Xianghong Jasmine Zhou

Title(s)Professor, Pathology and Laboratory Medicine
SchoolMedicine
vCardDownload vCard

    Collapse Research 
    Collapse Research Activities and Funding
    Novel Computation Methods for the Analysis of Cell-Free DNA Sequence Data
    NIH R01CA246329Sep 1, 2019 - Aug 31, 2023
    Role: Principal Investigator
    The UCLA Center in Early Detection of Liver Cancer
    NIH U01CA230705Sep 17, 2018 - Aug 31, 2023
    Role: Principal Investigator
    Integrative Analysis of Public RNA-seq Repositories
    NIH R01GM105431Apr 1, 2013 - Dec 31, 2017
    Role: Principal Investigator
    MAPGen Knowledge Base (MAPGenKB) and Coordination Center
    NIH U01HL108634Aug 25, 2011 - May 31, 2018
    Role: Principal Investigator
    A web platform for integrative genomic analysis in aging
    NIH R21AG031723Mar 1, 2008 - Feb 28, 2011
    Role: Principal Investigator
    Integrative Analysis of Cross-Platform Microarray Data
    NIH R01GM074163Jan 1, 2006 - Jun 30, 2011
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Generation of allogeneic CAR-NKT cells from hematopoietic stem and progenitor cells using a clinically guided culture method. Nat Biotechnol. 2024 May 14. Li YR, Zhou Y, Yu J, Kim YJ, Li M, Lee D, Zhou K, Chen Y, Zhu Y, Wang YC, Li Z, Yu Y, Dunn ZS, Guo W, Cen X, Husman T, Bajpai A, Kramer A, Wilson M, Fang Y, Huang J, Li S, Zhou Y, Zhang Y, Hahn Z, Zhu E, Ma F, Pan C, Lusis AJ, Zhou JJ, Seet CS, Kohn DB, Wang P, Zhou XJ, Pellegrini M, Puliafito BR, Larson SM, Yang L. PMID: 38744947.
      View in: PubMed   Mentions: 4     Fields:    
    2. Author Correction: Cost-effective methylome sequencing of cell-free DNA for accurately detecting and locating cancer. Nat Commun. 2024 May 01; 15(1):3693. Stackpole ML, Zeng W, Li S, Liu CC, Zhou Y, He S, Yeh A, Wang Z, Sun F, Li Q, Yuan Z, Yildirim A, Chen PJ, Winograd P, Tran B, Lee YT, Li PS, Noor Z, Yokomizo M, Ahuja P, Zhu Y, Tseng HR, Tomlinson JS, Garon E, French S, Magyar CE, Dry S, Lajonchere C, Geschwind D, Choi G, Saab S, Alber F, Wong WH, Dubinett SM, Aberle DR, Agopian V, Han SB, Ni X, Li W, Zhou XJ. PMID: 38693151; PMCID: PMC11063198.
      View in: PubMed   Mentions:    Fields:    
    3. Author Correction: cfSNV: a software tool for the sensitive detection of somatic mutations from cell-free DNA. Nat Protoc. 2024 Apr; 19(4):1289. Li S, Hu R, Small C, Kang TY, Liu CC, Zhou XJ, Li W. PMID: 38172643.
      View in: PubMed   Mentions:    Fields:    
    4. Evaluating the role of the nuclear microenvironment in gene function by population-based modeling. Nat Struct Mol Biol. 2023 08; 30(8):1193-1206. Yildirim A, Hua N, Boninsegna L, Zhan Y, Polles G, Gong K, Hao S, Li W, Zhou XJ, Alber F. PMID: 37580627; PMCID: PMC10442234.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    5. Comprehensive tissue deconvolution of cell-free DNA by deep learning for disease diagnosis and monitoring. Proc Natl Acad Sci U S A. 2023 07 11; 120(28):e2305236120. Li S, Zeng W, Ni X, Liu Q, Li W, Stackpole ML, Zhou Y, Gower A, Krysan K, Ahuja P, Lu DS, Raman SS, Hsu W, Aberle DR, Magyar CE, French SW, Han SB, Garon EB, Agopian VG, Wong WH, Dubinett SM, Zhou XJ. PMID: 37399400; PMCID: PMC10334733.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    6. cfSNV: a software tool for the sensitive detection of somatic mutations from cell-free DNA. Nat Protoc. 2023 05; 18(5):1563-1583. Li S, Hu R, Small C, Kang TY, Liu CC, Zhou XJ, Li W. PMID: 36849599; PMCID: PMC10411976.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    7. HCC EV ECG score: An extracellular vesicle-based protein assay for detection of early-stage hepatocellular carcinoma. Hepatology. 2023 03 01; 77(3):774-788. Sun N, Zhang C, Lee YT, Tran BV, Wang J, Kim H, Lee J, Zhang RY, Wang JJ, Hu J, Zhang Z, Alsudaney MS, Hou KC, Tang H, Zhang TX, Liang IY, Zhou Z, Chen M, Yeh AH, Li W, Zhou XJ, Chang HR, Han SB, Sadeghi S, Finn RS, Saab S, Busuttil RW, Noureddin M, Ayoub WS, Kuo A, Sundaram V, Al-Ghaieb B, Palomique J, Kosari K, Kim IK, Todo T, Nissen NN, Tomasi ML, You S, Posadas EM, Wu JX, Wadehra M, Sim MS, Li Y, Wang HL, French SW, Lu SC, Wu L, Pei R, Liang L, Yang JD, Agopian VG, Tseng HR, Zhu Y. PMID: 35908246; PMCID: PMC9887095.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansCells
    8. Cost-effective methylome sequencing of cell-free DNA for accurately detecting and locating cancer. Nat Commun. 2022 09 29; 13(1):5566. Stackpole ML, Zeng W, Li S, Liu CC, Zhou Y, He S, Yeh A, Wang Z, Sun F, Li Q, Yuan Z, Yildirim A, Chen PJ, Winograd P, Tran B, Lee YT, Li PS, Noor Z, Yokomizo M, Ahuja P, Zhu Y, Tseng HR, Tomlinson JS, Garon E, French S, Magyar CE, Dry S, Lajonchere C, Geschwind D, Choi G, Saab S, Alber F, Wong WH, Dubinett SM, Aberle DR, Agopian V, Han SB, Ni X, Li W, Zhou XJ. PMID: 36175411; PMCID: PMC9522828.
      View in: PubMed   Mentions: 25     Fields:    Translation:Humans
    9. Integrative genome modeling platform reveals essentiality of rare contact events in 3D genome organizations. Nat Methods. 2022 08; 19(8):938-949. Boninsegna L, Yildirim A, Polles G, Zhan Y, Quinodoz SA, Finn EH, Guttman M, Zhou XJ, Alber F. PMID: 35817938; PMCID: PMC9349046.
      View in: PubMed   Mentions: 20     Fields:    Translation:Cells
    10. Computational Analysis of High-Dimensional DNA Methylation Data for Cancer Prognosis. J Comput Biol. 2022 08; 29(8):769-781. Hu R, Zhou XJ, Li W. PMID: 35671506; PMCID: PMC9419965.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    11. cfTrack: A Method of Exome-Wide Mutation Analysis of Cell-free DNA to Simultaneously Monitor the Full Spectrum of Cancer Treatment Outcomes Including MRD, Recurrence, and Evolution. Clin Cancer Res. 2022 05 02; 28(9):1841-1853. Li S, Zeng W, Ni X, Zhou Y, Stackpole ML, Noor ZS, Yuan Z, Neal A, Memarzadeh S, Garon EB, Dubinett SM, Li W, Zhou XJ. PMID: 35149536; PMCID: PMC9126584.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    12. Early Diagnosis and Screening for Lung Cancer. Cold Spring Harb Perspect Med. 2021 09 01; 11(9). Kadara H, Tran LM, Liu B, Vachani A, Li S, Sinjab A, Zhou XJ, Dubinett SM, Krysan K. PMID: 34001525; PMCID: PMC8415293.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansCellsPHPublic Health
    13. ARG-SHINE: improve antibiotic resistance class prediction by integrating sequence homology, functional information and deep convolutional neural network. NAR Genom Bioinform. 2021 Sep; 3(3):lqab066. Wang Z, Li S, You R, Zhu S, Zhou XJ, Sun F. PMID: 34377977; PMCID: PMC8341004.
      View in: PubMed   Mentions: 5  
    14. Sensitive detection of tumor mutations from blood and its application to immunotherapy prognosis. Nat Commun. 2021 07 07; 12(1):4172. Li S, Noor ZS, Zeng W, Stackpole ML, Ni X, Zhou Y, Yuan Z, Wong WH, Agopian VG, Dubinett SM, Alber F, Li W, Garon EB, Zhou XJ. PMID: 34234141; PMCID: PMC8263778.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCTClinical Trials
    15. Methylation extends the reach of liquid biopsy in cancer detection. Nat Rev Clin Oncol. 2020 11; 17(11):655-656. Li W, Zhou XJ. PMID: 32732909; PMCID: PMC8284425.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansCells
    16. Somatic copy number profiling from hepatocellular carcinoma circulating tumor cells. NPJ Precis Oncol. 2020; 4:16. Court CM, Hou S, Liu L, Winograd P, DiPardo BJ, Liu SX, Chen PJ, Zhu Y, Smalley M, Zhang R, Sadeghi S, Finn RS, Kaldas FM, Busuttil RW, Zhou XJ, Tseng HR, Tomlinson JS, Graeber TG, Agopian VG. PMID: 32637655; PMCID: PMC7331695.
      View in: PubMed   Mentions: 8  
    17. Rapid diagnosis and comprehensive bacteria profiling of sepsis based on cell-free DNA. J Transl Med. 2020 01 06; 18(1):5. Chen P, Li S, Li W, Ren J, Sun F, Liu R, Zhou XJ. PMID: 31906978; PMCID: PMC6943891.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    18. The size of cell-free mitochondrial DNA in blood is inversely correlated with tumor burden in cancer patients. Precis Clin Med. 2019 Sep; 2(3):131-139. An Q, Hu Y, Li Q, Chen X, Huang J, Pellegrini M, Zhou XJ, Rettig M, Fan G. PMID: 31598384; PMCID: PMC6770274.
      View in: PubMed   Mentions: 15  
    19. CMEP: a database for circulating microRNA expression profiling. Bioinformatics. 2019 09 01; 35(17):3127-3132. Li JR, Tong CY, Sung TJ, Kang TY, Zhou XJ, Liu CC. PMID: 30668638; PMCID: PMC7963074.
      View in: PubMed   Mentions: 17     Fields:    Translation:Cells
    20. CancerDetector: ultrasensitive and non-invasive cancer detection at the resolution of individual reads using cell-free DNA methylation sequencing data. Nucleic Acids Res. 2018 09 06; 46(15):e89. Li W, Li Q, Kang S, Same M, Zhou Y, Sun C, Liu CC, Matsuoka L, Sher L, Wong WH, Alber F, Zhou XJ. PMID: 29897492; PMCID: PMC6125664.
      View in: PubMed   Mentions: 84     Fields:    Translation:HumansCells
    21. Producing genome structure populations with the dynamic and automated PGS software. Nat Protoc. 2018 05; 13(5):915-926. Hua N, Tjong H, Shin H, Gong K, Zhou XJ, Alber F. PMID: 29622804; PMCID: PMC6043163.
      View in: PubMed   Mentions: 37     Fields:    Translation:Cells
    22. The three-dimensional genome organization of Drosophila melanogaster through data integration. Genome Biol. 2017 07 31; 18(1):145. Li Q, Tjong H, Li X, Gong K, Zhou XJ, Chiolo I, Alber F. PMID: 28760140; PMCID: PMC5576134.
      View in: PubMed   Mentions: 56     Fields:    Translation:AnimalsCells
    23. CancerLocator: non-invasive cancer diagnosis and tissue-of-origin prediction using methylation profiles of cell-free DNA. Genome Biol. 2017 03 24; 18(1):53. Kang S, Li Q, Chen Q, Zhou Y, Park S, Lee G, Grimes B, Krysan K, Yu M, Wang W, Alber F, Sun F, Dubinett SM, Li W, Zhou XJ. PMID: 28335812; PMCID: PMC5364586.
      View in: PubMed   Mentions: 112     Fields:    Translation:HumansCells
    24. Population-based 3D genome structure analysis reveals driving forces in spatial genome organization. Proc Natl Acad Sci U S A. 2016 Mar 22; 113(12):E1663-72. Tjong H, Li W, Kalhor R, Dai C, Hao S, Gong K, Zhou Y, Li H, Zhou XJ, Le Gros MA, Larabell CA, Chen L, Alber F. PMID: 26951677; PMCID: PMC4812752.
      View in: PubMed   Mentions: 108     Fields:    Translation:HumansAnimalsCells
    25. Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing. Cell. 2016 02 11; 164(4):805-17. Yang X, Coulombe-Huntington J, Kang S, Sheynkman GM, Hao T, Richardson A, Sun S, Yang F, Shen YA, Murray RR, Spirohn K, Begg BE, Duran-Frigola M, MacWilliams A, Pevzner SJ, Zhong Q, Wanamaker SA, Tam S, Ghamsari L, Sahni N, Yi S, Rodriguez MD, Balcha D, Tan G, Costanzo M, Andrews B, Boone C, Zhou XJ, Salehi-Ashtiani K, Charloteaux B, Chen AA, Calderwood MA, Aloy P, Roth FP, Hill DE, Iakoucheva LM, Xia Y, Vidal M. PMID: 26871637; PMCID: PMC4882190.
      View in: PubMed   Mentions: 271     Fields:    Translation:HumansAnimalsCells
    26. TopDom: an efficient and deterministic method for identifying topological domains in genomes. Nucleic Acids Res. 2016 Apr 20; 44(7):e70. Shin H, Shi Y, Dai C, Tjong H, Gong K, Alber F, Zhou XJ. PMID: 26704975; PMCID: PMC4838359.
      View in: PubMed   Mentions: 136     Fields:    Translation:HumansAnimalsCells
    27. Cancer RNA-Seq Nexus: a database of phenotype-specific transcriptome profiling in cancer cells. Nucleic Acids Res. 2016 Jan 04; 44(D1):D944-51. Li JR, Sun CH, Li W, Chao RF, Huang CC, Zhou XJ, Liu CC. PMID: 26602695; PMCID: PMC4702907.
      View in: PubMed   Mentions: 68     Fields:    Translation:Humans
    28. Pushing the annotation of cellular activities to a higher resolution: Predicting functions at the isoform level. Methods. 2016 Jan 15; 93:110-8. Li W, Liu CC, Kang S, Li JR, Tseng YT, Zhou XJ. PMID: 26238263.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimals
    29. Comparative 3D genome structure analysis of the fission and the budding yeast. PLoS One. 2015; 10(3):e0119672. Gong K, Tjong H, Zhou XJ, Alber F. PMID: 25799503; PMCID: PMC4370715.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    30. Finding genetic overlaps among diseases based on ranked gene lists. J Comput Biol. 2015 Feb; 22(2):111-23. Chen Q, Zhou XJ, Sun F. PMID: 25684200; PMCID: PMC4326265.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    31. DNA binding by FOXP3 domain-swapped dimer suggests mechanisms of long-range chromosomal interactions. Nucleic Acids Res. 2015 Jan; 43(2):1268-82. Chen Y, Chen C, Zhang Z, Liu CC, Johnson ME, Espinoza CA, Edsall LE, Ren B, Zhou XJ, Grant SF, Wells AD, Chen L. PMID: 25567984; PMCID: PMC4333414.
      View in: PubMed   Mentions: 34     Fields:    Translation:HumansAnimalsCells
    32. Hi-Corrector: a fast, scalable and memory-efficient package for normalizing large-scale Hi-C data. Bioinformatics. 2015 Mar 15; 31(6):960-2. Li W, Gong K, Li Q, Alber F, Zhou XJ. PMID: 25391400; PMCID: PMC4380031.
      View in: PubMed   Mentions: 40     Fields:    Translation:HumansCells
    33. DiseaseConnect: a comprehensive web server for mechanism-based disease-disease connections. Nucleic Acids Res. 2014 Jul; 42(Web Server issue):W137-46. Liu CC, Tseng YT, Li W, Wu CY, Mayzus I, Rzhetsky A, Sun F, Waterman M, Chen JJ, Chaudhary PM, Loscalzo J, Crandall E, Zhou XJ. PMID: 24895436; PMCID: PMC4086092.
      View in: PubMed   Mentions: 55     Fields:    Translation:Humans
    34. Integrative analysis of many RNA-seq datasets to study alternative splicing. Methods. 2014 Jun 01; 67(3):313-24. Li W, Dai C, Kang S, Zhou XJ. PMID: 24583115; PMCID: PMC4120771.
      View in: PubMed   Mentions: 15     Fields:    Translation:Cells
    35. High-resolution functional annotation of human transcriptome: predicting isoform functions by a novel multiple instance-based label propagation method. Nucleic Acids Res. 2014 Apr; 42(6):e39. Li W, Kang S, Liu CC, Zhang S, Shi Y, Liu Y, Zhou XJ. PMID: 24369432; PMCID: PMC3973446.
      View in: PubMed   Mentions: 27     Fields:    Translation:Humans
    36. Functional DNA demethylation is accompanied by chromatin accessibility. Nucleic Acids Res. 2013 Apr; 41(7):3973-85. Pandiyan K, You JS, Yang X, Dai C, Zhou XJ, Baylin SB, Jones PA, Liang G. PMID: 23408854; PMCID: PMC3627572.
      View in: PubMed   Mentions: 49     Fields:    Translation:HumansCells
    37. Zooming in on genome organization. Nat Methods. 2012 Oct; 9(10):961-3. Zhou XJ, Alber F. PMID: 23018997; PMCID: PMC3806477.
      View in: PubMed   Mentions:    Fields:    
    38. Discovery of multi-dimensional modules by integrative analysis of cancer genomic data. Nucleic Acids Res. 2012 Oct; 40(19):9379-91. Zhang S, Liu CC, Li W, Shen H, Laird PW, Zhou XJ. PMID: 22879375; PMCID: PMC3479191.
      View in: PubMed   Mentions: 147     Fields:    Translation:HumansCells
    39. Identifying multi-layer gene regulatory modules from multi-dimensional genomic data. Bioinformatics. 2012 Oct 01; 28(19):2458-66. Li W, Zhang S, Liu CC, Zhou XJ. PMID: 22863767; PMCID: PMC3463121.
      View in: PubMed   Mentions: 62     Fields:    Translation:HumansCells
    40. Integrating many co-splicing networks to reconstruct splicing regulatory modules. BMC Syst Biol. 2012; 6 Suppl 1:S17. Dai C, Li W, Liu J, Zhou XJ. PMID: 23046974; PMCID: PMC3403501.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansCells
    41. Algorithm to identify frequent coupled modules from two-layered network series: application to study transcription and splicing coupling. J Comput Biol. 2012 Jun; 19(6):710-30. Li W, Dai C, Liu CC, Zhou XJ. PMID: 22697243; PMCID: PMC3375651.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    42. Polycomb-repressed genes have permissive enhancers that initiate reprogramming. Cell. 2011 Dec 09; 147(6):1283-94. Taberlay PC, Kelly TK, Liu CC, You JS, De Carvalho DD, Miranda TB, Zhou XJ, Liang G, Jones PA. PMID: 22153073; PMCID: PMC3240866.
      View in: PubMed   Mentions: 99     Fields:    Translation:HumansAnimalsCells
    43. A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules. Bioinformatics. 2011 Jul 01; 27(13):i401-9. Zhang S, Li Q, Liu J, Zhou XJ. PMID: 21685098; PMCID: PMC3117336.
      View in: PubMed   Mentions: 89     Fields:    Translation:Humans
    44. Integrative analysis of many weighted co-expression networks using tensor computation. PLoS Comput Biol. 2011 Jun; 7(6):e1001106. Li W, Liu CC, Zhang T, Li H, Waterman MS, Zhou XJ. PMID: 21698123; PMCID: PMC3116899.
      View in: PubMed   Mentions: 48     Fields:    Translation:Humans
    45. Bayesian approach to transforming public gene expression repositories into disease diagnosis databases. Proc Natl Acad Sci U S A. 2010 Apr 13; 107(15):6823-8. Huang H, Liu CC, Zhou XJ. PMID: 20360561; PMCID: PMC2872390.
      View in: PubMed   Mentions: 25     Fields:    Translation:Humans
    46. Joint genome-wide profiling of miRNA and mRNA expression in Alzheimer's disease cortex reveals altered miRNA regulation. PLoS One. 2010 Feb 01; 5(2):e8898. Nunez-Iglesias J, Liu CC, Morgan TE, Finch CE, Zhou XJ. PMID: 20126538; PMCID: PMC2813862.
      View in: PubMed   Mentions: 183     Fields:    Translation:Humans
    47. An integrative modular approach to systematically predict gene-phenotype associations. BMC Bioinformatics. 2010 Jan 18; 11 Suppl 1:S62. Mehan MR, Nunez-Iglesias J, Dai C, Waterman MS, Zhou XJ. PMID: 20122238; PMCID: PMC3009536.
      View in: PubMed   Mentions: 5     Fields:    
    48. Unraveling complex temporal associations in cellular systems across multiple time-series microarray datasets. J Biomed Inform. 2010 Aug; 43(4):550-9. Li W, Xu M, Zhou XJ. PMID: 20083231.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    49. An integrative network approach to map the transcriptome to the phenome. J Comput Biol. 2009 Aug; 16(8):1023-34. Mehan MR, Nunez-Iglesias J, Kalakrishnan M, Waterman MS, Zhou XJ. PMID: 19630539; PMCID: PMC3154457.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    50. Automated multidimensional phenotypic profiling using large public microarray repositories. Proc Natl Acad Sci U S A. 2009 Jul 28; 106(30):12323-8. Xu M, Li W, James GM, Mehan MR, Zhou XJ. PMID: 19590007; PMCID: PMC2708172.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimals
    51. Integrative disease classification based on cross-platform microarray data. BMC Bioinformatics. 2009 Jan 30; 10 Suppl 1:S25. Liu CC, Hu J, Kalakrishnan M, Huang H, Zhou XJ. PMID: 19208125; PMCID: PMC2648756.
      View in: PubMed   Mentions: 10     Fields:    
    52. Identifying dynamic network modules with temporal and spatial constraints. Pac Symp Biocomput. 2009; 203-14. Jin R, McCallen S, Liu CC, Xiang Y, Almaas E, Zhou XJ. PMID: 19209702.
      View in: PubMed   Mentions: 13     Fields:    
    53. An integrative approach to characterize disease-specific pathways and their coordination: a case study in cancer. BMC Genomics. 2008; 9 Suppl 1:S12. Xu M, Kao MC, Nunez-Iglesias J, Nevins JR, West M, Zhou XJ. PMID: 18366601; PMCID: PMC2386054.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansCells
    54. Systematic discovery of functional modules and context-specific functional annotation of human genome. Bioinformatics. 2007 Jul 01; 23(13):i222-9. Huang Y, Li H, Hu H, Yan X, Waterman MS, Huang H, Zhou XJ. PMID: 17646300.
      View in: PubMed   Mentions: 35     Fields:    Translation:HumansCells
    55. Gene Aging Nexus: a web database and data mining platform for microarray data on aging. Nucleic Acids Res. 2007 Jan; 35(Database issue):D756-9. Pan F, Chiu CH, Pulapura S, Mehan MR, Nunez-Iglesias J, Zhang K, Kamath K, Waterman MS, Finch CE, Zhou XJ. PMID: 17090592; PMCID: PMC1669755.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansAnimals
    56. Integrative missing value estimation for microarray data. BMC Bioinformatics. 2006 Oct 12; 7:449. Hu J, Li H, Waterman MS, Zhou XJ. PMID: 17038176; PMCID: PMC1622759.
      View in: PubMed   Mentions: 13     Fields:    
    57. Removed: Integrative differential gene expression analysis for cross-platform microarray datasets. J Biomed Inform. 2006 Aug 22. Pan F, Ma X, Zhou XJ. PMID: 17027342.
      View in: PubMed   Mentions: 1     Fields:    
    58. Integrative Array Analyzer: a software package for analysis of cross-platform and cross-species microarray data. Bioinformatics. 2006 Jul 01; 22(13):1665-7. Pan F, Kamath K, Zhang K, Pulapura S, Achar A, Nunez-Iglesias J, Huang Y, Yan X, Han J, Hu H, Xu M, Hu J, Zhou XJ. PMID: 16672260.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimals
    59. Mining coherent dense subgraphs across massive biological networks for functional discovery. Bioinformatics. 2005 Jun; 21 Suppl 1:i213-21. Hu H, Yan X, Huang Y, Han J, Zhou XJ. PMID: 15961460.
      View in: PubMed   Mentions: 61     Fields:    
    60. Functional annotation and network reconstruction through cross-platform integration of microarray data. Nat Biotechnol. 2005 Feb; 23(2):238-43. Zhou XJ, Kao MC, Huang H, Wong A, Nunez-Iglesias J, Primig M, Aparicio OM, Finch CE, Morgan TE, Wong WH. PMID: 15654329.
      View in: PubMed   Mentions: 45     Fields:    Translation:Cells
    Xianghong's Networks
    Concepts (219)
    Derived automatically from this person's publications.
    Explore
    _
    Co-Authors (46)
    People in Profiles who have published with this person.
    Explore
    _
    Similar People (60)
    People who share similar concepts with this person.
    Explore
    _
    Same Department
    Search Department
    _

    UCLA Profiles is managed by the UCSF Clinical and Translational Science Institute (CTSI), part of the Clinical and Translational Science Award program funded by the National Center for Advancing Translational Sciences (Grant Number UL1 TR000004) at the National Institutes of Health (NIH).
    This site is running Profiles RNS version UCSF-v3.1.0-6-g69de2244 on PROFILES-PWEB03. We use cookies to operate our website. We also use cookies to analyze our site’s performance and improve your experience on our site. For more information about how we use cookies, please see our Website Terms of Use.

    Copyright © The Regents of the University of California