Dan Ruan

Title(s)Associate Professor-in-Residence, Radiation Oncology
SchoolMedicine
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    1. Hypoxia-informed RBE-weighted beam orientation optimization for intensity modulated proton therapy. Med Phys. 2024 Mar; 51(3):2320-2333. Ramesh P, Ruan D, Liu SJ, Seo Y, Braunstein S, Sheng K. PMID: 38345134; PMCID: PMC10940223.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    2. ECG-free cine MRI with data-driven clustering of cardiac motion for quantification of ventricular function. NMR Biomed. 2024 Apr; 37(4):e5091. Ming Z, Pogosyan A, Gao C, Colbert CM, Wu HH, Finn JP, Ruan D, Hu P, Christodoulou AG, Nguyen KL. PMID: 38196195.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    3. Dosimetric predictors for genitourinary toxicity in MR-guided stereotactic body radiation therapy (SBRT): Substructure with fraction-wise analysis. Med Phys. 2024 Jan; 51(1):612-621. Pham J, Neilsen BK, Liu H, Cao M, Yang Y, Sheng K, Ma TM, Kishan AU, Ruan D. PMID: 38055353.
      View in: PubMed   Mentions:    Fields:    Translation:HumansPHPublic Health
    4. Impact of Interfractional Bladder and Trigone Displacement and Deformation on Radiation Exposure and Subsequent Acute Genitourinary Toxicity: A Post Hoc Analysis of Patients Treated with Magnetic Resonance Imaging-Guided Prostate Stereotactic Body Radiation Therapy in a Phase 3 Randomized Trial. Int J Radiat Oncol Biol Phys. 2024 Mar 15; 118(4):986-997. Neilsen BK, Ma TM, Akingbemi WO, Neylon J, Casado MC, Sharma S, Sheng K, Ruan D, Low DA, Yang Y, Valle LF, Steinberg ML, Lamb JM, Cao M, Kishan AU. PMID: 37871887.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansPHPublic HealthCTClinical Trials
    5. A quantitative CBCT pipeline based on 2D antiscatter grid and grid-based scatter sampling for image-guided radiation therapy. Med Phys. 2023 Dec; 50(12):7980-7995. Bayat F, Ruan D, Miften M, Altunbas C. PMID: 37665760; PMCID: PMC10840737.
      View in: PubMed   Mentions: 1     Fields:    
    6. Analytical HDR prostate brachytherapy planning with automatic catheter and isotope selection. Med Phys. 2023 Oct; 50(10):6525-6534. Frank CH, Ramesh P, Lyu Q, Ruan D, Park SJ, Chang AJ, Venkat PS, Kishan AU, Sheng K. PMID: 37650773; PMCID: PMC10635680.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    7. Operational Ontology for Oncology (O3): A Professional Society-Based, Multistakeholder, Consensus-Driven Informatics Standard Supporting Clinical and Research Use of Real-World Data From Patients Treated for Cancer. Int J Radiat Oncol Biol Phys. 2023 11 01; 117(3):533-550. Mayo CS, Feng MU, Brock KK, Kudner R, Balter P, Buchsbaum JC, Caissie A, Covington E, Daugherty EC, Dekker AL, Fuller CD, Hallstrom AL, Hong DS, Hong JC, Kamran SC, Katsoulakis E, Kildea J, Krauze AV, Kruse JJ, McNutt T, Mierzwa M, Moreno A, Palta JR, Popple R, Purdie TG, Richardson S, Sharp GC, Satomi S, Tarbox LR, Venkatesan AM, Witztum A, Woods KE, Yao Y, Farahani K, Aneja S, Gabriel PE, Hadjiiski L, Ruan D, Siewerdsen JH, Bratt S, Casagni M, Chen S, Christodouleas JC, DiDonato A, Hayman J, Kapoor R, Kravitz S, Sebastian S, Von Siebenthal M, Bosch W, Hurkmans C, Yom SS, Xiao Y. PMID: 37244628; PMCID: PMC10741247.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    8. Target-oriented deep learning-based image registration with individualized test-time adaptation. Med Phys. 2023 Nov; 50(11):7016-7026. Sang Y, McNitt-Gray M, Yang Y, Cao M, Low D, Ruan D. PMID: 37222565.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    9. An Efficient and Robust Method for Chest X-ray Rib Suppression That Improves Pulmonary Abnormality Diagnosis. Diagnostics (Basel). 2023 May 08; 13(9). Xu D, Xu Q, Nhieu K, Ruan D, Sheng K. PMID: 37175044; PMCID: PMC10177861.
      View in: PubMed   Mentions:
    10. Brief Report: Severe Pneumonitis After Combined Thoracic Radiotherapy and Osimertinib. JTO Clin Res Rep. 2023 Mar; 4(3):100468. Smith CP, Xiang M, Yoon SM, Lee A, Ruan D, Goldman JW, Cummings AL, Lisberg A, Garon EB, Moghanaki D. PMID: 36923158; PMCID: PMC10009282.
      View in: PubMed   Mentions: 1  
    11. A conditional registration network for continuous 4D respiratory motion synthesis. Med Phys. 2023 Jul; 50(7):4379-4387. Sang Y, Ruan D. PMID: 36655272.
      View in: PubMed   Mentions:    Fields:    
    12. VWI-APP: Vessel wall imaging-dedicated automated processing pipeline for intracranial atherosclerotic plaque quantification. Med Phys. 2023 Mar; 50(3):1496-1506. Zhou H, Xiao J, Ganesh S, Lerner A, Ruan D, Fan Z. PMID: 36345580; PMCID: PMC10033308.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    13. Dose and dose rate objectives in Bragg peak and shoot-through beam orientation optimization for FLASH proton therapy. Med Phys. 2022 Oct 12. Ramesh P, Gu W, Ruan D, Sheng K. PMID: 36222217.
      View in: PubMed   Mentions: 3     Fields:    
    14. Radiation therapy practice changes in the COVID-19 pandemic era: A pilot study in California. J Appl Clin Med Phys. 2022 Nov; 23(11):e13770. Liu X, Zhang J, Ruan D, Yu AS, Sehgal V, Qi XS, Barker MC, Shen ZL, Goetsch S. PMID: 36018624; PMCID: PMC9538496.
      View in: PubMed   Mentions:    Fields:    Translation:HumansPHPublic Health
    15. Intracranial vessel wall segmentation with deep learning using a novel tiered loss function incorporating class inclusion. Med Phys. 2022 Nov; 49(11):6975-6985. Zhou H, Xiao J, Li D, Fan Z, Ruan D. PMID: 35815927; PMCID: PMC9742123.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    16. Inter-Phase 4D Cardiac MRI Registration With a Motion Prior Derived From CTA. IEEE Trans Biomed Eng. 2022 06; 69(6):1828-1836. Sang Y, Cao M, McNitt-Gray M, Gao Y, Hu P, Yan R, Yang Y, Ruan D. PMID: 34757900.
      View in: PubMed   Mentions:    Fields:    
    17. MRA-free intracranial vessel localization on MR vessel wall images. Sci Rep. 2022 04 14; 12(1):6240. Fan W, Sang Y, Zhou H, Xiao J, Fan Z, Ruan D. PMID: 35422490; PMCID: PMC9010428.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    18. Efficient 18F-Fluorodeoxyglucose Positron Emission Tomography/Computed Tomography-based machine learning model for predicting epidermal growth factor receptor mutations in non-small cell lung cancer. Q J Nucl Med Mol Imaging. 2022 Apr 14. Ruan D, Fang J, Teng X. PMID: 35420272.
      View in: PubMed   Mentions: 3     Fields:    
    19. Rectal Radiation Dose and Clinical Outcomes in Prostate Cancer Patients Treated With Stereotactic Body Radiation Therapy With and Without Hydrogel. Front Oncol. 2022; 12:853246. Kundu P, Lin EY, Yoon SM, Parikh NR, Ruan D, Kishan AU, Lee A, Steinberg ML, Chang AJ. PMID: 35350564; PMCID: PMC8957858.
      View in: PubMed   Mentions: 1  
    20. Reformulated McNamara RBE-weighted beam orientation optimization for intensity modulated proton therapy. Med Phys. 2022 Apr; 49(4):2136-2149. Ramesh P, Lyu Q, Gu W, Ruan D, Sheng K. PMID: 35181892; PMCID: PMC9894336.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    21. Ensemble learning and tensor regularization for cone-beam computed tomography-based pelvic organ segmentation. Med Phys. 2022 Mar; 49(3):1660-1672. Zhou H, Cao M, Min Y, Yoon S, Kishan A, Ruan D. PMID: 35061244.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    22. Technical note: Air bubble-induced performance degradation in automatic rectum segmentation from cone-beam CT. Med Phys. 2022 Mar; 49(3):1754-1758. Zhou H, Cao M, Ma M, Yoon S, Kishan A, Ruan D. PMID: 35015908.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    23. Voxelwise Prediction of Recurrent High-Grade Glioma via Proximity Estimation-Coupled Multidimensional Support Vector Machine. Int J Radiat Oncol Biol Phys. 2022 04 01; 112(5):1279-1287. Lao Y, Ruan D, Vassantachart A, Fan Z, Ye JC, Chang EL, Chin R, Kaprealian T, Zada G, Shiroishi MS, Sheng K, Yang W. PMID: 34963559; PMCID: PMC8923952.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    24. Radiomics analysis combining unsupervised learning and handcrafted features: A multiple-disease study. Med Phys. 2021 Nov; 48(11):7003-7015. Wan Y, Yang P, Xu L, Yang J, Luo C, Wang J, Chen F, Wu Y, Lu Y, Ruan D, Niu T. PMID: 34453332.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    25. AI in medical physics: guidelines for publication. Med Phys. 2021 Sep; 48(9):4711-4714. El Naqa I, Boone JM, Benedict SH, Goodsitt MM, Chan HP, Drukker K, Hadjiiski L, Ruan D, Sahiner B. PMID: 34545957.
      View in: PubMed   Mentions: 5     Fields:    
    26. Using neural networks to extend cropped medical images for deformable registration among images with differing scan extents. Med Phys. 2021 Aug; 48(8):4459-4471. McKenzie EM, Tong N, Ruan D, Cao M, Chin RK, Sheng K. PMID: 34101198; PMCID: PMC8683602.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    27. An Automatic Deep Learning-Based Workflow for Glioblastoma Survival Prediction Using Preoperative Multimodal MR Images: A Feasibility Study. Adv Radiat Oncol. 2021 Sep-Oct; 6(5):100746. Fu J, Singhrao K, Zhong X, Gao Y, Qi SX, Yang Y, Ruan D, Lewis JH. PMID: 34458648; PMCID: PMC8377554.
      View in: PubMed   Mentions: 5  
    28. Scale-adaptive deep network for deformable image registration. Med Phys. 2021 Jul; 48(7):3815-3826. Sang Y, Ruan D. PMID: 33977562.
      View in: PubMed   Mentions: 1     Fields:    
    29. INTRACRANIAL VESSEL WALL SEGMENTATION FOR ATHEROSCLEROTIC PLAQUE QUANTIFICATION. Proc IEEE Int Symp Biomed Imaging. 2021 Apr; 2021:1416-1419. Zhou H, Xiao J, Fan Z, Ruan D. PMID: 34405036; PMCID: PMC8366273.
      View in: PubMed   Mentions: 2  
    30. Prediction of soft tissue sarcoma response to radiotherapy using longitudinal diffusion MRI and a deep neural network with generative adversarial network-based data augmentation. Med Phys. 2021 Jun; 48(6):3262-3372. Gao Y, Ghodrati V, Kalbasi A, Fu J, Ruan D, Cao M, Wang C, Eilber FC, Bernthal N, Bukata S, Dry SM, Nelson SD, Kamrava M, Lewis J, Low DA, Steinberg M, Hu P, Yang Y. PMID: 33908045.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    31. Three-dimensional multipath DenseNet for improving automatic segmentation of glioblastoma on pre-operative multimodal MR images. Med Phys. 2021 Jun; 48(6):2859-2866. Fu J, Singhrao K, Qi XS, Yang Y, Ruan D, Lewis JH. PMID: 33621350.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    32. Technical Note: An embedding-based medical note de-identification approach with sparse annotation. Med Phys. 2021 Mar; 48(3):1341-1348. Zhou H, Ruan D. PMID: 33340113.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    33. Assessment of Toxic Effects Associated With Dose-Fractionated Radiotherapy Among Patients With Cancer and Comorbid Collagen Vascular Disease. JAMA Netw Open. 2021 02 01; 4(2):e2034074. Yoon SM, Chu FI, Ruan D, Steinberg ML, Raldow A, Lee P. PMID: 33599771; PMCID: PMC7893499.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansPHPublic Health
    34. Treating Glioblastoma Multiforme (GBM) with super hyperfractionated radiation therapy: Implication of temporal dose fractionation optimization including cancer stem cell dynamics. PLoS One. 2021; 16(2):e0245676. Yu VY, Nguyen D, O'Connor D, Ruan D, Kaprealian T, Chin R, Sheng K. PMID: 33524046; PMCID: PMC7850476.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    35. ROAD: ROtational direct Aperture optimization with a Decoupled ring-collimator for FLASH radiotherapy. Phys Med Biol. 2021 01 29; 66(3):035020. Lyu Q, Neph R, O'Connor D, Ruan D, Boucher S, Sheng K. PMID: 33207321; PMCID: PMC8683603.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    36. Automatic detection and segmentation of multiple brain metastases on magnetic resonance image using asymmetric UNet architecture. Phys Med Biol. 2021 01 13; 66(1):015003. Cao Y, Vassantachart A, Ye JC, Yu C, Ruan D, Sheng K, Lao Y, Shen ZL, Balik S, Bian S, Zada G, Shiu A, Chang EL, Yang W. PMID: 33186927.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    37. Imposing implicit feasibility constraints on deformable image registration using a statistical generative model. J Med Imaging (Bellingham). 2020 Nov; 7(6):064005. Sang Y, Xing X, Wu Y, Ruan D. PMID: 33392357; PMCID: PMC7768000.
      View in: PubMed   Mentions: 1  
    38. A generative adversarial network-based (GAN-based) architecture for automatic fiducial marker detection in prostate MRI-only radiotherapy simulation images. Med Phys. 2020 Dec; 47(12):6405-6413. Singhrao K, Fu J, Parikh NR, Mikaeilian AG, Ruan D, Kishan AU, Lewis JH. PMID: 32989773.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    39. Analysis of Geometric Performance and Dosimetric Impact of Using Automatic Contour Segmentation for Radiotherapy Planning. Front Oncol. 2020; 10:1762. Cao M, Stiehl B, Yu VY, Sheng K, Kishan AU, Chin RK, Yang Y, Ruan D. PMID: 33102206; PMCID: PMC7546883.
      View in: PubMed   Mentions: 9  
    40. Fully automated multiorgan segmentation in abdominal magnetic resonance imaging with deep neural networks. Med Phys. 2020 Oct; 47(10):4971-4982. Chen Y, Ruan D, Xiao J, Wang L, Sun B, Saouaf R, Yang W, Li D, Fan Z. PMID: 32748401; PMCID: PMC7722015.
      View in: PubMed   Mentions: 32     Fields:    Translation:Humans
    41. Treatment effect prediction for sarcoma patients treated with preoperative radiotherapy using radiomics features from longitudinal diffusion-weighted MRIs. Phys Med Biol. 2020 08 27; 65(17):175006. Gao Y, Kalbasi A, Hsu W, Ruan D, Fu J, Shao J, Cao M, Wang C, Eilber FC, Bernthal N, Bukata S, Dry SM, Nelson SD, Kamrava M, Lewis J, Low DA, Steinberg M, Hu P, Yang Y. PMID: 32554891.
      View in: PubMed   Mentions: 25     Fields:    Translation:Humans
    42. Fraction-variant beam orientation optimization for intensity-modulated proton therapy. Med Phys. 2020 Sep; 47(9):3826-3834. Gu W, O'Connor D, Ruan D, Zou W, Dong L, Sheng K. PMID: 32564353; PMCID: PMC7845556.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    43. Linear energy transfer weighted beam orientation optimization for intensity-modulated proton therapy. Med Phys. 2021 Jan; 48(1):57-70. Gu W, Ruan D, Zou W, Dong L, Sheng K. PMID: 32542711; PMCID: PMC8216041.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    44. A motion prediction confidence estimation framework for prediction-based radiotherapy gating. Med Phys. 2020 Aug; 47(8):3297-3304. Ginn JS, Low DA, Lamb JM, Ruan D. PMID: 32415857.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    45. Development and Validation of a Comprehensive Multivariate Dosimetric Model for Predicting Late Genitourinary Toxicity Following Prostate Cancer Stereotactic Body Radiotherapy. Front Oncol. 2020; 10:786. Valle LF, Ruan D, Dang A, Levin-Epstein RG, Patel AP, Weidhaas JB, Nickols NG, Lee PP, Low DA, Qi XS, King CR, Steinberg ML, Kupelian PA, Cao M, Kishan AU. PMID: 32509582; PMCID: PMC7251156.
      View in: PubMed   Mentions: 1  
    46. Dosimetric predictors of patient-reported toxicity after prostate stereotactic body radiotherapy: Analysis of full range of the dose-volume histogram using ensemble machine learning. Radiother Oncol. 2020 07; 148:181-188. Pan X, Levin-Epstein R, Huang J, Ruan D, King CR, Kishan AU, Steinberg ML, Qi XS. PMID: 32388444.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    47. Clinical Assessment of Prostate Displacement and Planning Target Volume Margins for Stereotactic Body Radiotherapy of Prostate Cancer. Front Oncol. 2020; 10:539. Levin-Epstein R, Qiao-Guan G, Juarez JE, Shen Z, Steinberg ML, Ruan D, Valle L, Nickols NG, Kupelian PA, King CR, Cao M, Kishan AU. PMID: 32373529; PMCID: PMC7177009.
      View in: PubMed   Mentions: 15  
    48. A novel energy layer optimization framework for spot-scanning proton arc therapy. Med Phys. 2020 Jun; 47(5):2072-2084. Gu W, Ruan D, Lyu Q, Zou W, Dong L, Sheng K. PMID: 32040214; PMCID: PMC7234928.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    49. A Phase II Trial of 5-Day Neoadjuvant Radiotherapy for Patients with High-Risk Primary Soft Tissue Sarcoma. Clin Cancer Res. 2020 04 15; 26(8):1829-1836. Kalbasi A, Kamrava M, Chu FI, Telesca D, Van Dams R, Yang Y, Ruan D, Nelson SD, Dry SM, Hernandez J, Chmielowski B, Singh AS, Bukata SV, Bernthal NM, Steinberg ML, Weidhaas JB, Eilber FC. PMID: 32054730; PMCID: PMC7189949.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansCTClinical Trials
    50. Many-isocenter optimization for robotic radiotherapy. Phys Med Biol. 2020 02 10; 65(4):045003. Lyu Q, Neph R, Yu VY, Ruan D, Boucher S, Sheng K. PMID: 31851958; PMCID: PMC7100370.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    51. Quantification of fiducial marker visibility for MRI-only prostate radiotherapy simulation. Phys Med Biol. 2020 02 05; 65(3):035015. Singhrao K, Ruan D, Fu J, Gao Y, Chee G, Yang Y, King C, Hu P, Kishan AU, Lewis JH. PMID: 31881546.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    52. Generation of abdominal synthetic CTs from 0.35T MR images using generative adversarial networks for MR-only liver radiotherapy. Biomed Phys Eng Express. 2020 01 30; 6(1):015033. Fu J, Singhrao K, Cao M, Yu V, Santhanam AP, Yang Y, Guo M, Raldow AC, Ruan D, Lewis JH. PMID: 33438621.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    53. Multimodality image registration in the head-and-neck using a deep learning-derived synthetic CT as a bridge. Med Phys. 2020 Mar; 47(3):1094-1104. McKenzie EM, Santhanam A, Ruan D, O'Connor D, Cao M, Sheng K. PMID: 31853975; PMCID: PMC7067662.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    54. An image regression motion prediction technique for MRI-guided radiotherapy evaluated in single-plane cine imaging. Med Phys. 2020 Feb; 47(2):404-413. Ginn JS, Ruan D, Low DA, Lamb JM. PMID: 31808161.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    55. A sparse orthogonal collimator for small animal intensity-modulated radiation therapy part I: Planning system development and commissioning. Med Phys. 2019 Dec; 46(12):5703-5713. Woods K, Nguyen D, Neph R, Ruan D, O'Connor D, Sheng K. PMID: 31621920; PMCID: PMC6899210.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    56. Effect of Radiation Doses to the Heart on Survival for Stereotactic Ablative Radiotherapy for Early-stage Non-Small-cell Lung Cancer: An Artificial Neural Network Approach. Clin Lung Cancer. 2020 03; 21(2):136-144.e1. Chan ST, Ruan D, Shaverdian N, Raghavan G, Cao M, Lee P. PMID: 31932217.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    57. Deep learning approaches using 2D and 3D convolutional neural networks for generating male pelvic synthetic computed tomography from magnetic resonance imaging. Med Phys. 2019 Sep; 46(9):3788-3798. Fu J, Yang Y, Singhrao K, Ruan D, Chu FI, Low DA, Lewis JH. PMID: 31220353.
      View in: PubMed   Mentions: 31     Fields:    Translation:Humans
    58. Automated 4π radiotherapy treatment planning with evolving knowledge-base. Med Phys. 2019 Sep; 46(9):3833-3843. Landers A, O'Connor D, Ruan D, Sheng K. PMID: 31233619; PMCID: PMC6739129.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    59. A convolutional neural network for ultra-low-dose CT denoising and emphysema screening. Med Phys. 2019 Sep; 46(9):3941-3950. Zhao T, McNitt-Gray M, Ruan D. PMID: 31220358.
      View in: PubMed   Mentions: 14     Fields:    
    60. Robust beam orientation optimization for intensity-modulated proton therapy. Med Phys. 2019 Aug; 46(8):3356-3370. Gu W, Neph R, Ruan D, Zou W, Dong L, Sheng K. PMID: 31169917; PMCID: PMC6692214.
      View in: PubMed   Mentions: 16     Fields:    
    61. Reconstruction of a high-quality volumetric image and a respiratory motion model from patient CBCT projections. Med Phys. 2019 Aug; 46(8):3627-3639. Guo M, Chee G, O'Connell D, Dhou S, Fu J, Singhrao K, Ionascu D, Ruan D, Lee P, Low DA, Zhao J, Lewis JH. PMID: 31087359.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    62. Single-arc VMAT optimization for dual-layer MLC. Phys Med Biol. 2019 05 02; 64(9):095028. Lyu Q, Neph R, Yu VY, Ruan D, Sheng K. PMID: 30844772.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    63. Motion Compensated Dynamic MRI Reconstruction With Local Affine Optical Flow Estimation. IEEE Trans Biomed Eng. 2019 11; 66(11):3050-3059. Zhao N, O'Connor D, Basarab A, Ruan D, Sheng K. PMID: 30794164; PMCID: PMC10919160.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    64. Robust optimization for intensity-modulated proton therapy with soft spot sensitivity regularization. Med Phys. 2019 Mar; 46(3):1408-1425. Gu W, Ruan D, O'Connor D, Zou W, Dong L, Tsai MY, Jia X, Sheng K. PMID: 30570164; PMCID: PMC6581199.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    65. Multislice motion modeling for MRI-guided radiotherapy gating. Med Phys. 2019 Feb; 46(2):465-474. Ginn JS, Ruan D, Low DA, Lamb JM. PMID: 30570755; PMCID: PMC6370044.
      View in: PubMed   Mentions: 2     Fields:    
    66. Methods for registering and calibrating in vivo terahertz images of cutaneous burn wounds. Biomed Opt Express. 2019 Jan 01; 10(1):322-337. Tewari P, Garritano J, Bajwa N, Sung S, Huang H, Wang D, Grundfest W, Ennis DB, Ruan D, Brown E, Dutson E, Fishbein MC, Taylor Z. PMID: 30775103; PMCID: PMC6363189.
      View in: PubMed   Mentions: 12  
    67. Is it sufficient to evaluate bone marrow involvement in newly diagnosed lymphomas using 18F-FDG PET/CT and/or routine iliac crest biopsy? A new approach of PET/CT-guided targeted bone marrow biopsy. BMC Cancer. 2018 Nov 29; 18(1):1192. Hao B, Zhao L, Luo NN, Ruan D, Pang YZ, Guo W, Fu H, Guo XY, Luo ZM, Wu J, Chen HJ, Wu H, Sun L. PMID: 30497426; PMCID: PMC6267895.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    68. Ultra-low-dose CT image denoising using modified BM3D scheme tailored to data statistics. Med Phys. 2019 Jan; 46(1):190-198. Zhao T, Hoffman J, McNitt-Gray M, Ruan D. PMID: 30351450.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    69. Fully automatic multi-organ segmentation for head and neck cancer radiotherapy using shape representation model constrained fully convolutional neural networks. Med Phys. 2018 Oct; 45(10):4558-4567. Tong N, Gou S, Yang S, Ruan D, Sheng K. PMID: 30136285; PMCID: PMC6181786.
      View in: PubMed   Mentions: 67     Fields:    Translation:Humans
    70. Improving B0 Correction for pH-Weighted Amine Proton Chemical Exchange Saturation Transfer (CEST) Imaging by Use of k-Means Clustering and Lorentzian Estimation. Tomography. 2018 Sep; 4(3):123-137. Yao J, Yao J, Ruan D, Raymond C, Liau LM, Salamon N, Pope WB, Nghiemphu PL, Lai A, Cloughesy TF, Ellingson BM. PMID: 30320212; PMCID: PMC6173788.
      View in: PubMed   Mentions: 15     Fields:    
    71. Open adrenalectomy through a makuuchi incision: A single institution's experience. Surgery. 2018 12; 164(6):1372-1376. Ruffolo LI, Nessen MF, Probst CP, Jackson KM, Ruan DT, Schoeniger LO, Moalem J. PMID: 30149938.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    72. Machine learning and modeling: Data, validation, communication challenges. Med Phys. 2018 Oct; 45(10):e834-e840. El Naqa I, Ruan D, Valdes G, Dekker A, McNutt T, Ge Y, Wu QJ, Oh JH, Thor M, Smith W, Rao A, Fuller C, Xiao Y, Manion F, Schipper M, Mayo C, Moran JM, Ten Haken R. PMID: 30144098; PMCID: PMC6181755.
      View in: PubMed   Mentions: 22     Fields:    
    73. Improving EEG Source Localization with a Novel Regularization: Spatiotemporal Graph Total Variation (STGTV) Method. Annu Int Conf IEEE Eng Med Biol Soc. 2018 Jul; 2018:4673-4676. Zhou H, Wang Y, Li Y, Ruan D, Liu W. PMID: 30441392.
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    74. A novel optimization framework for VMAT with dynamic gantry couch rotation. Phys Med Biol. 2018 06 13; 63(12):125013. Lyu Q, Yu VY, Ruan D, Neph R, O'Connor D, Sheng K. PMID: 29786614; PMCID: PMC6075870.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    75. VMAT optimization with dynamic collimator rotation. Med Phys. 2018 Jun; 45(6):2399-2410. Lyu Q, O'Connor D, Ruan D, Yu V, Nguyen D, Sheng K. PMID: 29659018; PMCID: PMC5997563.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    76. Potential improvements of lung and prostate MLC tracking investigated by treatment simulations. Med Phys. 2018 May; 45(5):2218-2229. Toftegaard J, Keall PJ, O'Brien R, Ruan D, Ernst F, Homma N, Ichiji K, Poulsen PR. PMID: 29574859.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    77. Integrated beam orientation and scanning-spot optimization in intensity-modulated proton therapy for brain and unilateral head and neck tumors. Med Phys. 2018 Apr; 45(4):1338-1350. Gu W, O'Connor D, Nguyen D, Yu VY, Ruan D, Dong L, Sheng K. PMID: 29394454; PMCID: PMC5904040.
      View in: PubMed   Mentions: 24     Fields:    Translation:Humans
    78. Fraction-variant beam orientation optimization for non-coplanar IMRT. Phys Med Biol. 2018 02 15; 63(4):045015. O'Connor D, Yu V, Nguyen D, Ruan D, Sheng K. PMID: 29351088; PMCID: PMC5880032.
      View in: PubMed   Mentions: 13     Fields:    Translation:Humans
    79. Performance Comparison of Knowledge-Based Dose Prediction Techniques Based on Limited Patient Data. Technol Cancer Res Treat. 2018 01 01; 17:1533033818811150. Landers A, Neph R, Scalzo F, Ruan D, Sheng K. PMID: 30411666; PMCID: PMC6240972.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    80. Deterministic direct aperture optimization using multiphase piecewise constant segmentation. Med Phys. 2017 Nov; 44(11):5596-5609. Nguyen D, O'Connor D, Ruan D, Sheng K. PMID: 28834556; PMCID: PMC5689109.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    81. Respiratory motion prediction and prospective correction for free-breathing arterial spin-labeled perfusion MRI of the kidneys. Med Phys. 2017 Mar; 44(3):962-973. Song H, Ruan D, Liu W, Stenger VA, Pohmann R, Fernández-Seara MA, Nair T, Jung S, Luo J, Motai Y, Ma J, Hazle JD, Gach HM. PMID: 28074528; PMCID: PMC5474101.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    82. Genomic Heterogeneity and Exceptional Response to Dual Pathway Inhibition in Anaplastic Thyroid Cancer. Clin Cancer Res. 2017 May 01; 23(9):2367-2373. Gibson WJ, Ruan DT, Paulson VA, Barletta JA, Hanna GJ, Kraft S, Calles A, Nehs MA, Moore FD, Taylor-Weiner A, Wala JA, Zack TI, Lee TC, Fennessy FM, Alexander EK, Thomas T, Janne PA, Garraway LA, Carter SL, Beroukhim R, Lorch JH, Van Allen EM. PMID: 27797976; PMCID: PMC5393965.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansCells
    83. A general framework to learn surrogate relevance criterion for atlas based image segmentation. Phys Med Biol. 2016 09 07; 61(17):6502-14. Zhao T, Ruan D. PMID: 27524268.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    84. A comprehensive formulation for volumetric modulated arc therapy planning. Med Phys. 2016 Jul; 43(7):4263. Nguyen D, Lyu Q, Ruan D, O'Connor D, Low DA, Sheng K. PMID: 27370141; PMCID: PMC4912562.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    85. Prediction of high-dimensional states subject to respiratory motion: a manifold learning approach. Phys Med Biol. 2016 07 07; 61(13):4989-99. Liu W, Sawant A, Ruan D. PMID: 27299958; PMCID: PMC4975535.
      View in: PubMed   Mentions: 1     Fields:    
    86. Learning image based surrogate relevance criterion for atlas selection in segmentation. Phys Med Biol. 2016 06 07; 61(11):4223-34. Zhao T, Ruan D. PMID: 27192550.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    87. Image segmentation with a novel regularized composite shape prior based on surrogate study. Med Phys. 2016 May; 43(5):2187. Zhao T, Ruan D. PMID: 27147330.
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    88. A robust real-time surface reconstruction method on point clouds captured from a 3D surface photogrammetry system. Med Phys. 2016 May; 43(5):2353. Liu W, Cheung Y, Sawant A, Ruan D. PMID: 27147347; PMCID: PMC4833747.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    89. Characteristics of contralateral carcinomas in patients with differentiated thyroid cancer larger than 1 cm. Langenbecks Arch Surg. 2016 May; 401(3):365-73. Lodewijk L, Kluijfhout WP, Kist JW, Stegeman I, Plukker JT, Nieveen van Dijkum EJ, Bonjer HJ, Bouvy ND, Schepers A, de Wilt JH, Netea-Maier RT, van der Hage JA, Burger JW, Ho G, Lee WS, Shen WT, Aronova A, Zarnegar R, Benay C, Mitmaker EJ, Sywak MS, Aniss AM, Kruijff S, James B, Grogan RH, Brunaud L, Hoch G, Pandolfi C, Ruan DT, Jones MD, Guerrero MA, Valk GD, Borel Rinkes IH, Vriens MR. PMID: 27013326; PMCID: PMC4851685.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    90. A novel software and conceptual design of the hardware platform for intensity modulated radiation therapy. Med Phys. 2016 Feb; 43(2):917-29. Nguyen D, Ruan D, O'Connor D, Woods K, Low DA, Boucher S, Sheng K. PMID: 26843252; PMCID: PMC4733088.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    91. Identification of Novel Oncogenic Mutations in Thyroid Cancer. J Am Coll Surg. 2016 06; 222(6):1036-1043.e2. Pitt SC, Hernandez RA, Nehs MA, Gawande AA, Moore FD, Ruan DT, Cho NL. PMID: 27010584.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    92. Fusion set selection with surrogate metric in multi-atlas based image segmentation. Phys Med Biol. 2016 Feb 07; 61(3):1136-54. Zhao T, Ruan D. PMID: 26760496.
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    93. Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). Autophagy. 2016; 12(1):1-222. Klionsky DJ, Abdelmohsen K, Abe A, Abedin MJ, Abeliovich H, Acevedo Arozena A, Adachi H, Adams CM, Adams PD, Adeli K, Adhihetty PJ, Adler SG, Agam G, Agarwal R, Aghi MK, Agnello M, Agostinis P, Aguilar PV, Aguirre-Ghiso J, Airoldi EM, Ait-Si-Ali S, Akematsu T, Akporiaye ET, Al-Rubeai M, Albaiceta GM, Albanese C, Albani D, Albert ML, Aldudo J, Algül H, Alirezaei M, Alloza I, Almasan A, Almonte-Beceril M, Alnemri ES, Alonso C, Altan-Bonnet N, Altieri DC, Alvarez S, Alvarez-Erviti L, Alves S, Amadoro G, Amano A, Amantini C, Ambrosio S, Amelio I, Amer AO, Amessou M, Amon A, An Z, Anania FA, Andersen SU, Andley UP, Andreadi CK, Andrieu-Abadie N, Anel A, Ann DK, Anoopkumar-Dukie S, Antonioli M, Aoki H, Apostolova N, Aquila S, Aquilano K, Araki K, Arama E, Aranda A, Araya J, Arcaro A, Arias E, Arimoto H, Ariosa AR, Armstrong JL, Arnould T, Arsov I, Asanuma K, Askanas V, Asselin E, Atarashi R, Atherton SS, Atkin JD, Attardi LD, Auberger P, Auburger G, Aurelian L, Autelli R, Avagliano L, Avantaggiati ML, Avrahami L, Awale S, Azad N, Bachetti T, Backer JM, Bae DH, Bae JS, Bae ON, Bae SH, Baehrecke EH, Baek SH, Baghdiguian S, Bagniewska-Zadworna A, Bai H, Bai J, Bai XY, Bailly Y, Balaji KN, Balduini W, Ballabio A, Balzan R, Banerjee R, Bánhegyi G, Bao H, Barbeau B, Barrachina MD, Barreiro E, Bartel B, Bartolomé A, Bassham DC, Bassi MT, Bast RC, Basu A, Batista MT, Batoko H, Battino M, Bauckman K, Baumgarner BL, Bayer KU, Beale R, Beaulieu JF, Beck GR, Becker C, Beckham JD, Bédard PA, Bednarski PJ, Begley TJ, Behl C, Behrends C, Behrens GM, Behrns KE, Bejarano E, Belaid A, Belleudi F, Bénard G, Berchem G, Bergamaschi D, Bergami M, Berkhout B, Berliocchi L, Bernard A, Bernard M, Bernassola F, Bertolotti A, Bess AS, Besteiro S, Bettuzzi S, Bhalla S, Bhattacharyya S, Bhutia SK, Biagosch C, Bianchi MW, Biard-Piechaczyk M, Billes V, Bincoletto C, Bingol B, Bird SW, Bitoun M, Bjedov I, Blackstone C, Blanc L, Blanco GA, Blomhoff HK, Boada-Romero E, Böckler S, Boes M, Boesze-Battaglia K, Boise LH, Bolino A, Boman A, Bonaldo P, Bordi M, Bosch J, Botana LM, Botti J, Bou G, Bouché M, Bouchecareilh M, Boucher MJ, Boulton ME, Bouret SG, Boya P, Boyer-Guittaut M, Bozhkov PV, Brady N, Braga VM, Brancolini C, Braus GH, Bravo-San Pedro JM, Brennan LA, Bresnick EH, Brest P, Bridges D, Bringer MA, Brini M, Brito GC, Brodin B, Brookes PS, Brown EJ, Brown K, Broxmeyer HE, Bruhat A, Brum PC, Brumell JH, Brunetti-Pierri N, Bryson-Richardson RJ, Buch S, Buchan AM, Budak H, Bulavin DV, Bultman SJ, Bultynck G, Bumbasirevic V, Burelle Y, Burke RE, Burmeister M, Bütikofer P, Caberlotto L, Cadwell K, Cahova M, Cai D, Cai J, Cai Q, Calatayud S, Camougrand N, Campanella M, Campbell GR, Campbell M, Campello S, Candau R, Caniggia I, Cantoni L, Cao L, Caplan AB, Caraglia M, Cardinali C, Cardoso SM, Carew JS, Carleton LA, Carlin CR, Carloni S, Carlsson SR, Carmona-Gutierrez D, Carneiro LA, Carnevali O, Carra S, Carrier A, Carroll B, Casas C, Casas J, Cassinelli G, Castets P, Castro-Obregon S, Cavallini G, Ceccherini I, Cecconi F, Cederbaum AI, Ceña V, Cenci S, Cerella C, Cervia D, Cetrullo S, Chaachouay H, Chae HJ, Chagin AS, Chai CY, Chakrabarti G, Chamilos G, Chan EY, Chan MT, Chandra D, Chandra P, Chang CP, Chang RC, Chang TY, Chatham JC, Chatterjee S, Chauhan S, Che Y, Cheetham ME, Cheluvappa R, Chen CJ, Chen G, Chen GC, Chen G, Chen H, Chen JW, Chen JK, Chen M, Chen M, Chen P, Chen Q, Chen Q, Chen SD, Chen S, Chen SS, Chen W, Chen WJ, Chen WQ, Chen W, Chen X, Chen YH, Chen YG, Chen Y, Chen Y, Chen Y, Chen YJ, Chen YQ, Chen Y, Chen Z, Chen Z, Cheng A, Cheng CH, Cheng H, Cheong H, Cherry S, Chesney J, Cheung CH, Chevet E, Chi HC, Chi SG, Chiacchiera F, Chiang HL, Chiarelli R, Chiariello M, Chieppa M, Chin LS, Chiong M, Chiu GN, Cho DH, Cho SG, Cho WC, Cho YY, Cho YS, Choi AM, et al. PMID: 26799652; PMCID: PMC4835977.
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    94. Fast leaf-fitting with generalized underdose/overdose constraints for real-time MLC tracking. Med Phys. 2016 Jan; 43(1):465. Moore D, Ruan D, Sawant A. PMID: 26745939; PMCID: PMC4698121.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    95. A continuous surface reconstruction method on point cloud captured from a 3D surface photogrammetry system. Med Phys. 2015 Nov; 42(11):6564-71. Liu W, Cheung Y, Sabouri P, Arai TJ, Sawant A, Ruan D. PMID: 26520747; PMCID: PMC4617738.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    96. The development and verification of a highly accurate collision prediction model for automated noncoplanar plan delivery. Med Phys. 2015 Nov; 42(11):6457-67. Yu VY, Tran A, Nguyen D, Cao M, Ruan D, Low DA, Sheng K. PMID: 26520735; PMCID: PMC4608969.
      View in: PubMed   Mentions: 30     Fields:    Translation:Humans
    97. Two-stage atlas subset selection in multi-atlas based image segmentation. Med Phys. 2015 Jun; 42(6):2933-41. Zhao T, Ruan D. PMID: 26127047.
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    98. Dose domain regularization of MLC leaf patterns for highly complex IMRT plans. Med Phys. 2015 Apr; 42(4):1858-70. Nguyen D, O'Connor D, Yu VY, Ruan D, Cao M, Low DA, Sheng K. PMID: 25832076.
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    99. Dependence of achievable plan quality on treatment technique and planning goal refinement: a head-and-neck intensity modulated radiation therapy application. Int J Radiat Oncol Biol Phys. 2015 Mar 15; 91(4):817-24. Qi XS, Ruan D, Lee SP, Pham A, Kupelian P, Low DA, Steinberg M, Demarco J. PMID: 25752396.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansPHPublic Health
    100. Objective function to obtain multiple representative waveforms for a novel helical CT scan protocol. Med Phys. 2015 Mar; 42(3):1164-9. Ruan D, Thomas D, Low DA. PMID: 25735271; PMCID: PMC4327915.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    101. A unified variational segmentation framework with a level-set based sparse composite shape prior. Phys Med Biol. 2015 Mar 07; 60(5):1865-77. Liu W, Ruan D. PMID: 25668234; PMCID: PMC4373709.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    102. Shape-based motion correction in dynamic contrast-enhanced MRI for quantitative assessment of renal function. Med Phys. 2014 Dec; 41(12):122302. Liu W, Sung K, Ruan D. PMID: 25471978; PMCID: PMC4240783.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    103. Hypoglycemia after resection of pheochromocytoma. Surgery. 2014 Dec; 156(6):1404-8; discussion 1408-9. Chen Y, Hodin RA, Pandolfi C, Ruan DT, McKenzie TJ. PMID: 25456920.
      View in: PubMed   Mentions: 18     Fields:    Translation:Humans
    104. Risk scoring can predict readmission after endocrine surgery. Surgery. 2014 Dec; 156(6):1432-38; discussion 1438-40. Iannuzzi JC, Fleming FJ, Kelly KN, Ruan DT, Monson JR, Moalem J. PMID: 25456927.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    105. Correlation of Clinical and Dosimetric Parameters With Radiographic Lung Injury Following Stereotactic Body Radiotherapy. Technol Cancer Res Treat. 2015 Aug; 14(4):411-8. Kishan AU, Wang PC, Sheng K, Yu V, Ruan D, Cao M, Tenn S, Low DA, Lee P. PMID: 25261069.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansPHPublic Health
    106. False negative cytology in large thyroid nodules. Ann Surg Oncol. 2015 Jan; 22(1):152-7. Giles WH, Maclellan RA, Gawande AA, Ruan DT, Alexander EK, Moore FD, Cho NL. PMID: 25074665.
      View in: PubMed   Mentions: 26     Fields:    Translation:Humans
    107. Removing ballistocardiogram (BCG) artifact from full-scalp EEG acquired inside the MR scanner with Orthogonal Matching Pursuit (OMP). Front Neurosci. 2014; 8:218. Xia H, Ruan D, Cohen MS. PMID: 25120421; PMCID: PMC4114198.
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    108. Separation and reconstruction of BCG and EEG signals during continuous EEG and fMRI recordings. Front Neurosci. 2014; 8:163. Xia H, Ruan D, Cohen MS. PMID: 25002836; PMCID: PMC4067090.
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    109. Low-complexity atlas-based prostate segmentation by combining global, regional, and local metrics. Med Phys. 2014 Apr; 41(4):041909. Xie Q, Ruan D. PMID: 24694140.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    110. A novel fast helical 4D-CT acquisition technique to generate low-noise sorting artifact-free images at user-selected breathing phases. Int J Radiat Oncol Biol Phys. 2014 May 01; 89(1):191-8. Thomas D, Lamb J, White B, Jani S, Gaudio S, Lee P, Ruan D, McNitt-Gray M, Low D. PMID: 24613815; PMCID: PMC4097042.
      View in: PubMed   Mentions: 21     Fields:    Translation:Humans
    111. Dose impact in radiographic lung injury following lung SBRT: Statistical analysis and geometric interpretation. Med Phys. 2014 Mar; 41(3):031701. Yu V, Kishan AU, Cao M, Low D, Lee P, Ruan D. PMID: 24593705.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansPHPublic Health
    112. Integral dose investigation of non-coplanar treatment beam geometries in radiotherapy. Med Phys. 2014 Jan; 41(1):011905. Nguyen D, Dong P, Long T, Ruan D, Low DA, Romeijn E, Sheng K. PMID: 24387513.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    113. Feasibility of prostate robotic radiation therapy on conventional C-arm linacs. Pract Radiat Oncol. 2014 Jul-Aug; 4(4):254-60. Dong P, Nguyen D, Ruan D, King C, Long T, Romeijn E, Low DA, Kupelian P, Steinberg M, Yang Y, Sheng K. PMID: 25012834.
      View in: PubMed   Mentions: 21     Fields:    Translation:Humans
    114. Estimating nonrigid motion from inconsistent intensity with robust shape features. Med Phys. 2013 Dec; 40(12):121912. Liu W, Ruan D. PMID: 24320523; PMCID: PMC3855165.
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    115. Development and validation of a measurement-based source model for kilovoltage cone-beam CT Monte Carlo dosimetry simulations. Med Phys. 2013 Nov; 40(11):111907. McMillan K, McNitt-Gray M, Ruan D. PMID: 24320440; PMCID: PMC3808443.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    116. A multi-institutional international study of risk factors for hematoma after thyroidectomy. Surgery. 2013 Dec; 154(6):1283-89; discussion 1289-91. Campbell MJ, McCoy KL, Shen WT, Carty SE, Lubitz CC, Moalem J, Nehs M, Holm T, Greenblatt DY, Press D, Feng X, Siperstein AE, Mitmaker E, Benay C, Tabah R, Oltmann SC, Chen H, Sippel RS, Brekke A, Vriens MR, Lodewijk L, Stephen AE, Nagar S, Angelos P, Ghanem M, Prescott JD, Zeiger MA, Aragon Han P, Sturgeon C, Elaraj DM, Nixon IJ, Patel SG, Bayles SW, Heneghan R, Ochieng P, Guerrero MA, Ruan DT. PMID: 24206619.
      View in: PubMed   Mentions: 31     Fields:    Translation:Humans
    117. Bilateral neck exploration decreases operative time compared to minimally invasive parathyroidectomy in patients with discordant imaging. World J Surg. 2013 Jul; 37(7):1614-7. Nehs MA, Ruan DT, Gawande AA, Moore FD, Cho NL. PMID: 23519294.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    118. Dose-shaping using targeted sparse optimization. Med Phys. 2013 Jul; 40(7):071711. Sayre GA, Ruan D. PMID: 23822415.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    119. BCG Artifact Removal for Reconstructing Full-scalp EEG inside the MR Scanner. Int Workshop Pattern Recognit Neuroimaging. 2013 Jun; 2013:178-181. Xia H, Ruan D, Cohen MS. PMID: 26457321; PMCID: PMC4596714.
      View in: PubMed   Mentions: 2  
    120. 4π noncoplanar stereotactic body radiation therapy for centrally located or larger lung tumors. Int J Radiat Oncol Biol Phys. 2013 Jul 01; 86(3):407-13. Dong P, Lee P, Ruan D, Long T, Romeijn E, Low DA, Kupelian P, Abraham J, Yang Y, Sheng K. PMID: 23523322.
      View in: PubMed   Mentions: 67     Fields:    Translation:HumansPHPublic Health
    121. 4π non-coplanar liver SBRT: a novel delivery technique. Int J Radiat Oncol Biol Phys. 2013 Apr 01; 85(5):1360-6. Dong P, Lee P, Ruan D, Long T, Romeijn E, Yang Y, Low D, Kupelian P, Sheng K. PMID: 23154076.
      View in: PubMed   Mentions: 56     Fields:    Translation:HumansPHPublic Health
    122. Experimental investigation of a general real-time 3D target localization method using sequential kV imaging combined with respiratory monitoring. Phys Med Biol. 2012 Nov 21; 57(22):7395-407. Cho B, Poulsen P, Ruan D, Sawant A, Keall PJ. PMID: 23093356; PMCID: PMC3701090.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    123. Evolving treatment plan quality criteria from institution-specific experience. Med Phys. 2012 May; 39(5):2708-12. Ruan D, Shao W, Demarco J, Tenn S, King C, Low D, Kupelian P, Steinberg M. PMID: 22559641.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    124. GateCT™ surface tracking system for respiratory signal reconstruction in 4DCT imaging. Med Phys. 2012 Jan; 39(1):492-502. Kauweloa KI, Ruan D, Park JC, Sandhu A, Kim GY, Pawlicki T, Watkins WT, Song B, Song WY. PMID: 22225320.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    125. Preoperative basal calcitonin and tumor stage correlate with postoperative calcitonin normalization in patients undergoing initial surgical management of medullary thyroid carcinoma. Surgery. 2011 Dec; 150(6):1168-77. Yip DT, Hassan M, Pazaitou-Panayiotou K, Ruan DT, Gawande AA, Gaz RD, Moore FD, Hodin RA, Stephen AE, Sadow PM, Daniels GH, Randolph GW, Parangi S, Lubitz CC. PMID: 22136837; PMCID: PMC3880195.
      View in: PubMed   Mentions: 17     Fields:    Translation:Humans
    126. Electromagnetic detection and real-time DMLC adaptation to target rotation during radiotherapy. Int J Radiat Oncol Biol Phys. 2012 Mar 01; 82(3):e545-53. Wu J, Ruan D, Cho B, Sawant A, Petersen J, Newell LJ, Cattell H, Keall PJ. PMID: 22014957.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    127. Megavoltage image-based dynamic multileaf collimator tracking of a NiTi stent in porcine lungs on a linear accelerator. Int J Radiat Oncol Biol Phys. 2012 Feb 01; 82(2):e321-7. Poulsen PR, Carl J, Nielsen J, Nielsen MS, Thomsen JB, Jensen HK, Kjærgaard B, Zepernick PR, Worm E, Fledelius W, Cho B, Sawant A, Ruan D, Keall PJ. PMID: 21605944; PMCID: PMC3162131.
      View in: PubMed   Mentions: 7     Fields:    Translation:Animals
    128. Image-guided positioning and tracking. Cancer J. 2011 May-Jun; 17(3):155-8. Ruan D, Kupelian P, Low DA. PMID: 21610468.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    129. Metastatic papillary thyroid cancer misdiagnosed as non-small [corrected] cell lung cancer. Thyroid. 2011 Mar; 21(3):319-23. Moalem J, Choi DX, Khanafshar E, Ruan DT, Woeber KA, Clark OH, Kebebew E. PMID: 21254936.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    130. Dynamic MLC tracking of moving targets with a single kV imager for 3D conformal and IMRT treatments. Acta Oncol. 2010 Oct; 49(7):1092-100. Poulsen PR, Cho B, Sawant A, Ruan D, Keall PJ. PMID: 20831501.
      View in: PubMed   Mentions: 19     Fields:    Translation:Humans
    131. Detailed analysis of latencies in image-based dynamic MLC tracking. Med Phys. 2010 Sep; 37(9):4998-5005. Poulsen PR, Cho B, Sawant A, Ruan D, Keall PJ. PMID: 20964219; PMCID: PMC2945741.
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    132. Prospective detection of large prediction errors: a hypothesis testing approach. Phys Med Biol. 2010 Jul 07; 55(13):3885-904. Ruan D. PMID: 20571211.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    133. Electromagnetic-guided dynamic multileaf collimator tracking enables motion management for intensity-modulated arc therapy. Int J Radiat Oncol Biol Phys. 2011 Jan 01; 79(1):312-20. Keall PJ, Sawant A, Cho B, Ruan D, Wu J, Poulsen P, Petersen J, Newell LJ, Cattell H, Korreman S. PMID: 20615630; PMCID: PMC2953612.
      View in: PubMed   Mentions: 21     Fields:    Translation:Humans
    134. Real-time target position estimation using stereoscopic kilovoltage/megavoltage imaging and external respiratory monitoring for dynamic multileaf collimator tracking. Int J Radiat Oncol Biol Phys. 2011 Jan 01; 79(1):269-78. Cho B, Poulsen PR, Sawant A, Ruan D, Keall PJ. PMID: 20615623; PMCID: PMC2953601.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    135. Online prediction of respiratory motion: multidimensional processing with low-dimensional feature learning. Phys Med Biol. 2010 Jun 07; 55(11):3011-25. Ruan D, Keall P. PMID: 20442460; PMCID: PMC2975024.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    136. Surgery and staging of pancreatic neuroendocrine tumors: a 14-year experience. J Gastrointest Surg. 2010 May; 14(5):891-8. Ito H, Abramson M, Ito K, Swanson E, Cho N, Ruan DT, Swanson RS, Whang EE. PMID: 20224984.
      View in: PubMed   Mentions: 20     Fields:    Translation:Humans
    137. Kernel density estimation-based real-time prediction for respiratory motion. Phys Med Biol. 2010 Mar 07; 55(5):1311-26. Ruan D. PMID: 20134084.
      View in: PubMed   Mentions: 28     Fields:    Translation:Humans
    138. Dynamic multileaf collimator tracking of respiratory target motion based on a single kilovoltage imager during arc radiotherapy. Int J Radiat Oncol Biol Phys. 2010 Jun 01; 77(2):600-7. Poulsen PR, Cho B, Ruan D, Sawant A, Keall PJ. PMID: 20133066.
      View in: PubMed   Mentions: 24     Fields:    Translation:Humans
    139. Mitogen-inducible gene-6 expression correlates with survival and is an independent predictor of recurrence in BRAF(V600E) positive papillary thyroid cancers. Surgery. 2008 Dec; 144(6):908-13; discussion 913-4. Ruan DT, Warren RS, Moalem J, Chung KW, Griffin AC, Shen W, Duh QY, Nakakura E, Donner DB, Khanafshar E, Weng J, Clark OH, Kebebew E. PMID: 19040996.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    140. Mean position tracking of respiratory motion. Med Phys. 2008 Feb; 35(2):782-92. Ruan D, Fessler JA, Balter JM. PMID: 18383701.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    141. Exploring breathing pattern irregularity with projection-based method. Med Phys. 2006 Jul; 33(7):2491-9. Ruan D, Fessler JA, Balter JM, Sonke JJ. PMID: 16898452.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    142. Fractional genomic alteration detected by array-based comparative genomic hybridization independently predicts survival after hepatic resection for metastatic colorectal cancer. Clin Cancer Res. 2005 Mar 01; 11(5):1791-7. Mehta KR, Nakao K, Zuraek MB, Ruan DT, Bergsland EK, Venook AP, Moore DH, Tokuyasu TA, Jain AN, Warren RS, Terdiman JP, Waldman FM. PMID: 15756001.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansCells
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