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Shattuck, David

Title(s)Adjunct Professor, Neurology
Phone75010
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    BrainSuite: Software for Analysis and Visualization of Multimodal Brain Imaging Data
    NIH/NINDS R01NS074980May 1, 2011 - Mar 31, 2022
    Role: Principal Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Kuhn T, Jin Y, Huang C, Kim Y, Nir TM, Gullett JM, Jones JD, Sayegh P, Chung C, Dang BH, Singer EJ, Shattuck DW, Jahanshad N, Bookheimer SY, Hinkin CH, Zhu H, Thompson PM, Thames AD. The joint effect of aging and HIV infection on microstructure of white matter bundles. Hum Brain Mapp. 2019 10 15; 40(15):4370-4380. PMID: 31271489.
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    2. Shattuck DW. Multiuser virtual reality environment for visualising neuroimaging data. Healthc Technol Lett. 2018 Oct; 5(5):183-188. PMID: 30464851.
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    3. Joshi AA, Bhushan C, Salloum R, Wisnowski J, Shattuck DW, Leahy RM. Using the Anisotropic Laplace Equation to Compute Cortical Thickness. Med Image Comput Comput Assist Interv. 2018 Sep; 11072:549-556. PMID: 30734031.
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    4. Quachtran B, de la Torre Ubieta L, Yusupova M, Geschwind DH, Shattuck DW. VOTING-BASED SEGMENTATION OF OVERLAPPING NUCLEI IN CLARITY IMAGES. Proc IEEE Int Symp Biomed Imaging. 2018 Apr; 2018:658-662. PMID: 32038768.
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    5. Phillips OR, Joshi SH, Narr KL, Shattuck DW, Singh M, Di Paola M, Ploner CJ, Prüss H, Paul F, Finke C. Superficial white matter damage in anti-NMDA receptor encephalitis. J Neurol Neurosurg Psychiatry. 2018 05; 89(5):518-525. PMID: 29101253.
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    6. Chong M, Bhushan C, Joshi AA, Choi S, Haldar JP, Shattuck DW, Spreng RN, Leahy RM. Individual parcellation of resting fMRI with a group functional connectivity prior. Neuroimage. 2017 08 01; 156:87-100. PMID: 28478226.
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    7. Wang ZI, Krishnan B, Shattuck DW, Leahy RM, Moosa AN, Wyllie E, Burgess RC, Al-Sharif NB, Joshi AA, Alexopoulos AV, Mosher JC, Udayasankar U, Jones SE. Automated MRI Volumetric Analysis in Patients with Rasmussen Syndrome. AJNR Am J Neuroradiol. 2016 Dec; 37(12):2348-2355. PMID: 27609620.
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    8. Phillips OR, Joshi SH, Squitieri F, Sanchez-Castaneda C, Narr K, Shattuck DW, Caltagirone C, Sabatini U, Di Paola M. Major Superficial White Matter Abnormalities in Huntington's Disease. Front Neurosci. 2016; 10:197. PMID: 27242403.
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    9. Phillips OR, Joshi SH, Piras F, Orfei MD, Iorio M, Narr KL, Shattuck DW, Caltagirone C, Spalletta G, Di Paola M. The superficial white matter in Alzheimer's disease. Hum Brain Mapp. 2016 Apr; 37(4):1321-34. PMID: 26801955.
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    10. Marusak HA, Furman DJ, Kuruvadi N, Shattuck DW, Joshi SH, Joshi AA, Etkin A, Thomason ME. Amygdala responses to salient social cues vary with oxytocin receptor genotype in youth. Neuropsychologia. 2015 Dec; 79(Pt A):1-9. PMID: 26477647.
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    11. Marusak HA, Kuruvadi N, Vila AM, Shattuck DW, Joshi SH, Joshi AA, Jella PK, Thomason ME. Interactive effects of BDNF Val66Met genotype and trauma on limbic brain anatomy in childhood. Eur Child Adolesc Psychiatry. 2016 May; 25(5):509-18. PMID: 26286685.
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    12. Wei M, Joshi AA, Zhang M, Mei L, Manis FR, He Q, Beattie RL, Xue G, Shattuck DW, Leahy RM, Xue F, Houston SM, Chen C, Dong Q, Lu ZL. How age of acquisition influences brain architecture in bilinguals. J Neurolinguistics. 2015 Nov; 36:35-55. PMID: 27695193.
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    13. Chambers MC, Bhushan C, Haldar JP, Leahy RM, Shattuck DW. CORRECTING INHOMOGENEITY-INDUCED DISTORTION IN FMRI USING NON-RIGID REGISTRATION. Proc IEEE Int Symp Biomed Imaging. 2015 Apr; 2015:1364-1367. PMID: 26617955.
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    14. Bhushan C, Haldar JP, Choi S, Joshi AA, Shattuck DW, Leahy RM. Co-registration and distortion correction of diffusion and anatomical images based on inverse contrast normalization. Neuroimage. 2015 Jul 15; 115:269-80. PMID: 25827811.
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    15. Habibi A, Ilari B, Crimi K, Metke M, Kaplan JT, Joshi AA, Leahy RM, Shattuck DW, Choi SY, Haldar JP, Ficek B, Damasio A, Damasio H. An equal start: absence of group differences in cognitive, social, and neural measures prior to music or sports training in children. Front Hum Neurosci. 2014; 8:690. PMID: 25249961.
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    16. Luders E, Sánchez FJ, Tosun D, Shattuck DW, Gaser C, Vilain E, Toga AW. Increased Cortical Thickness in Male-to-Female Transsexualism. J Behav Brain Sci. 2012 Aug; 2(3):357-362. PMID: 23724358.
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    17. Joshi AA, Shattuck DW, Leahy RM. A Method for Automated Cortical Surface Registration and Labeling. Biomed Image Regist Proc. 2012 Jul; 7359:180-189. PMID: 26213720.
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    18. Toga AW, Clark KA, Thompson PM, Shattuck DW, Van Horn JD. Mapping the human connectome. Neurosurgery. 2012 Jul; 71(1):1-5. PMID: 22705717.
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    19. Wheland D, Joshi AA, McMahon KL, Hansell NK, Martin NG, Wright MJ, Thompson PM, Shattuck DW, Leahy RM. Robust Identification of Partial-Correlation Based Networks with Applications to Cortical Thickness Data. Proc IEEE Int Symp Biomed Imaging. 2012 May; 2012:1551-1554. PMID: 26753056.
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    20. Joshi AA, Shattuck DW, Damasio H, Leahy RM. GEODESIC CURVATURE FLOW ON SURFACES FOR AUTOMATIC SULCAL DELINEATION. Proc IEEE Int Symp Biomed Imaging. 2012 May; 2012:430-433. PMID: 26770662.
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    21. Joshi AA, Ashrafulla S, Shattuck DW, Damasio H, Leahy RM. An invariant shape representation using the anisotropic Helmholtz equation. Med Image Comput Comput Assist Interv. 2012; 15(Pt 3):607-14. PMID: 23286181.
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    22. Toga AW, Dinov ID, Thompson PM, Woods RP, Van Horn JD, Shattuck DW, Parker DS. The Center for Computational Biology: resources, achievements, and challenges. J Am Med Inform Assoc. 2012 Mar-Apr; 19(2):202-6. PMID: 22081221.
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    23. Prasad G, Joshi AA, Thompson PM, Toga AW, Shattuck DW, Terzopoulos D. SKULL-STRIPPING WITH DEFORMABLE ORGANISMS. Proc IEEE Int Symp Biomed Imaging. 2011; 1662-1665. PMID: 25277660.
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    24. Joshi AA, Chaudhari AJ, Li C, Dutta J, Cherry SR, Shattuck DW, Toga AW, Leahy RM. DigiWarp: a method for deformable mouse atlas warping to surface topographic data. Phys Med Biol. 2010 Oct 21; 55(20):6197-214. PMID: 20885019.
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    25. Tohka J, Dinov ID, Shattuck DW, Toga AW. Brain MRI tissue classification based on local Markov random fields. Magn Reson Imaging. 2010 May; 28(4):557-73. PMID: 20110151.
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    26. Joshi AA, Pantazis D, Li Q, Damasio H, Shattuck DW, Toga AW, Leahy RM. Sulcal set optimization for cortical surface registration. Neuroimage. 2010 Apr 15; 50(3):950-9. PMID: 20056160.
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    27. Pantazis D, Joshi A, Jiang J, Shattuck DW, Bernstein LE, Damasio H, Leahy RM. Comparison of landmark-based and automatic methods for cortical surface registration. Neuroimage. 2010 Feb 01; 49(3):2479-93. PMID: 19796696.
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    28. Joshi AA, Chaudhari AJ, Li C, Shattuck DW, Dutta J, Leahy RM, Toga AW. POSTURE MATCHING AND ELASTIC REGISTRATION OF A MOUSE ATLAS TO SURFACE TOPOGRAPHY RANGE DATA. Proc IEEE Int Symp Biomed Imaging. 2009 Aug 07; 2009:366-369. PMID: 21072317.
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    29. Joshi A, Pantazis D, Damasio H, Shattuck D, Li Q, Leahy R. Optimization of Landmark Selection for Cortical Surface Registration. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2009 Jun 01; 20-25:699-706. PMID: 20717476.
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    30. Joshi AA, Shattuck DW, Thompson PM, Leahy RM. A parameterization-based numerical method for isotropic and anisotropic diffusion smoothing on non-flat surfaces. IEEE Trans Image Process. 2009 Jun; 18(6):1358-65. PMID: 19423447.
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    31. Hageman NS, Toga AW, Narr KL, Shattuck DW. A diffusion tensor imaging tractography algorithm based on Navier-Stokes fluid mechanics. IEEE Trans Med Imaging. 2009 Mar; 28(3):348-60. PMID: 19244007.
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    32. Chiang MC, Barysheva M, Shattuck DW, Lee AD, Madsen SK, Avedissian C, Klunder AD, Toga AW, McMahon KL, de Zubicaray GI, Wright MJ, Srivastava A, Balov N, Thompson PM. Genetics of brain fiber architecture and intellectual performance. J Neurosci. 2009 Feb 18; 29(7):2212-24. PMID: 19228974.
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    33. Eckstein I, Shattuck DW, Stein JL, McMahon KL, de Zubicaray G, Wright MJ, Thompson PM, Toga AW. Active fibers: matching deformable tract templates to diffusion tensor images. Neuroimage. 2009 Aug; 47 Suppl 2:T82-9. PMID: 19457360.
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    34. Joshi A, Leahy R, Toga AW, Shattuck D. A framework for brain registration via simultaneous surface and volume flow. Inf Process Med Imaging. 2009; 21:576-88. PMID: 19694295.
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    35. Shattuck DW, Joshi AA, Pantazis D, Kan E, Dutton RA, Sowell ER, Thompson PM, Toga AW, Leahy RM. Semi-automated method for delineation of landmarks on models of the cerebral cortex. J Neurosci Methods. 2009 Apr 15; 178(2):385-92. PMID: 19162074.
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    36. Narr KL, Hageman N, Woods RP, Hamilton LS, Clark K, Phillips O, Shattuck DW, Asarnow RF, Toga AW, Nuechterlein KH. Mean diffusivity: a biomarker for CSF-related disease and genetic liability effects in schizophrenia. Psychiatry Res. 2009 Jan 30; 171(1):20-32. PMID: 19081707.
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    37. de Zubicaray GI, Chiang MC, McMahon KL, Shattuck DW, Toga AW, Martin NG, Wright MJ, Thompson PM. Meeting the Challenges of Neuroimaging Genetics. Brain Imaging Behav. 2008 Dec 01; 2(4):258-263. PMID: 20016769.
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    38. Shattuck DW, Prasad G, Mirza M, Narr KL, Toga AW. Online resource for validation of brain segmentation methods. Neuroimage. 2009 Apr 01; 45(2):431-9. PMID: 19073267.
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    39. Shattuck DW, Chiang MC, Barysheva M, McMahon KL, de Zubicaray GI, Meredith M, Wright MJ, Toga AW, Thompson PM. Visualization tools for high angular resolution diffusion imaging. Med Image Comput Comput Assist Interv. 2008; 11(Pt 2):298-305. PMID: 18982618.
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    40. Joshi AA, Shattuck DW, Thompson PM, Leahy RM. Surface-constrained volumetric brain registration using harmonic mappings. IEEE Trans Med Imaging. 2007 Dec; 26(12):1657-69. PMID: 18092736.
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    41. Shattuck DW, Mirza M, Adisetiyo V, Hojatkashani C, Salamon G, Narr KL, Poldrack RA, Bilder RM, Toga AW. Construction of a 3D probabilistic atlas of human cortical structures. Neuroimage. 2008 Feb 01; 39(3):1064-80. PMID: 18037310.
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    42. Joshi AA, Shattuck DW, Thompson PM, Leahy RM. Registration of cortical surfaces using sulcal landmarks for group analysis of MEG data. Int Congr Ser. 2007 Jun 01; 1300:229-232. PMID: 20824115.
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    43. Tohka J, Krestyannikov E, Dinov ID, Graham AM, Shattuck DW, Ruotsalainen U, Toga AW. Genetic algorithms for finite mixture model based voxel classification in neuroimaging. IEEE Trans Med Imaging. 2007 May; 26(5):696-711. PMID: 17518064.
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    44. Sicotte NL, Giesser BS, Tandon V, Klutch R, Steiner B, Drain AE, Shattuck DW, Hull L, Wang HJ, Elashoff RM, Swerdloff RS, Voskuhl RR. Testosterone treatment in multiple sclerosis: a pilot study. Arch Neurol. 2007 May; 64(5):683-8. PMID: 17502467.
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    45. Joshi A, Shattuck D, Thompson P, Leahy R. Brain image registration using cortically constrained harmonic mappings. Inf Process Med Imaging. 2007; 20:359-71. PMID: 17633713.
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    46. Sicotte NL, Salamon G, Shattuck DW, Hageman N, Rüb U, Salamon N, Drain AE, Demer JL, Engle EC, Alger JR, Baloh RW, Deller T, Jen JC. Diffusion tensor MRI shows abnormal brainstem crossing fibers associated with ROBO3 mutations. Neurology. 2006 Aug 08; 67(3):519-21. PMID: 16894121.
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    47. MacKenzie-Graham A, Tinsley MR, Shah KP, Aguilar C, Strickland LV, Boline J, Martin M, Morales L, Shattuck DW, Jacobs RE, Voskuhl RR, Toga AW. Cerebellar cortical atrophy in experimental autoimmune encephalomyelitis. Neuroimage. 2006 Sep; 32(3):1016-23. PMID: 16806982.
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    48. Dinov ID, Valentino D, Shin BC, Konstantinidis F, Hu G, MacKenzie-Graham A, Lee EF, Shattuck D, Ma J, Schwartz C, Toga AW. LONI visualization environment. J Digit Imaging. 2006 Jun; 19(2):148-58. PMID: 16598642.
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    49. Fennema-Notestine C, Ozyurt IB, Clark CP, Morris S, Bischoff-Grethe A, Bondi MW, Jernigan TL, Fischl B, Segonne F, Shattuck DW, Leahy RM, Rex DE, Toga AW, Zou KH, Brown GG. Quantitative evaluation of automated skull-stripping methods applied to contemporary and legacy images: effects of diagnosis, bias correction, and slice location. Hum Brain Mapp. 2006 Feb; 27(2):99-113. PMID: 15986433.
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    50. Dogdas B, Shattuck DW, Leahy RM. Segmentation of skull and scalp in 3-D human MRI using mathematical morphology. Hum Brain Mapp. 2005 Dec; 26(4):273-85. PMID: 15966000.
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    51. Salamon N, Sicotte N, Mongkolwat P, Shattuck D, Salamon G. The human cerebral cortex on MRI: value of the coronal plane. Surg Radiol Anat. 2005 Dec; 27(5):431-43. PMID: 16307199.
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    52. Salamon N, Sicotte N, Alger J, Shattuck D, Perlman S, Sinha U, Schultze-Haakh H, Salamon G. Analysis of the brain-stem white-matter tracts with diffusion tensor imaging. Neuroradiology. 2005 Dec; 47(12):895-902. PMID: 16158279.
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    53. Joshi AA, Shattuck DW, Thompson PM, Leahy RM. A framework for registration, statistical characterization and classification of cortically constrained functional imaging data. Inf Process Med Imaging. 2005; 19:186-96. PMID: 17354695.
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    54. Rex DE, Shattuck DW, Woods RP, Narr KL, Luders E, Rehm K, Stoltzner SE, Stolzner SE, Rottenberg DA, Toga AW. A meta-algorithm for brain extraction in MRI. Neuroimage. 2004 Oct; 23(2):625-37. PMID: 15488412.
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    55. Jen JC, Chan WM, Bosley TM, Wan J, Carr JR, Rüb U, Shattuck D, Salamon G, Kudo LC, Ou J, Lin DD, Salih MA, Kansu T, Al Dhalaan H, Al Zayed Z, MacDonald DB, Stigsby B, Plaitakis A, Dretakis EK, Gottlob I, Pieh C, Traboulsi EI, Wang Q, Wang L, Andrews C, Yamada K, Demer JL, Karim S, Alger JR, Geschwind DH, Deller T, Sicotte NL, Nelson SF, Baloh RW, Engle EC. Mutations in a human ROBO gene disrupt hindbrain axon pathway crossing and morphogenesis. Science. 2004 Jun 04; 304(5676):1509-13. PMID: 15105459.
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    56. Joshi AA, Shattuck DW, Thompson PM, Leahy RM. CORTICAL SURFACE PARAMETERIZATION BY P-HARMONIC ENERGY MINIMIZATION. Proc IEEE Int Symp Biomed Imaging. 2004 Apr 01; 1:428-431. PMID: 20721316.
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    57. MacKenzie-Graham A, Lee EF, Dinov ID, Bota M, Shattuck DW, Ruffins S, Yuan H, Konstantinidis F, Pitiot A, Ding Y, Hu G, Jacobs RE, Toga AW. A multimodal, multidimensional atlas of the C57BL/6J mouse brain. J Anat. 2004 Feb; 204(2):93-102. PMID: 15032916.
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    58. MacKenzie-Graham A, Jones ES, Shattuck DW, Dinov ID, Bota M, Toga AW. The informatics of a C57BL/6J mouse brain atlas. Neuroinformatics. 2003; 1(4):397-410. PMID: 15043223.
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    59. Shattuck DW, Rapela J, Asma E, Chatzioannou A, Qi J, Leahy RM. Internet2-based 3D PET image reconstruction using a PC cluster. Phys Med Biol. 2002 Aug 07; 47(15):2785-95. PMID: 12200939.
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    60. Shattuck DW, Leahy RM. BrainSuite: an automated cortical surface identification tool. Med Image Anal. 2002 Jun; 6(2):129-42. PMID: 12045000.
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    61. Shattuck DW, Leahy RM. Automated graph-based analysis and correction of cortical volume topology. IEEE Trans Med Imaging. 2001 Nov; 20(11):1167-77. PMID: 11700742.
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    62. Hunt SC, Abkevich V, Hensel CH, Gutin A, Neff CD, Russell DL, Tran T, Hong X, Jammulapati S, Riley R, Weaver-Feldhaus J, Macalma T, Richards MM, Gress R, Francis M, Thomas A, Frech GC, Adams TD, Shattuck D, Stone S. Linkage of body mass index to chromosome 20 in Utah pedigrees. Hum Genet. 2001 Sep; 109(3):279-85. PMID: 11702208.
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    63. Arnold JB, Liow JS, Schaper KA, Stern JJ, Sled JG, Shattuck DW, Worth AJ, Cohen MS, Leahy RM, Mazziotta JC, Rottenberg DA. Qualitative and quantitative evaluation of six algorithms for correcting intensity nonuniformity effects. Neuroimage. 2001 May; 13(5):931-43. PMID: 11304088.
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    64. Shattuck DW, Sandor-Leahy SR, Schaper KA, Rottenberg DA, Leahy RM. Magnetic resonance image tissue classification using a partial volume model. Neuroimage. 2001 May; 13(5):856-76. PMID: 11304082.
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