Aparna Bhaduri

Title(s)Assistant Professor, Biological Chemistry
SchoolMedicine
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    Collapse Research 
    Collapse Research Activities and Funding
    Understanding Brain Development Through the Lens of Metabolism
    NIH R00NS111731Jun 1, 2019 - Mar 31, 2024
    Role: Principal Investigator
    Understanding Brain Development Through the Lens of Metabolism
    NIH K99NS111731Jun 1, 2019 - May 31, 2021
    Role: Principal Investigator
    Using Single-Cell RNA Sequencing to Characterize Regional Differences in Cortical Development
    NIH F32NS103266Aug 1, 2017 - Jul 31, 2019
    Role: Principal Investigator
    SMRT-2 in Epidermal Neoplasia
    NIH F31CA180408Jul 1, 2013 - Jun 30, 2015
    Role: Principal Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Applying single-cell and single-nucleus genomics to studies of cellular heterogeneity and cell fate transitions in the nervous system. Nat Neurosci. 2024 Dec; 27(12):2278-2291. Adameyko I, Bakken T, Bhaduri A, Chhatbar C, Filbin MG, Gate D, Hochgerner H, Kim CN, Krull J, La Manno G, Li Q, Linnarsson S, Ma Q, Mayer C, Menon V, Nano P, Prinz M, Quake S, Walsh CA, Yang J, Bayraktar OA, Gokce O, Habib N, Konopka G, Liddelow SA, Nowakowski TJ. PMID: 39627588.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    2. Perivascular NOTCH3+ Stem Cells Drive Meningioma Tumorigenesis and Resistance to Radiotherapy. Cancer Discov. 2024 Oct 04; 14(10):1823-1837. Choudhury A, Cady MA, Lucas CG, Najem H, Phillips JJ, Palikuqi B, Zakimi N, Joseph T, Birrueta JO, Chen WC, Oberheim Bush NA, Hervey-Jumper SL, Klein OD, Toedebusch CM, Horbinski CM, Magill ST, Bhaduri A, Perry A, Dickinson PJ, Heimberger AB, Ashworth A, Crouch EE, Raleigh DR. PMID: 38742767; PMCID: PMC11452293.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    3. Meningeal solitary fibrous tumor cell states phenocopy cerebral vascular development and homeostasis. Neuro Oncol. 2024 Aug 29. Mirchia K, Choudhury A, Joseph T, Birrueta JO, Phillips JJ, Bhaduri A, Crouch EE, Perry A, Raleigh DR. PMID: 39207122.
      View in: PubMed   Mentions:    Fields:    
    4. Glioblastoma Neurovascular Progenitor Orchestrates Tumor Cell Type Diversity. bioRxiv. 2024 Jul 24. Fazzari E, Azizad DJ, Yu K, Ge W, Li MX, Nano PR, Kan RL, Tum HA, Tse C, Bayley NA, Haka V, Cadet D, Perryman T, Soto JA, Wick B, Raleigh DR, Crouch EE, Patel KS, Liau LM, Deneen B, Nathanson DA, Bhaduri A. PMID: 39091877; PMCID: PMC11291138.
      View in: PubMed   Mentions:
    5. Chimeric brain organoids capture human genetic diversity. Nature. 2024 Jul; 631(8019):32-33. Bhaduri A. PMID: 38926554.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    6. Human-specific paralogs of SRGAP2 induce neotenic features of microglia structural and functional maturation. bioRxiv. 2024 Jun 29. Diaz-Salazar C, Krzisch M, Yoo J, Nano PR, Bhaduri A, Jaenisch R, Polleux F. PMID: 38979266; PMCID: PMC11230448.
      View in: PubMed   Mentions:
    7. Radiation-Induced Cellular Plasticity: A Strategy for Combatting Glioblastoma. bioRxiv. 2024 May 16. He L, Azizad D, Bhat K, Ioannidis A, Hoffmann CJ, Arambula E, Bhaduri A, Kornblum HI, Pajonk F. PMID: 38798647; PMCID: PMC11118449.
      View in: PubMed   Mentions:
    8. Thalamocortical organoids enable in vitro modeling of 22q11.2 microdeletion associated with neuropsychiatric disorders. Cell Stem Cell. 2024 03 07; 31(3):421-432.e8. Shin D, Kim CN, Ross J, Hennick KM, Wu SR, Paranjape N, Leonard R, Wang JC, Keefe MG, Pavlovic BJ, Donohue KC, Moreau C, Wigdor EM, Larson HH, Allen DE, Cadwell CR, Bhaduri A, Popova G, Bearden CE, Pollen AA, Jacquemont S, Sanders SJ, Haussler D, Wiita AP, Frost NA, Sohal VS, Nowakowski TJ. PMID: 38382530; PMCID: PMC10939828.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    9. Profiling human brain vascular cells using single-cell transcriptomics and organoids. Nat Protoc. 2024 Mar; 19(3):603-628. Crouch EE, Diafos LN, Valenzuela EJ, Wedderburn-Pugh K, Birrueta JO, Caston J, Joseph T, Andrews MG, Bhaduri A, Huang EJ. PMID: 38102365.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    10. Single-cell genomics reveals region-specific developmental trajectories underlying neuronal diversity in the human hypothalamus. Sci Adv. 2023 11 10; 9(45):eadf6251. Herb BR, Glover HJ, Bhaduri A, Colantuoni C, Bale TL, Siletti K, Hodge R, Lein E, Kriegstein AR, Doege CA, Ament SA. PMID: 37939194; PMCID: PMC10631741.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCells
    11. Functional genomics and systems biology in human neuroscience. Nature. 2023 Nov; 623(7986):274-282. Konopka G, Bhaduri A. PMID: 37938705; PMCID: PMC11465930.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    12. A Meta-Atlas of the Developing Human Cortex Identifies Modules Driving Cell Subtype Specification. bioRxiv. 2023 Sep 13. Nano PR, Fazzari E, Azizad D, Nguyen CV, Wang S, Kan RL, Wick B, Haeussler M, Bhaduri A. PMID: 37745597; PMCID: PMC10515829.
      View in: PubMed   Mentions: 1  
    13. LIF signaling regulates outer radial glial to interneuron fate during human cortical development. Cell Stem Cell. 2023 10 05; 30(10):1382-1391.e5. Andrews MG, Siebert C, Wang L, White ML, Ross J, Morales R, Donnay M, Bamfonga G, Mukhtar T, McKinney AA, Gemenes K, Wang S, Bi Q, Crouch EE, Parikshak N, Panagiotakos G, Huang E, Bhaduri A, Kriegstein AR. PMID: 37673072; PMCID: PMC10591955.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    14. Meningeal solitary fibrous tumor cell states phenocopy cerebral vascular development and homeostasis. Res Sq. 2023 Jul 26. Raleigh D, Mirchia K, Choudhury A, Joseph T, Birrueta J, Phillips J, Bhaduri A, Crouch E, Perry A. PMID: 37546798; PMCID: PMC10402198.
      View in: PubMed   Mentions:
    15. NOTCH3 drives meningioma tumorigenesis and resistance to radiotherapy. bioRxiv. 2023 Jul 11. Choudhury A, Cady MA, Lucas CG, Najem H, Phillips JJ, Palikuqi B, Zakimi N, Joseph T, Birrueta JO, Chen WC, Bush NAO, Hervey-Jumper SL, Klein OD, Toedebusch CM, Horbinski CM, Magill ST, Bhaduri A, Perry A, Dickinson PJ, Heimberger AB, Ashworth A, Crouch EE, Raleigh DR. PMID: 37503127; PMCID: PMC10369862.
      View in: PubMed   Mentions:
    16. Common molecular features of H3K27M DMGs and PFA ependymomas map to hindbrain developmental pathways. Acta Neuropathol Commun. 2023 02 09; 11(1):25. Pun M, Pratt D, Nano PR, Joshi PK, Jiang L, Englinger B, Rao A, Cieslik M, Chinnaiyan AM, Aldape K, Pfister S, Filbin MG, Bhaduri A, Venneti S. PMID: 36759899; PMCID: PMC9912509.
      View in: PubMed   Mentions: 13     Fields:    Translation:Humans
    17. Ensembles of endothelial and mural cells promote angiogenesis in prenatal human brain. Cell. 2022 09 29; 185(20):3753-3769.e18. Crouch EE, Bhaduri A, Andrews MG, Cebrian-Silla A, Diafos LN, Birrueta JO, Wedderburn-Pugh K, Valenzuela EJ, Bennett NK, Eze UC, Sandoval-Espinosa C, Chen J, Mora C, Ross JM, Howard CE, Gonzalez-Granero S, Lozano JF, Vento M, Haeussler M, Paredes MF, Nakamura K, Garcia-Verdugo JM, Alvarez-Buylla A, Kriegstein AR, Huang EJ. PMID: 36179668; PMCID: PMC9550196.
      View in: PubMed   Mentions: 30     Fields:    Translation:HumansCells
    18. Pathway-based approach reveals differential sensitivity to E2F1 inhibition in glioblastoma. Cancer Res Commun. 2022 09; 2(9):1049-1060. Alvarado AG, Tessema K, Muthukrishnan SD, Sober M, Kawaguchi R, Laks DR, Bhaduri A, Swarup V, Nathanson DA, Geschwind DH, Goldman SA, Kornblum HI. PMID: 36213002; PMCID: PMC9536135.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    19. Molecular profiling of stem cell-derived retinal pigment epithelial cell differentiation established for clinical translation. Stem Cell Reports. 2022 06 14; 17(6):1458-1475. Petrus-Reurer S, Lederer AR, Baqué-Vidal L, Douagi I, Pannagel B, Khven I, Aronsson M, Bartuma H, Wagner M, Wrona A, Efstathopoulos P, Jaberi E, Willenbrock H, Shimizu Y, Villaescusa JC, André H, Sundstr?m E, Bhaduri A, Kriegstein A, Kvanta A, La Manno G, Lanner F. PMID: 35705015; PMCID: PMC9214069.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansAnimalsCells
    20. Evaluation of advances in cortical development using model systems. Dev Neurobiol. 2022 07; 82(5):408-427. Nano PR, Bhaduri A. PMID: 35644985; PMCID: PMC10924780.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimals
    21. Mounting evidence suggests human adult neurogenesis is unlikely. Neuron. 2022 02 02; 110(3):353-355. Nano PR, Bhaduri A. PMID: 35114104.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    22. Cortical Cartography: Mapping Arealization Using Single-Cell Omics Technology. Front Neural Circuits. 2021; 15:788560. Nano PR, Nguyen CV, Mil J, Bhaduri A. PMID: 34955761; PMCID: PMC8707733.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimals
    23. UCSC Cell Browser: visualize your single-cell data. Bioinformatics. 2021 12 07; 37(23):4578-4580. Speir ML, Bhaduri A, Markov NS, Moreno P, Nowakowski TJ, Papatheodorou I, Pollen AA, Raney BJ, Seninge L, Kent WJ, Haeussler M. PMID: 34244710; PMCID: PMC8652023.
      View in: PubMed   Mentions: 92     Fields:    
    24. Identification of Lipid Heterogeneity and Diversity in the Developing Human Brain. JACS Au. 2021 Dec 27; 1(12):2261-2270. Bhaduri A, Neumann EK, Kriegstein AR, Sweedler JV. PMID: 34977897; PMCID: PMC8717369.
      View in: PubMed   Mentions: 14  
    25. An atlas of cortical arealization identifies dynamic molecular signatures. Nature. 2021 10; 598(7879):200-204. Bhaduri A, Sandoval-Espinosa C, Otero-Garcia M, Oh I, Yin R, Eze UC, Nowakowski TJ, Kriegstein AR. PMID: 34616070; PMCID: PMC8494648.
      View in: PubMed   Mentions: 89     Fields:    Translation:HumansCells
    26. Human intermediate progenitor diversity during cortical development. Proc Natl Acad Sci U S A. 2021 06 29; 118(26). Pebworth MP, Ross J, Andrews M, Bhaduri A, Kriegstein AR. PMID: 34155100; PMCID: PMC8256045.
      View in: PubMed   Mentions: 30     Fields:    Translation:HumansCells
    27. Single-cell atlas of early human brain development highlights heterogeneity of human neuroepithelial cells and early radial glia. Nat Neurosci. 2021 04; 24(4):584-594. Eze UC, Bhaduri A, Haeussler M, Nowakowski TJ, Kriegstein AR. PMID: 33723434; PMCID: PMC8012207.
      View in: PubMed   Mentions: 159     Fields:    Translation:HumansAnimalsCells
    28. Single-Cell Analyses Identify Brain Mural Cells Expressing CD19 as Potential Off-Tumor Targets for CAR-T Immunotherapies. Cell. 2020 10 01; 183(1):126-142.e17. Parker KR, Migliorini D, Perkey E, Yost KE, Bhaduri A, Bagga P, Haris M, Wilson NE, Liu F, Gabunia K, Scholler J, Montine TJ, Bhoj VG, Reddy R, Mohan S, Maillard I, Kriegstein AR, June CH, Chang HY, Posey AD, Satpathy AT. PMID: 32961131; PMCID: PMC7640763.
      View in: PubMed   Mentions: 192     Fields:    Translation:HumansAnimalsCells
    29. Are Organoids Ready for Prime Time? Cell Stem Cell. 2020 09 03; 27(3):361-365. Bhaduri A, Andrews MG, Kriegstein AR, Nowakowski TJ. PMID: 32888425; PMCID: PMC7559415.
      View in: PubMed   Mentions: 20     Fields:    Translation:Humans
    30. Origins and Proliferative States of Human Oligodendrocyte Precursor Cells. Cell. 2020 08 06; 182(3):594-608.e11. Huang W, Bhaduri A, Velmeshev D, Wang S, Wang L, Rottkamp CA, Alvarez-Buylla A, Rowitch DH, Kriegstein AR. PMID: 32679030; PMCID: PMC7415734.
      View in: PubMed   Mentions: 88     Fields:    Translation:HumansCells
    31. Cortical Neural Stem Cell Lineage Progression Is Regulated by Extrinsic Signaling Molecule Sonic Hedgehog. Cell Rep. 2020 03 31; 30(13):4490-4504.e4. Zhang Y, Liu G, Guo T, Liang XG, Du H, Yang L, Bhaduri A, Li X, Xu Z, Zhang Z, Li Z, He M, Tsyporin J, Kriegstein AR, Rubenstein JL, Yang Z, Chen B. PMID: 32234482; PMCID: PMC7197103.
      View in: PubMed   Mentions: 30     Fields:    Translation:AnimalsCells
    32. Cell stress in cortical organoids impairs molecular subtype specification. Nature. 2020 02; 578(7793):142-148. Bhaduri A, Andrews MG, Mancia Leon W, Jung D, Shin D, Allen D, Jung D, Schmunk G, Haeussler M, Salma J, Pollen AA, Nowakowski TJ, Kriegstein AR. PMID: 31996853; PMCID: PMC7433012.
      View in: PubMed   Mentions: 245     Fields:    Translation:HumansCells
    33. Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism. Cell. 2020 02 06; 180(3):568-584.e23. Satterstrom FK, Kosmicki JA, Wang J, Breen MS, De Rubeis S, An JY, Peng M, Collins R, Grove J, Klei L, Stevens C, Reichert J, Mulhern MS, Artomov M, Gerges S, Sheppard B, Xu X, Bhaduri A, Norman U, Brand H, Schwartz G, Nguyen R, Guerrero EE, Dias C, Autism Sequencing Consortium, iPSYCH-Broad Consortium, Betancur C, Cook EH, Gallagher L, Gill M, Sutcliffe JS, Thurm A, Zwick ME, Børglum AD, State MW, Cicek AE, Talkowski ME, Cutler DJ, Devlin B, Sanders SJ, Roeder K, Daly MJ, Buxbaum JD. PMID: 31981491; PMCID: PMC7250485.
      View in: PubMed   Mentions: 955     Fields:    Translation:HumansCells
    34. Outer Radial Glia-like Cancer Stem Cells Contribute to Heterogeneity of Glioblastoma. Cell Stem Cell. 2020 01 02; 26(1):48-63.e6. Bhaduri A, Di Lullo E, Jung D, Müller S, Crouch EE, Espinosa CS, Ozawa T, Alvarado B, Spatazza J, Cadwell CR, Wilkins G, Velmeshev D, Liu SJ, Malatesta M, Andrews MG, Mostajo-Radji MA, Huang EJ, Nowakowski TJ, Lim DA, Diaz A, Raleigh DR, Kriegstein AR. PMID: 31901251; PMCID: PMC7029801.
      View in: PubMed   Mentions: 144     Fields:    Translation:HumansCells
    35. Development and Arealization of the Cerebral Cortex. Neuron. 2019 09 25; 103(6):980-1004. Cadwell CR, Bhaduri A, Mostajo-Radji MA, Keefe MG, Nowakowski TJ. PMID: 31557462; PMCID: PMC9245854.
      View in: PubMed   Mentions: 156     Fields:    Translation:HumansAnimalsCells
    36. Neuronal vulnerability and multilineage diversity in multiple sclerosis. Nature. 2019 09; 573(7772):75-82. Schirmer L, Velmeshev D, Holmqvist S, Kaufmann M, Werneburg S, Jung D, Vistnes S, Stockley JH, Young A, Steindel M, Tung B, Goyal N, Bhaduri A, Mayer S, Engler JB, Bayraktar OA, Franklin RJM, Haeussler M, Reynolds R, Schafer DP, Friese MA, Shiow LR, Kriegstein AR, Rowitch DH. PMID: 31316211; PMCID: PMC6731122.
      View in: PubMed   Mentions: 244     Fields:    Translation:HumansAnimalsCells
    37. Single-cell genomics identifies cell type-specific molecular changes in autism. Science. 2019 05 17; 364(6441):685-689. Velmeshev D, Schirmer L, Jung D, Haeussler M, Perez Y, Mayer S, Bhaduri A, Goyal N, Rowitch DH, Kriegstein AR. PMID: 31097668; PMCID: PMC7678724.
      View in: PubMed   Mentions: 389     Fields:    Translation:HumansCells
    38. Multimodal Single-Cell Analysis Reveals Physiological Maturation in the Developing Human Neocortex. Neuron. 2019 04 03; 102(1):143-158.e7. Mayer S, Chen J, Velmeshev D, Mayer A, Eze UC, Bhaduri A, Cunha CE, Jung D, Arjun A, Li E, Alvarado B, Wang S, Lovegren N, Gonzales ML, Szpankowski L, Leyrat A, West JAA, Panagiotakos G, Alvarez-Buylla A, Paredes MF, Nowakowski TJ, Pollen AA, Kriegstein AR. PMID: 30770253; PMCID: PMC7648658.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansAnimalsCells
    39. Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution. Cell. 2019 02 07; 176(4):743-756.e17. Pollen AA, Bhaduri A, Andrews MG, Nowakowski TJ, Meyerson OS, Mostajo-Radji MA, Di Lullo E, Alvarado B, Bedolli M, Dougherty ML, Fiddes IT, Kronenberg ZN, Shuga J, Leyrat AA, West JA, Bershteyn M, Lowe CB, Pavlovic BJ, Salama SR, Haussler D, Eichler EE, Kriegstein AR. PMID: 30735633; PMCID: PMC6544371.
      View in: PubMed   Mentions: 261     Fields:    Translation:HumansAnimalsCells
    40. Shared and derived features of cellular diversity in the human cerebral cortex. Curr Opin Neurobiol. 2019 06; 56:117-124. Miller DJ, Bhaduri A, Sestan N, Kriegstein A. PMID: 30677551; PMCID: PMC6996583.
      View in: PubMed   Mentions: 40     Fields:    Translation:HumansAnimalsCells
    41. Neuroserpin expression during human brain development and in adult brain revealed by immunohistochemistry and single cell RNA sequencing. J Anat. 2019 09; 235(3):543-554. Adorjan I, Tyler T, Bhaduri A, Demharter S, Finszter CK, Bako M, Sebok OM, Nowakowski TJ, Khodosevich K, Møllgård K, Kriegstein AR, Shi L, Hoerder-Suabedissen A, Ansorge O, Molnár Z. PMID: 30644551; PMCID: PMC6704272.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    42. Single-cell sequencing paints diverse pictures of the brain. Nature. 2018 11; 563(7729):38-39. Bhaduri A, Nowakowski TJ. PMID: 30382219.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    43. Identification of cell types in a mouse brain single-cell atlas using low sampling coverage. BMC Biol. 2018 10 11; 16(1):113. Bhaduri A, Nowakowski TJ, Pollen AA, Kriegstein AR. PMID: 30309354; PMCID: PMC6180488.
      View in: PubMed   Mentions: 8     Fields:    Translation:Animals
    44. Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis. Cell. 2018 05 31; 173(6):1356-1369.e22. Fiddes IT, Lodewijk GA, Mooring M, Bosworth CM, Ewing AD, Mantalas GL, Novak AM, van den Bout A, Bishara A, Rosenkrantz JL, Lorig-Roach R, Field AR, Haeussler M, Russo L, Bhaduri A, Nowakowski TJ, Pollen AA, Dougherty ML, Nuttle X, Addor MC, Zwolinski S, Katzman S, Kriegstein A, Eichler EE, Salama SR, Jacobs FMJ, Haussler D. PMID: 29856954; PMCID: PMC5986104.
      View in: PubMed   Mentions: 221     Fields:    Translation:HumansAnimalsCells
    45. Single-cell profiling of human gliomas reveals macrophage ontogeny as a basis for regional differences in macrophage activation in the tumor microenvironment. Genome Biol. 2017 Dec 20; 18(1):234. Müller S, Kohanbash G, Liu SJ, Alvarado B, Carrera D, Bhaduri A, Watchmaker PB, Yagnik G, Di Lullo E, Malatesta M, Amankulor NM, Kriegstein AR, Lim DA, Aghi M, Okada H, Diaz A. PMID: 29262845; PMCID: PMC5738907.
      View in: PubMed   Mentions: 337     Fields:    Translation:HumansAnimalsCells
    46. Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex. Science. 2017 12 08; 358(6368):1318-1323. Nowakowski TJ, Bhaduri A, Pollen AA, Alvarado B, Mostajo-Radji MA, Di Lullo E, Haeussler M, Sandoval-Espinosa C, Liu SJ, Velmeshev D, Ounadjela JR, Shuga J, Wang X, Lim DA, West JA, Leyrat AA, Kent WJ, Kriegstein AR. PMID: 29217575; PMCID: PMC5991609.
      View in: PubMed   Mentions: 420     Fields:    Translation:HumansCells
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