S, Tiosano L, Corvi F, Verma A, Karamat A, Lindenberg S, Oncel D, Almidani L, Hull V, Fasih-Ahmad S, Esmaeilkhanian H, Wykoff CC, Rahmani E, Arnold CW, Zhou B, Zaitlen N, Gronau I, Sankararaman S, Chiang JN, Sadda SR, Halperin E. PMID: 38045283; PMCID: PMC10690310.

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Genome-wide association study and genomic risk prediction of age-related macular degeneration in Israel. medRxiv. 2023 Sep 06. Grunin M, Triffon D, Beykin G, Rahmani E, Schweiger R, Tiosano L, Khateb S, Hagbi-Levi S, Rinsky B, Munitz R, Winkler TW, Heid IM, Halperin E, Carmi S, Chowers I. PMID: 37732190; PMCID: PMC10508791.

View in: PubMed Mentions:
Phenotypic subtyping via contrastive learning. bioRxiv. 2023 Jan 06. Gorla A, Sankararaman S, Burchard E, Flint J, Zaitlen N, Rahmani E. PMID: 36711575; PMCID: PMC9881932.

View in: PubMed Mentions: 1
The Effect of Model Directionality on Cell-Type-Specific Differential DNA Methylation Analysis. Front Bioinform. 2021; 1:792605. Rahmani E, Jew B, Halperin E. PMID: 36303752; PMCID: PMC9580934.

View in: PubMed Mentions:
A machine learning algorithm to increase COVID-19 inpatient diagnostic capacity. PLoS One. 2020; 15(9):e0239474. Goodman-Meza D, Rudas A, Chiang JN, Adamson PC, Ebinger J, Sun N, Botting P, Fulcher JA, Saab FG, Brook R, Eskin E, An U, Kordi M, Jew B, Balliu B, Chen Z, Hill BL, Rahmani E, Halperin E, Manuel V. PMID: 32960917; PMCID: PMC7508387.

View in: PubMed Mentions: 24 Fields:
Med Medicine (General)Sci Science
Translation:Humans Cells PHPublic Health
The causal effect of obesity on prediabetes and insulin resistance reveals the important role of adipose tissue in insulin resistance. PLoS Genet. 2020 09; 16(9):e1009018. Miao Z, Alvarez M, Ko A, Bhagat Y, Rahmani E, Jew B, Heinonen S, Muñoz-Hernandez LL, Herrera-Hernandez M, Aguilar-Salinas C, Tusie-Luna T, Mohlke KL, Laakso M, Pietiläinen KH, Halperin E, Pajukanta P. PMID: 32925908; PMCID: PMC7515203.

View in: PubMed Mentions: 26 Fields:
Gen Genetics
Translation:Humans Cells
Enhancing droplet-based single-nucleus RNA-seq resolution using the semi-supervised machine learning classifier DIEM. Sci Rep. 2020 07 03; 10(1):11019. Alvarez M, Rahmani E, Jew B, Garske KM, Miao Z, Benhammou JN, Ye CJ, Pisegna JR, Pietiläinen KH, Halperin E, Pajukanta P. PMID: 32620816; PMCID: PMC7335186.

View in: PubMed Mentions: 45 Fields:
Sci Science
Translation:Humans Animals
Publisher Correction: Accurate estimation of cell composition in bulk expression through robust integration of single-cell information. Nat Commun. 2020 06 03; 11(1):2891. Jew B, Alvarez M, Rahmani E, Miao Z, Ko A, Garske KM, Sul JH, Pietiläinen KH, Pajukanta P, Halperin E. PMID: 32493922; PMCID: PMC7270096.

View in: PubMed Mentions: 1 Fields:
Bio Biology Sci Science
Accurate estimation of cell composition in bulk expression through robust integration of single-cell information. Nat Commun. 2020 04 24; 11(1):1971. Jew B, Alvarez M, Rahmani E, Miao Z, Ko A, Garske KM, Sul JH, Pietiläinen KH, Pajukanta P, Halperin E. PMID: 32332754; PMCID: PMC7181686.

View in: PubMed Mentions: 159 Fields:
Bio Biology Sci Science
Translation:Humans Cells
Association of a Variant in VWA3A with Response to Anti-Vascular Endothelial Growth Factor Treatment in Neovascular AMD. Invest Ophthalmol Vis Sci. 2020 02 07; 61(2):48. Grunin M, Beykin G, Rahmani E, Schweiger R, Barel G, Hagbi-Levi S, Elbaz-Hayoun S, Rinsky B, Ganiel M, Carmi S, Halperin E, Chowers I. PMID: 32106291; PMCID: PMC7329947.

View in: PubMed Mentions: 4 Fields:
Oph Ophthalmology
Translation:Humans
Cell-type-specific resolution epigenetics without the need for cell sorting or single-cell biology. Nat Commun. 2019 07 31; 10(1):3417. Rahmani E, Schweiger R, Rhead B, Criswell LA, Barcellos LF, Eskin E, Rosset S, Sankararaman S, Halperin E. PMID: 31366909; PMCID: PMC6668473.

View in: PubMed Mentions: 65 Fields:
Bio Biology Sci Science
Translation:Humans Cells
CONFINED: distinguishing biological from technical sources of variation by leveraging multiple methylation datasets. Genome Biol. 2019 07 12; 20(1):138. Thompson M, Chen ZJ, Rahmani E, Halperin E. PMID: 31300005; PMCID: PMC6624895.

View in: PubMed Mentions: 3 Fields:
Gen Genetics
Translation:Cells
Detecting heritable phenotypes without a model using fast permutation testing for heritability and set-tests. Nat Commun. 2018 11 21; 9(1):4919. Schweiger R, Fisher E, Weissbrod O, Rahmani E, Müller-Nurasyid M, Kunze S, Gieger C, Waldenberger M, Rosset S, Halperin E. PMID: 30464216; PMCID: PMC6249264.

View in: PubMed Mentions: 3 Fields:
Bio Biology Sci Science
Translation:Cells
BayesCCE: a Bayesian framework for estimating cell-type composition from DNA methylation without the need for methylation reference. Genome Biol. 2018 09 21; 19(1):141. Rahmani E, Schweiger R, Shenhav L, Wingert T, Hofer I, Gabel E, Eskin E, Halperin E. PMID: 30241486; PMCID: PMC6151042.

View in: PubMed Mentions: 31 Fields:
Gen Genetics
Translation:Cells
Using Stochastic Approximation Techniques to Efficiently Construct Confidence Intervals for Heritability. J Comput Biol. 2018 07; 25(7):794-808. Schweiger R, Fisher E, Rahmani E, Shenhav L, Rosset S, Halperin E. PMID: 29932739.

View in: PubMed Mentions: 5 Fields:
Com Computational Biology Mol Molecular Biology
Translation:Humans
RL-SKAT: An Exact and Efficient Score Test for Heritability and Set Tests. Genetics. 2017 12; 207(4):1275-1283. Schweiger R, Weissbrod O, Rahmani E, Müller-Nurasyid M, Kunze S, Gieger C, Waldenberger M, Rosset S, Halperin E. PMID: 29025915; PMCID: PMC5714447.

View in: PubMed Mentions: 8 Fields:
Gen Genetics
Translation:Humans
Association testing of bisulfite-sequencing methylation data via a Laplace approximation. Bioinformatics. 2017 Jul 15; 33(14):i325-i332. Weissbrod O, Rahmani E, Schweiger R, Rosset S, Halperin E. PMID: 28881982; PMCID: PMC5870555.

View in: PubMed Mentions: 5 Fields:
Com Computational Biology
Translation:Humans Cells
GLINT: a user-friendly toolset for the analysis of high-throughput DNA-methylation array data. Bioinformatics. 2017 Jun 15; 33(12):1870-1872. Rahmani E, Yedidim R, Shenhav L, Schweiger R, Weissbrod O, Zaitlen N, Halperin E. PMID: 28177067; PMCID: PMC5870777.

View in: PubMed Mentions: 36 Fields:
Com Computational Biology
Translation:Humans Cells
Rheumatoid Arthritis Naive T Cells Share Hypermethylation Sites With Synoviocytes. Arthritis Rheumatol. 2017 03; 69(3):550-559. Rhead B, Holingue C, Cole M, Shao X, Quach HL, Quach D, Shah K, Sinclair E, Graf J, Link T, Harrison R, Rahmani E, Halperin E, Wang W, Firestein GS, Barcellos LF, Criswell LA. PMID: 27723282; PMCID: PMC5328845.

View in: PubMed Mentions: 29 Fields:
Rhe Rheumatology
Translation:Humans Cells
Correcting for cell-type heterogeneity in DNA methylation: a comprehensive evaluation. Nat Methods. 2017 02 28; 14(3):218-219. Rahmani E, Zaitlen N, Baran Y, Eng C, Hu D, Galanter J, Oh S, Burchard EG, Eskin E, Zou J, Halperin E. PMID: 28245214; PMCID: PMC5548185.

View in: PubMed Mentions: 21 Fields:
Cli Clinical Laboratory Techniques
Translation:Humans Cells
Genome-wide methylation data mirror ancestry information. Epigenetics Chromatin. 2017; 10:1. Rahmani E, Shenhav L, Schweiger R, Yousefi P, Huen K, Eskenazi B, Eng C, Huntsman S, Hu D, Galanter J, Oh SS, Waldenberger M, Strauch K, Grallert H, Meitinger T, Gieger C, Holland N, Burchard EG, Zaitlen N, Halperin E. PMID: 28149326; PMCID: PMC5267476.

View in: PubMed Mentions: 56 Fields:
Bio Biochemistry Gen Genetics
Translation:Humans Cells
Sparse PCA corrects for cell type heterogeneity in epigenome-wide association studies. Nat Methods. 2016 05; 13(5):443-5. Rahmani E, Zaitlen N, Baran Y, Eng C, Hu D, Galanter J, Oh S, Burchard EG, Eskin E, Zou J, Halperin E. PMID: 27018579; PMCID: PMC5548182.

View in: PubMed Mentions: 131 Fields:
Cli Clinical Laboratory Techniques
Translation:Humans Cells
EPIQ-efficient detection of SNP-SNP epistatic interactions for quantitative traits. Bioinformatics. 2014 Jun 15; 30(12):i19-25. Arkin Y, Rahmani E, Kleber ME, Laaksonen R, März W, Halperin E. PMID: 24931983; PMCID: PMC4229902.

View in: PubMed Mentions: 7 Fields:
Com Computational Biology
Translation:Humans