Joshua John Breunig

Title(s)Associate Adjunct Professor, Medicine
SchoolMedicine
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    GESTALT Barcoding and Single-cell Transcriptomics of Tumor Cell Evolution in Personalized Tumor Models
    NIH R33CA236687Apr 11, 2019 - Mar 31, 2022
    Role: Principal Investigator
    Direct Differentiations of iPSCs: an Autologous and Scalable Source of Striatal Medium Spiny Neurons for Cellular Transplantation Therapy
    NIH R03NS101529Jun 1, 2017 - Sep 30, 2020
    Role: Principal Investigator
    A Genetic Toolbox for the Identification and Interrogation of Tumor Cells of Origin, Propagation, and Recurrence From Patient-derived Oncogenic Drivers
    NIH R33CA202900May 1, 2016 - Apr 30, 2019
    Role: Principal Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Integrated single-cell transcriptome analysis reveals heterogeneity of esophageal squamous cell carcinoma microenvironment. Nat Commun. 2021 12 17; 12(1):7335. Dinh HQ, Pan F, Wang G, Huang QF, Olingy CE, Wu ZY, Wang SH, Xu X, Xu XE, He JZ, Yang Q, Orsulic S, Haro M, Li LY, Huang GW, Breunig JJ, Koeffler HP, Hedrick CC, Xu LY, Lin DC, Li EM. PMID: 34921160; PMCID: PMC8683407.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    2. Neurosurgery at the crossroads of immunology and nanotechnology. New reality in the COVID-19 pandemic. Adv Drug Deliv Rev. 2022 02; 181:114033. Ljubimov VA, Ramesh A, Davani S, Danielpour M, Breunig JJ, Black KL. PMID: 34808227; PMCID: PMC8604570.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsPHPublic Health
    3. In vivo discovery of RNA proximal proteins via proximity-dependent biotinylation. RNA Biol. 2021 12; 18(12):2203-2217. Lin X, Fonseca MAS, Breunig JJ, Corona RI, Lawrenson K. PMID: 34006179; PMCID: PMC8648264.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    4. RELA Fusion-Positive Ependymoma in a Child with Down Syndrome: A Case Report. Pediatr Neurosurg. 2021; 56(2):146-151. Chan JL, Kashanian A, Bannykh SI, Majlessipour F, Breunig JJ, Danielpour M. PMID: 33690230.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    5. A Transcriptional Regulatory Loop of Master Regulator Transcription Factors, PPARG, and Fatty Acid Synthesis Promotes Esophageal Adenocarcinoma. Cancer Res. 2021 03 01; 81(5):1216-1229. Ma S, Zhou B, Yang Q, Pan Y, Yang W, Freedland SJ, Ding LW, Freeman MR, Breunig JJ, Bhowmick NA, Pan J, Koeffler HP, Lin DC. PMID: 33402390; PMCID: PMC8026506.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    6. Preparation, Assembly, and Transduction of Transgenic Elements Using Mosaic Analysis with Dual Recombinases (MADR). STAR Protoc. 2020 12 18; 1(3):100199. Rincon Fernandez Pacheco D, Sabet S, Breunig JJ. PMID: 33377093; PMCID: PMC7757563.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    7. Splicing machinery dysregulation drives glioblastoma development/aggressiveness: oncogenic role of SRSF3. Brain. 2020 12 05; 143(11):3273-3293. Fuentes-Fayos AC, Vázquez-Borrego MC, Jiménez-Vacas JM, Bejarano L, Pedraza-Arévalo S, L-López F, Blanco-Acevedo C, Sánchez-Sánchez R, Reyes O, Ventura S, Solivera J, Breunig JJ, Blasco MA, Gahete MD, Castaño JP, Luque RM. PMID: 33141183; PMCID: PMC7904102.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansCells
    8. De Novo Generation of Murine and Human MADR Recipient Cell Lines for Locus-Specific, Stable Integration of Transgenic Elements. STAR Protoc. 2020 12 18; 1(3):100184. Ayala-Sarmiento AE, Kobritz N, Breunig JJ. PMID: 33377078; PMCID: PMC7757409.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    9. Rapid Generation of Somatic Mouse Mosaics with Locus-Specific, Stably Integrated Transgenic Elements. Cell. 2019 09 19; 179(1):251-267.e24. Kim GB, Rincon Fernandez Pacheco D, Saxon D, Yang A, Sabet S, Dutra-Clarke M, Levy R, Watkins A, Park H, Abbasi Akhtar A, Linesch PW, Kobritz N, Chandra SS, Grausam K, Ayala-Sarmiento A, Molina J, Sedivakova K, Hoang K, Tsyporin J, Gareau DS, Filbin MG, Bannykh S, Santiskulvong C, Wang Y, Tang J, Suva ML, Chen B, Danielpour M, Breunig JJ. PMID: 31539496; PMCID: PMC6934691.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansAnimalsCells
    10. Glioma cell proliferation is enhanced in the presence of tumor-derived cilia vesicles. Cilia. 2018; 7:6. Hoang-Minh LB, Dutra-Clarke M, Breunig JJ, Sarkisian MR. PMID: 30410731; PMCID: PMC6219037.
      View in: PubMed   Mentions: 10  
    11. Inflammation-induced Gro1 triggers senescence in neuronal progenitors: effects of estradiol. J Neuroinflammation. 2018 Sep 11; 15(1):260. Zonis S, Breunig JJ, Mamelak A, Wawrowsky K, Bresee C, Ginzburg N, Chesnokova V. PMID: 30201019; PMCID: PMC6131894.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    12. In utero electroporation-based translating ribosome affinity purification identifies age-dependent mRNA expression in cortical pyramidal neurons. Neurosci Res. 2019 Jun; 143:44-52. Huang T, Nguyen LH, Lin TV, Gong X, Zhang L, Kim GB, Sarkisian MR, Breunig JJ, Bordey A. PMID: 29857015; PMCID: PMC6265126.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    13. Inducible Expression of GDNF in Transplanted iPSC-Derived Neural Progenitor Cells. Stem Cell Reports. 2018 06 05; 10(6):1696-1704. Akhtar AA, Gowing G, Kobritz N, Savinoff SE, Garcia L, Saxon D, Cho N, Kim G, Tom CM, Park H, Lawless G, Shelley BC, Mattis VB, Breunig JJ, Svendsen CN. PMID: 29706501; PMCID: PMC5989694.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansAnimalsCells
    14. Metabolic characterization of isocitrate dehydrogenase (IDH) mutant and IDH wildtype gliomaspheres uncovers cell type-specific vulnerabilities. Cancer Metab. 2018; 6:4. Garrett M, Sperry J, Braas D, Yan W, Le TM, Mottahedeh J, Ludwig K, Eskin A, Qin Y, Levy R, Breunig JJ, Pajonk F, Graeber TG, Radu CG, Christofk H, Prins RM, Lai A, Liau LM, Coppola G, Kornblum HI. PMID: 29692895; PMCID: PMC5905129.
      View in: PubMed   Mentions: 25  
    15. Tetracycline-Inducible and Reversible Stable Gene Expression in Human iPSC-Derived Neural Progenitors and in the Postnatal Mouse Brain. Curr Protoc Stem Cell Biol. 2017 May 16; 41:5A.9.1-5A.9.12. Akhtar AA, Breunig JJ. PMID: 28510333; PMCID: PMC5458779.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    16. Lethal Giant Lineage Tracing: Mutating Locally, Acting Globally. Neuron. 2017 May 03; 94(3):417-420. Akhtar AA, Park H, Breunig JJ. PMID: 28472645.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    17. Organoid and Organ-On-A-Chip Systems: New Paradigms for Modeling Neurological and Gastrointestinal Disease. Curr Stem Cell Rep. 2017 Jun; 3(2):98-111. Akhtar AA, Sances S, Barrett R, Breunig JJ. PMID: 28983454; PMCID: PMC5624725.
      View in: PubMed   Mentions: 6  
    18. BCL6 promotes glioma and serves as a therapeutic target. Proc Natl Acad Sci U S A. 2017 04 11; 114(15):3981-3986. Xu L, Chen Y, Dutra-Clarke M, Mayakonda A, Hazawa M, Savinoff SE, Doan N, Said JW, Yong WH, Watkins A, Yang H, Ding LW, Jiang YY, Tyner JW, Ching J, Kovalik JP, Madan V, Chan SL, Müschen M, Breunig JJ, Lin DC, Koeffler HP. PMID: 28356518; PMCID: PMC5393201.
      View in: PubMed   Mentions: 27     Fields:    Translation:HumansAnimalsCells
    19. Ets Factors Regulate Neural Stem Cell Depletion and Gliogenesis in Ras Pathway Glioma. Cell Rep. 2016 12 20; 17(12):3407. Breunig JJ, Levy R, Antonuk CD, Molina J, Dutra-Clarke M, Park H, Akhtar AA, Kim GB, Town T, Hu X, Bannykh SI, Verhaak RGW, Danielpour M. PMID: 28009307.
      View in: PubMed   Mentions: 4     Fields:    
    20. Disruption of KIF3A in patient-derived glioblastoma cells: effects on ciliogenesis, hedgehog sensitivity, and tumorigenesis. Oncotarget. 2016 Feb 09; 7(6):7029-43. Hoang-Minh LB, Deleyrolle LP, Siebzehnrubl D, Ugartemendia G, Futch H, Griffith B, Breunig JJ, De Leon G, Mitchell DA, Semple-Rowland S, Reynolds BA, Sarkisian MR. PMID: 26760767; PMCID: PMC4872766.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansAnimalsCells
    21. In Vivo CRISPR/Cas9 Gene Editing Corrects Retinal Dystrophy in the S334ter-3 Rat Model of Autosomal Dominant Retinitis Pigmentosa. Mol Ther. 2016 Mar; 24(3):556-63. Bakondi B, Lv W, Lu B, Jones MK, Tsai Y, Kim KJ, Levy R, Akhtar AA, Breunig JJ, Svendsen CN, Wang S. PMID: 26666451; PMCID: PMC4786918.
      View in: PubMed   Mentions: 127     Fields:    Translation:HumansAnimalsCells
    22. Ets Factors Regulate Neural Stem Cell Depletion and Gliogenesis in Ras Pathway Glioma. Cell Rep. 2015 Jul 14; 12(2):258-71. Breunig JJ, Levy R, Antonuk CD, Molina J, Dutra-Clarke M, Park H, Akhtar AA, Kim GB, Hu X, Bannykh SI, Verhaak RG, Danielpour M. PMID: 26146073.
      View in: PubMed   Mentions: 28     Fields:    Translation:AnimalsCells
    23. Lost highway(s): barriers to postnatal cortical neurogenesis and implications for brain repair. Front Cell Neurosci. 2015; 9:216. Akhtar AA, Breunig JJ. PMID: 26136658; PMCID: PMC4468390.
      View in: PubMed   Mentions: 2  
    24. A transposon-mediated system for flexible control of transgene expression in stem and progenitor-derived lineages. Stem Cell Reports. 2015 Mar 10; 4(3):323-31. Akhtar AA, Molina J, Dutra-Clarke M, Kim GB, Levy R, Schreiber-Stainthorp W, Danielpour M, Breunig JJ. PMID: 25702640; PMCID: PMC4375828.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCells
    25. Mutations within the pathogenic region of herpes simplex virus 1 gK signal sequences alter cell surface expression and neurovirulence. J Virol. 2015 Mar; 89(5):2530-42. Matundan HH, Mott KR, Akhtar AA, Breunig JJ, Ghiasi H. PMID: 25505072; PMCID: PMC4325753.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    26. T-cell TGF-β signaling abrogation restricts medulloblastoma progression. Proc Natl Acad Sci U S A. 2014 Aug 19; 111(33):E3458-66. Gate D, Danielpour M, Rodriguez J, Kim GB, Levy R, Bannykh S, Breunig JJ, Kaech SM, Flavell RA, Town T. PMID: 25082897; PMCID: PMC4143044.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    27. Neonatal pial surface electroporation. J Vis Exp. 2014 May 07; (87). Levy R, Molina J, Danielpour M, Breunig JJ. PMID: 24836046; PMCID: PMC4173822.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    28. Brain injury, neuroinflammation and Alzheimer's disease. Front Aging Neurosci. 2013; 5:26. Breunig JJ, Guillot-Sestier MV, Town T. PMID: 23874297; PMCID: PMC3708131.
      View in: PubMed   Mentions: 46  
    29. A transgenic Alzheimer rat with plaques, tau pathology, behavioral impairment, oligomeric aβ, and frank neuronal loss. J Neurosci. 2013 Apr 10; 33(15):6245-56. Cohen RM, Rezai-Zadeh K, Weitz TM, Rentsendorj A, Gate D, Spivak I, Bholat Y, Vasilevko V, Glabe CG, Breunig JJ, Rakic P, Davtyan H, Agadjanyan MG, Kepe V, Barrio JR, Bannykh S, Szekely CA, Pechnick RN, Town T. PMID: 23575824; PMCID: PMC3720142.
      View in: PubMed   Mentions: 146     Fields:    Translation:HumansAnimals
    30. Arborization of dendrites by developing neocortical neurons is dependent on primary cilia and type 3 adenylyl cyclase. J Neurosci. 2013 Feb 06; 33(6):2626-38. Guadiana SM, Semple-Rowland S, Daroszewski D, Madorsky I, Breunig JJ, Mykytyn K, Sarkisian MR. PMID: 23392690; PMCID: PMC6619186.
      View in: PubMed   Mentions: 54     Fields:    Translation:AnimalsCells
    31. Rapid genetic targeting of pial surface neural progenitors and immature neurons by neonatal electroporation. Neural Dev. 2012 Jul 10; 7:26. Breunig JJ, Gate D, Levy R, Rodriguez J, Kim GB, Danielpour M, Svendsen CN, Town T. PMID: 22776033; PMCID: PMC3479020.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    32. Basic biology and mechanisms of neural ciliogenesis and the B9 family. Mol Neurobiol. 2012 Jun; 45(3):564-70. Gate D, Danielpour M, Levy R, Breunig JJ, Town T. PMID: 22644387.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCells
    33. Development and distribution of neuronal cilia in mouse neocortex. J Comp Neurol. 2012 Mar 01; 520(4):848-73. Arellano JI, Guadiana SM, Breunig JJ, Rakic P, Sarkisian MR. PMID: 22020803; PMCID: PMC3325766.
      View in: PubMed   Mentions: 45     Fields:    Translation:AnimalsCells
    34. FGF signaling expands embryonic cortical surface area by regulating Notch-dependent neurogenesis. J Neurosci. 2011 Oct 26; 31(43):15604-17. Rash BG, Lim HD, Breunig JJ, Vaccarino FM. PMID: 22031906; PMCID: PMC3235689.
      View in: PubMed   Mentions: 44     Fields:    Translation:AnimalsCells
    35. Neural stem cells: historical perspective and future prospects. Neuron. 2011 May 26; 70(4):614-25. Breunig JJ, Haydar TF, Rakic P. PMID: 21609820; PMCID: PMC3225274.
      View in: PubMed   Mentions: 62     Fields:    Translation:HumansAnimalsCells
    36. Coordinating migratory neuron polarization by numb-ing communication. Dev Cell. 2011 May 17; 20(5):578-80. Breunig JJ, Rakic P. PMID: 21571215.
      View in: PubMed   Mentions: 1     Fields:    
    37. Not(ch) just development: Notch signalling in the adult brain. Nat Rev Neurosci. 2011 May; 12(5):269-83. Ables JL, Breunig JJ, Eisch AJ, Rakic P. PMID: 21505516; PMCID: PMC3159580.
      View in: PubMed   Mentions: 208     Fields:    Translation:HumansAnimalsCells
    38. Failed cytokinesis of neural progenitors in citron kinase-deficient rats leads to multiciliated neurons. Cereb Cortex. 2011 Feb; 21(2):338-44. Anastas SB, Mueller D, Semple-Rowland SL, Breunig JJ, Sarkisian MR. PMID: 20525772.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    39. Cilia in the brain: going with the flow. Nat Neurosci. 2010 Jun; 13(6):654-5. Breunig JJ, Arellano JI, Rakic P. PMID: 20498683.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    40. Profiling identifies precursor suspects: notch family again! Cell Stem Cell. 2010 May 07; 6(5):401-2. Breunig JJ, Rakic P. PMID: 20452310; PMCID: PMC3159579.
      View in: PubMed   Mentions: 1     Fields:    
    41. Decision by division: making cortical maps. Trends Neurosci. 2009 May; 32(5):291-301. Rakic P, Ayoub AE, Breunig JJ, Dominguez MH. PMID: 19380167; PMCID: PMC3601545.
      View in: PubMed   Mentions: 112     Fields:    Translation:HumansAnimalsCells
    42. Primary cilia regulate hippocampal neurogenesis by mediating sonic hedgehog signaling. Proc Natl Acad Sci U S A. 2008 Sep 02; 105(35):13127-32. Breunig JJ, Sarkisian MR, Arellano JI, Morozov YM, Ayoub AE, Sojitra S, Wang B, Flavell RA, Rakic P, Town T. PMID: 18728187; PMCID: PMC2529104.
      View in: PubMed   Mentions: 145     Fields:    Translation:AnimalsCells
    43. The stumpy gene is required for mammalian ciliogenesis. Proc Natl Acad Sci U S A. 2008 Feb 26; 105(8):2853-8. Town T, Breunig JJ, Sarkisian MR, Spilianakis C, Ayoub AE, Liu X, Ferrandino AF, Gallagher AR, Li MO, Rakic P, Flavell RA. PMID: 18287022; PMCID: PMC2268549.
      View in: PubMed   Mentions: 49     Fields:    Translation:AnimalsCells
    44. Everything that glitters isn't gold: a critical review of postnatal neural precursor analyses. Cell Stem Cell. 2007 Dec 13; 1(6):612-27. Breunig JJ, Arellano JI, Macklis JD, Rakic P. PMID: 18371403.
      View in: PubMed   Mentions: 65     Fields:    Translation:HumansAnimalsCells
    45. Notch regulates cell fate and dendrite morphology of newborn neurons in the postnatal dentate gyrus. Proc Natl Acad Sci U S A. 2007 Dec 18; 104(51):20558-63. Breunig JJ, Silbereis J, Vaccarino FM, Sestan N, Rakic P. PMID: 18077357; PMCID: PMC2154470.
      View in: PubMed   Mentions: 176     Fields:    Translation:AnimalsCells
    46. Numb and Numbl are required for maintenance of cadherin-based adhesion and polarity of neural progenitors. Nat Neurosci. 2007 Jul; 10(7):819-27. Rasin MR, Gazula VR, Breunig JJ, Kwan KY, Johnson MB, Liu-Chen S, Li HS, Jan LY, Jan YN, Rakic P, Sestan N. PMID: 17589506.
      View in: PubMed   Mentions: 162     Fields:    Translation:HumansAnimalsCells
    47. The pRb/E2F cell-cycle pathway mediates cell death in Parkinson's disease. Proc Natl Acad Sci U S A. 2007 Feb 27; 104(9):3585-90. Höglinger GU, Breunig JJ, Depboylu C, Rouaux C, Michel PP, Alvarez-Fischer D, Boutillier AL, Degregori J, Oertel WH, Rakic P, Hirsch EC, Hunot S. PMID: 17360686; PMCID: PMC1805567.
      View in: PubMed   Mentions: 113     Fields:    Translation:HumansAnimalsCells
    48. Glowing green pyramids: a false positive for neocortical neurogenesis reveals a novel neuronal-microglial fusion in the postnatal brain. J Neurosci. 2007 Feb 14; 27(7):1507-8. Breunig JJ, Arellano JI. PMID: 17304702; PMCID: PMC6673745.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    49. Nestin-CreER mice reveal DNA synthesis by nonapoptotic neurons following cerebral ischemia hypoxia. Cereb Cortex. 2007 Nov; 17(11):2585-92. Burns KA, Ayoub AE, Breunig JJ, Adhami F, Weng WL, Colbert MC, Rakic P, Kuan CY. PMID: 17259645.
      View in: PubMed   Mentions: 43     Fields:    Translation:AnimalsCells
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