Harold Joseph Pimentel
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Title(s) | Adjunct Instructor, Computational Medicine |
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School | Medicine |
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Address | 612 Charles E. Young Drive, Ea 5303 Los Angeles CA 90024
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vCard | Download vCard |
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Bibliographic
Altmetrics Details
PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media.
(Note that publications are often cited in additional ways that are not shown here.)
Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication.
Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication.
Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.)
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Evolutionary Persistence of DNA Methylation for Millions of Years after Ancient Loss of a De Novo Methyltransferase. Cell. 2020 Feb 20; 180(4):816.
Catania S, Dumesic PA, Pimentel H, Nasif A, Stoddard CI, Burke JE, Diedrich JK, Cooke S, Shea T, Gienger E, Lintner R, Yates JR, Hajkova P, Narlikar GJ, Cuomo CA, Pritchard JK, Madhani HD. PMID: 32084344.
View in: PubMed Mentions: Fields:
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Evolutionary Persistence of DNA Methylation for Millions of Years after Ancient Loss of a De Novo Methyltransferase. Cell. 2020 01 23; 180(2):263-277.e20.
Catania S, Dumesic PA, Pimentel H, Nasif A, Stoddard CI, Burke JE, Diedrich JK, Cook S, Shea T, Geinger E, Lintner R, Yates JR, Hajkova P, Narlikar GJ, Cuomo CA, Pritchard JK, Madhani HD. PMID: 31955845.
View in: PubMed Mentions: 3 Fields: Translation: AnimalsCells
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Intron retention is a source of neoepitopes in cancer. Nat Biotechnol. 2018 12; 36(11):1056-1058.
Smart AC, Margolis CA, Pimentel H, He MX, Miao D, Adeegbe D, Fugmann T, Wong KK, Van Allen EM. PMID: 30114007.
View in: PubMed Mentions: 28 Fields: Translation: HumansCells
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Gene-level differential analysis at transcript-level resolution. Genome Biol. 2018 04 12; 19(1):53.
Yi L, Pimentel H, Bray NL, Pachter L. PMID: 29650040.
View in: PubMed Mentions: 10 Fields: Translation: Animals
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Pseudoalignment for metagenomic read assignment. Bioinformatics. 2017 Jul 15; 33(14):2082-2088.
Schaeffer L, Pimentel H, Bray N, Melsted P, Pachter L. PMID: 28334086.
View in: PubMed Mentions: 9 Fields: Translation: Cells
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Differential analysis of RNA-seq incorporating quantification uncertainty. Nat Methods. 2017 Jul; 14(7):687-690.
Pimentel H, Bray NL, Puente S, Melsted P, Pachter L. PMID: 28581496.
View in: PubMed Mentions: 215 Fields: Translation: Cells
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Zika infection of neural progenitor cells perturbs transcription in neurodevelopmental pathways. PLoS One. 2017; 12(4):e0175744.
Yi L, Pimentel H, Pachter L. PMID: 28448519.
View in: PubMed Mentions: 2 Fields: Translation: HumansCells
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The Lair: a resource for exploratory analysis of published RNA-Seq data. BMC Bioinformatics. 2016 Dec 01; 17(1):490.
Pimentel H, Sturmfels P, Bray N, Melsted P, Pachter L. PMID: 27905880.
View in: PubMed Mentions: 5 Fields: Translation: Humans
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Erratum: Near-optimal probabilistic RNA-seq quantification. Nat Biotechnol. 2016 08 09; 34(8):888.
Bray NL, Pimentel H, Melsted P, Pachter L. PMID: 27504780.
View in: PubMed Mentions: 24 Fields:
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Near-optimal probabilistic RNA-seq quantification. Nat Biotechnol. 2016 05; 34(5):525-7.
Bray NL, Pimentel H, Melsted P, Pachter L. PMID: 27043002.
View in: PubMed Mentions: 1021 Fields:
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A dynamic intron retention program enriched in RNA processing genes regulates gene expression during terminal erythropoiesis. Nucleic Acids Res. 2016 Jan 29; 44(2):838-51.
Pimentel H, Parra M, Gee SL, Mohandas N, Pachter L, Conboy JG. PMID: 26531823.
View in: PubMed Mentions: 54 Fields: Translation: HumansCells
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A dynamic alternative splicing program regulates gene expression during terminal erythropoiesis. Nucleic Acids Res. 2014 Apr; 42(6):4031-42.
Pimentel H, Parra M, Gee S, Ghanem D, An X, Li J, Mohandas N, Pachter L, Conboy JG. PMID: 24442673.
View in: PubMed Mentions: 38 Fields: Translation: HumansCells
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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 2013 Apr 25; 14(4):R36.
Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, Salzberg SL. PMID: 23618408.
View in: PubMed Mentions: 4294 Fields: Translation: HumansCells
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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc. 2012 Mar 01; 7(3):562-78.
Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, Pimentel H, Salzberg SL, Rinn JL, Pachter L. PMID: 22383036.
View in: PubMed Mentions: 4192 Fields:
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Identification of novel transcripts in annotated genomes using RNA-Seq. Bioinformatics. 2011 Sep 01; 27(17):2325-9.
Roberts A, Pimentel H, Trapnell C, Pachter L. PMID: 21697122.
View in: PubMed Mentions: 424 Fields: Translation: HumansAnimals
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Year | Publications |
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2011 | 1 | 2012 | 1 | 2013 | 1 | 2014 | 1 | 2015 | 1 | 2016 | 3 | 2017 | 3 | 2018 | 2 | 2020 | 2 |
This graph shows the number and percent of publications by field.
Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications.
Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written.
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This graph shows the number and percent of publications by field.
Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications.
Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written.
To see the data as text, click here.
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