Elior Rahmani

Title(s)Adjunct Instructor, Computational Medicine
SchoolMedicine
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Single-cell DNA methylome and 3D genome atlas of the human subcutaneous adipose tissue. bioRxiv. 2024 Nov 03. Chen ZJ, Das SS, Kar A, Lee SHT, Abuhanna KD, Alvarez M, Sukhatme MG, Gelev KZ, Heffel MG, Zhang Y, Avram O, Rahmani E, Sankararaman S, Heinonen S, Peltoniemi H, Halperin E, Pietiläinen KH, Luo C, Pajukanta P. PMID: 39554055; PMCID: PMC11566006.
      View in: PubMed   Mentions:
    2. Unraveling the Associations Between Voice Pitch and Major Depressive Disorder: A Multisite Genetic Study. medRxiv. 2024 Oct 13. Di Y, Rahmani E, Mefford J, Wang J, Ravi V, Gorla A, Alwan A, Kendler KS, Zhu T, Flint J. PMID: 39417141; PMCID: PMC11482971.
      View in: PubMed   Mentions:
    3. Accurate prediction of disease-risk factors from volumetric medical scans by a deep vision model pre-trained with 2D scans. Nat Biomed Eng. 2024 Oct 01. Avram O, Durmus B, Rakocz N, Corradetti G, An U, Nittala MG, Terway P, Rudas A, Chen ZJ, Wakatsuki Y, Hirabayashi K, Velaga S, Tiosano L, Corvi F, Verma A, Karamat A, Lindenberg S, Oncel D, Almidani L, Hull V, Fasih-Ahmad S, Esmaeilkhanian H, Cannesson M, Wykoff CC, Rahmani E, Arnold CW, Zhou B, Zaitlen N, Gronau I, Sankararaman S, Chiang JN, Sadda SR, Halperin E. PMID: 39354052.
      View in: PubMed   Mentions:    Fields:    
    4. Epigenetic patient stratification via contrastive machine learning refines hallmark biomarkers in minoritized children with asthma. Res Sq. 2024 Sep 13. Gorla A, Witonsky J, Elhawary JR, Chen ZJ, Mefford J, Perez-Garcia J, Huntsman S, Hu D, Eng C, Woodruff PG, Sankararaman S, Ziv E, Flint J, Zaitlen N, Burchard E, Rahmani E. PMID: 39315258; PMCID: PMC11419268.
      View in: PubMed   Mentions:
    5. Genome wide association study and genomic risk prediction of age related macular degeneration in Israel. Sci Rep. 2024 06 06; 14(1):13034. Grunin M, Triffon D, Beykin G, Rahmani E, Schweiger R, Tiosano L, Khateb S, Hagbi-Levi S, Rinsky B, Munitz R, Winkler TW, Heid IM, Halperin E, Carmi S, Chowers I. PMID: 38844476; PMCID: PMC11156861.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    6. Genetic association analysis of human median voice pitch identifies a common locus for tonal and non-tonal languages. Commun Biol. 2024 May 07; 7(1):540. Di Y, Mefford J, Rahmani E, Wang J, Ravi V, Gorla A, Alwan A, Zhu T, Flint J. PMID: 38714798; PMCID: PMC11076565.
      View in: PubMed   Mentions: Translation:Humans
    7. Highly parameterized polygenic scores tend to overfit to population stratification via random effects. bioRxiv. 2024 Jan 29. Aw AJ, McRae J, Rahmani E, Song YS. PMID: 38352303; PMCID: PMC10862757.
      View in: PubMed   Mentions:
    8. Multimodal profiling reveals tissue-directed signatures of human immune cells altered with age. bioRxiv. 2024 Jan 04. Wells SB, Rainbow DB, Mark M, Szabo PA, Ergen C, Maceiras AR, Caron DP, Rahmani E, Benuck E, Amiri VVP, Chen D, Wagner A, Howlett SK, Jarvis LB, Ellis KL, Kubota M, Matsumoto R, Mahbubani K, Saeb-Parsy K, Dominguez-Conde C, Richardson L, Xu C, Li S, Mamanova L, Bolt L, Wilk A, Teichmann SA, Farber DL, Sims PA, Jones JL, Yosef N. PMID: 38260588; PMCID: PMC10802388.
      View in: PubMed   Mentions:
    9. SLIViT: a general AI framework for clinical-feature diagnosis from limited 3D biomedical-imaging data. Res Sq. 2023 Nov 21. Avram O, Durmus B, Rakocz N, Corradetti G, An U, Nitalla MG, Rudas A, Wakatsuki Y, Hirabayashi K, Velaga S, Tiosano L, Corvi F, Verma A, Karamat A, Lindenberg S, Oncel D, Almidani L, Hull V, Fasih-Ahmad S, Esmaeilkhanian H, Wykoff CC, Rahmani E, Arnold CW, Zhou B, Zaitlen N, Gronau I, Sankararaman S, Chiang JN, Sadda SR, Halperin E. PMID: 38045283; PMCID: PMC10690310.
      View in: PubMed   Mentions:
    10. Genome-wide association study and genomic risk prediction of age-related macular degeneration in Israel. medRxiv. 2023 Sep 06. Grunin M, Triffon D, Beykin G, Rahmani E, Schweiger R, Tiosano L, Khateb S, Hagbi-Levi S, Rinsky B, Munitz R, Winkler TW, Heid IM, Halperin E, Carmi S, Chowers I. PMID: 37732190; PMCID: PMC10508791.
      View in: PubMed   Mentions:
    11. Phenotypic subtyping via contrastive learning. bioRxiv. 2023 Jan 06. Gorla A, Sankararaman S, Burchard E, Flint J, Zaitlen N, Rahmani E. PMID: 36711575; PMCID: PMC9881932.
      View in: PubMed   Mentions: 1  
    12. The Effect of Model Directionality on Cell-Type-Specific Differential DNA Methylation Analysis. Front Bioinform. 2021; 1:792605. Rahmani E, Jew B, Halperin E. PMID: 36303752; PMCID: PMC9580934.
      View in: PubMed   Mentions: 1  
    13. A machine learning algorithm to increase COVID-19 inpatient diagnostic capacity. PLoS One. 2020; 15(9):e0239474. Goodman-Meza D, Rudas A, Chiang JN, Adamson PC, Ebinger J, Sun N, Botting P, Fulcher JA, Saab FG, Brook R, Eskin E, An U, Kordi M, Jew B, Balliu B, Chen Z, Hill BL, Rahmani E, Halperin E, Manuel V. PMID: 32960917; PMCID: PMC7508387.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansCellsPHPublic Health
    14. The causal effect of obesity on prediabetes and insulin resistance reveals the important role of adipose tissue in insulin resistance. PLoS Genet. 2020 09; 16(9):e1009018. Miao Z, Alvarez M, Ko A, Bhagat Y, Rahmani E, Jew B, Heinonen S, Muñoz-Hernandez LL, Herrera-Hernandez M, Aguilar-Salinas C, Tusie-Luna T, Mohlke KL, Laakso M, Pietiläinen KH, Halperin E, Pajukanta P. PMID: 32925908; PMCID: PMC7515203.
      View in: PubMed   Mentions: 27     Fields:    Translation:HumansCells
    15. Enhancing droplet-based single-nucleus RNA-seq resolution using the semi-supervised machine learning classifier DIEM. Sci Rep. 2020 07 03; 10(1):11019. Alvarez M, Rahmani E, Jew B, Garske KM, Miao Z, Benhammou JN, Ye CJ, Pisegna JR, Pietiläinen KH, Halperin E, Pajukanta P. PMID: 32620816; PMCID: PMC7335186.
      View in: PubMed   Mentions: 48     Fields:    Translation:HumansAnimals
    16. Publisher Correction: Accurate estimation of cell composition in bulk expression through robust integration of single-cell information. Nat Commun. 2020 06 03; 11(1):2891. Jew B, Alvarez M, Rahmani E, Miao Z, Ko A, Garske KM, Sul JH, Pietiläinen KH, Pajukanta P, Halperin E. PMID: 32493922; PMCID: PMC7270096.
      View in: PubMed   Mentions: 1     Fields:    
    17. Accurate estimation of cell composition in bulk expression through robust integration of single-cell information. Nat Commun. 2020 04 24; 11(1):1971. Jew B, Alvarez M, Rahmani E, Miao Z, Ko A, Garske KM, Sul JH, Pietiläinen KH, Pajukanta P, Halperin E. PMID: 32332754; PMCID: PMC7181686.
      View in: PubMed   Mentions: 171     Fields:    Translation:HumansCells
    18. Association of a Variant in VWA3A with Response to Anti-Vascular Endothelial Growth Factor Treatment in Neovascular AMD. Invest Ophthalmol Vis Sci. 2020 02 07; 61(2):48. Grunin M, Beykin G, Rahmani E, Schweiger R, Barel G, Hagbi-Levi S, Elbaz-Hayoun S, Rinsky B, Ganiel M, Carmi S, Halperin E, Chowers I. PMID: 32106291; PMCID: PMC7329947.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    19. Cell-type-specific resolution epigenetics without the need for cell sorting or single-cell biology. Nat Commun. 2019 07 31; 10(1):3417. Rahmani E, Schweiger R, Rhead B, Criswell LA, Barcellos LF, Eskin E, Rosset S, Sankararaman S, Halperin E. PMID: 31366909; PMCID: PMC6668473.
      View in: PubMed   Mentions: 70     Fields:    Translation:HumansCells
    20. CONFINED: distinguishing biological from technical sources of variation by leveraging multiple methylation datasets. Genome Biol. 2019 07 12; 20(1):138. Thompson M, Chen ZJ, Rahmani E, Halperin E. PMID: 31300005; PMCID: PMC6624895.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    21. Detecting heritable phenotypes without a model using fast permutation testing for heritability and set-tests. Nat Commun. 2018 11 21; 9(1):4919. Schweiger R, Fisher E, Weissbrod O, Rahmani E, Müller-Nurasyid M, Kunze S, Gieger C, Waldenberger M, Rosset S, Halperin E. PMID: 30464216; PMCID: PMC6249264.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    22. BayesCCE: a Bayesian framework for estimating cell-type composition from DNA methylation without the need for methylation reference. Genome Biol. 2018 09 21; 19(1):141. Rahmani E, Schweiger R, Shenhav L, Wingert T, Hofer I, Gabel E, Eskin E, Halperin E. PMID: 30241486; PMCID: PMC6151042.
      View in: PubMed   Mentions: 31     Fields:    Translation:Cells
    23. Using Stochastic Approximation Techniques to Efficiently Construct Confidence Intervals for Heritability. J Comput Biol. 2018 07; 25(7):794-808. Schweiger R, Fisher E, Rahmani E, Shenhav L, Rosset S, Halperin E. PMID: 29932739.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    24. RL-SKAT: An Exact and Efficient Score Test for Heritability and Set Tests. Genetics. 2017 12; 207(4):1275-1283. Schweiger R, Weissbrod O, Rahmani E, Müller-Nurasyid M, Kunze S, Gieger C, Waldenberger M, Rosset S, Halperin E. PMID: 29025915; PMCID: PMC5714447.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    25. Association testing of bisulfite-sequencing methylation data via a Laplace approximation. Bioinformatics. 2017 Jul 15; 33(14):i325-i332. Weissbrod O, Rahmani E, Schweiger R, Rosset S, Halperin E. PMID: 28881982; PMCID: PMC5870555.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    26. GLINT: a user-friendly toolset for the analysis of high-throughput DNA-methylation array data. Bioinformatics. 2017 Jun 15; 33(12):1870-1872. Rahmani E, Yedidim R, Shenhav L, Schweiger R, Weissbrod O, Zaitlen N, Halperin E. PMID: 28177067; PMCID: PMC5870777.
      View in: PubMed   Mentions: 36     Fields:    Translation:HumansCells
    27. Rheumatoid Arthritis Naive T Cells Share Hypermethylation Sites With Synoviocytes. Arthritis Rheumatol. 2017 03; 69(3):550-559. Rhead B, Holingue C, Cole M, Shao X, Quach HL, Quach D, Shah K, Sinclair E, Graf J, Link T, Harrison R, Rahmani E, Halperin E, Wang W, Firestein GS, Barcellos LF, Criswell LA. PMID: 27723282; PMCID: PMC5328845.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansCells
    28. Correcting for cell-type heterogeneity in DNA methylation: a comprehensive evaluation. Nat Methods. 2017 02 28; 14(3):218-219. Rahmani E, Zaitlen N, Baran Y, Eng C, Hu D, Galanter J, Oh S, Burchard EG, Eskin E, Zou J, Halperin E. PMID: 28245214; PMCID: PMC5548185.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansCells
    29. Genome-wide methylation data mirror ancestry information. Epigenetics Chromatin. 2017; 10:1. Rahmani E, Shenhav L, Schweiger R, Yousefi P, Huen K, Eskenazi B, Eng C, Huntsman S, Hu D, Galanter J, Oh SS, Waldenberger M, Strauch K, Grallert H, Meitinger T, Gieger C, Holland N, Burchard EG, Zaitlen N, Halperin E. PMID: 28149326; PMCID: PMC5267476.
      View in: PubMed   Mentions: 58     Fields:    Translation:HumansCells
    30. Sparse PCA corrects for cell type heterogeneity in epigenome-wide association studies. Nat Methods. 2016 05; 13(5):443-5. Rahmani E, Zaitlen N, Baran Y, Eng C, Hu D, Galanter J, Oh S, Burchard EG, Eskin E, Zou J, Halperin E. PMID: 27018579; PMCID: PMC5548182.
      View in: PubMed   Mentions: 133     Fields:    Translation:HumansCells
    31. EPIQ-efficient detection of SNP-SNP epistatic interactions for quantitative traits. Bioinformatics. 2014 Jun 15; 30(12):i19-25. Arkin Y, Rahmani E, Kleber ME, Laaksonen R, März W, Halperin E. PMID: 24931983; PMCID: PMC4229902.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
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