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Speier, William F

Title(s)Assistant Adjunct Professor, Radiological Sciences
Phone310-794-3539
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Sohn A, Speier W, Lan E, Aoki K, Fonarow G, Ong M, Arnold C. Assessment of Heart Failure Patients' Interest in Mobile Health Apps for Self-Care: Survey Study. JMIR Cardio. 2019 Oct 29; 3(2):e14332. PMID: 31758788.
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    2. Shufelt C, Dzubur E, Joung S, Fuller G, Mouapi KN, Van Den Broek I, Lopez M, Dhawan S, Arnold CW, Speier W, Mastali M, Fu Q, Van Eyk JE, Spiegel B, Merz CNB. A protocol integrating remote patient monitoring patient reported outcomes and cardiovascular biomarkers. NPJ Digit Med. 2019; 2:84. PMID: 31508495.
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    3. Meng Y, Speier W, Shufelt C, Joung S, E Van Eyk J, Bairey Merz CN, Lopez M, Spiegel B, Arnold CW. A Machine Learning Approach to Classifying Self-Reported Health Status in a Cohort of Patients With Heart Disease Using Activity Tracker Data. IEEE J Biomed Health Inform. 2020 Mar; 24(3):878-884. PMID: 31199276.
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    4. Ho KC, Scalzo F, Sarma KV, Speier W, El-Saden S, Arnold C. Predicting ischemic stroke tissue fate using a deep convolutional neural network on source magnetic resonance perfusion images. J Med Imaging (Bellingham). 2019 Apr; 6(2):026001. PMID: 31131293.
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    5. Ho KC, Speier W, Zhang H, Scalzo F, El-Saden S, Arnold CW. A Machine Learning Approach for Classifying Ischemic Stroke Onset Time From Imaging. IEEE Trans Med Imaging. 2019 07; 38(7):1666-1676. PMID: 30802855.
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    6. Speier W, Dzubur E, Zide M, Shufelt C, Joung S, Van Eyk JE, Bairey Merz CN, Lopez M, Spiegel B, Arnold C. Evaluating utility and compliance in a patient-based eHealth study using continuous-time heart rate and activity trackers. J Am Med Inform Assoc. 2018 10 01; 25(10):1386-1391. PMID: 29850807.
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    7. Li J, Speier W, Ho KC, Sarma KV, Gertych A, Knudsen BS, Arnold CW. An EM-based semi-supervised deep learning approach for semantic segmentation of histopathological images from radical prostatectomies. Comput Med Imaging Graph. 2018 11; 69:125-133. PMID: 30243216.
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    8. Neufeld EV, Dolezal BA, Speier W, Cooper CB. Effect of altering breathing frequency on maximum voluntary ventilation in healthy adults. BMC Pulm Med. 2018 May 24; 18(1):89. PMID: 29793460.
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    9. Matiasz NJ, Wood J, Doshi P, Speier W, Beckemeyer B, Wang W, Hsu W, Silva AJ. ResearchMaps.org for integrating and planning research. PLoS One. 2018; 13(5):e0195271. PMID: 29723213.
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    10. Ho KC, Speier W, El-Saden S, Arnold CW. Classifying Acute Ischemic Stroke Onset Time using Deep Imaging Features. AMIA Annu Symp Proc. 2017; 2017:892-901. PMID: 29854156.
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    11. Speier W, Arnold C, Chandravadia N, Roberts D, Pendekanti S, Pouratian N. Improving P300 Spelling Rate using Language Models and Predictive Spelling. Brain Comput Interfaces (Abingdon). 2018; 5(1):13-22. PMID: 30560145.
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    12. Tsolaki E, Downes A, Speier W, Elias WJ, Pouratian N. The potential value of probabilistic tractography-based for MR-guided focused ultrasound thalamotomy for essential tremor. Neuroimage Clin. 2018; 17:1019-1027. PMID: 29527503.
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    13. Hollada JL, Zide M, Speier W, Roter DL. Readability Assessment of Patient-Centered should be capitalized entered Outcomes Research Institute Public Abstracts in Relation to Accessibility. Epidemiology. 2017 07; 28(4):e37-e38. PMID: 28282340.
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    14. Speier W, Deshpande A, Cui L, Chandravadia N, Roberts D, Pouratian N. A comparison of stimulus types in online classification of the P300 speller using language models. PLoS One. 2017; 12(4):e0175382. PMID: 28406932.
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    15. Speier W, Chandravadia N, Roberts D, Pendekanti S, Pouratian N. Online BCI Typing using Language Model Classifiers by ALS Patients in their Homes. Brain Comput Interfaces (Abingdon). 2017; 4(1-2):114-121. PMID: 29051907.
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    16. Speier W, Arnold C, Pouratian N. Integrating language models into classifiers for BCI communication: a review. J Neural Eng. 2016 06; 13(3):031002. PMID: 27153565.
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    17. Speier W, Ong MK, Arnold CW. Using phrases and document metadata to improve topic modeling of clinical reports. J Biomed Inform. 2016 06; 61:260-6. PMID: 27109931.
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    18. Arnold CW, Oh A, Chen S, Speier W. Evaluating topic model interpretability from a primary care physician perspective. Comput Methods Programs Biomed. 2016 Feb; 124:67-75. PMID: 26614020.
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    19. Hollada J, Speier W, Oshiro T, Marzan-McGill R, Ruehm SG, Bassett LW, Wells C. Patients' Perceptions of Radiation Exposure Associated With Mammography. AJR Am J Roentgenol. 2015 Jul; 205(1):215-21. PMID: 26102402.
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    20. Speier W, Arnold CW, Deshpande A, Knall J, Pouratian N. Incorporating advanced language models into the P300 speller using particle filtering. J Neural Eng. 2015 Aug; 12(4):046018. PMID: 26061188.
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    21. Mostafavi L, Marfori W, Arellano C, Tognolini A, Speier W, Adibi A, Ruehm SG. Prevalence of coronary artery disease evaluated by coronary CT angiography in women with mammographically detected breast arterial calcifications. PLoS One. 2015; 10(4):e0122289. PMID: 25856075.
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    22. Singleton KW, Speier W, Bui AA, Hsu W. Motivating the additional use of external validity: examining transportability in a model of glioblastoma multiforme. AMIA Annu Symp Proc. 2014; 2014:1930-9. PMID: 25954466.
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    23. Ho KC, Speier W, El-Saden S, Liebeskind DS, Saver JL, Bui AA, Arnold CW. Predicting discharge mortality after acute ischemic stroke using balanced data. AMIA Annu Symp Proc. 2014; 2014:1787-96. PMID: 25954451.
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    24. Speier W, Deshpande A, Pouratian N. A method for optimizing EEG electrode number and configuration for signal acquisition in P300 speller systems. Clin Neurophysiol. 2015 Jun; 126(6):1171-1177. PMID: 25316166.
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    25. Speier W, Arnold C, Lu J, Deshpande A, Pouratian N. Integrating language information with a hidden Markov model to improve communication rate in the P300 speller. IEEE Trans Neural Syst Rehabil Eng. 2014 May; 22(3):678-84. PMID: 24760927.
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    26. Hollada J, Marfori W, Tognolini A, Speier W, Ristow L, Ruehm SG. Successful patient recruitment in CT imaging clinical trials: what factors influence patient participation? Acad Radiol. 2014 Jan; 21(1):52-7. PMID: 24331264.
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    27. Speier W, Arnold C, Pouratian N. Evaluating true BCI communication rate through mutual information and language models. PLoS One. 2013; 8(10):e78432. PMID: 24167623.
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    28. Speier W, Fried I, Pouratian N. Improved P300 speller performance using electrocorticography, spectral features, and natural language processing. Clin Neurophysiol. 2013 Jul; 124(7):1321-8. PMID: 23465430.
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    29. Hsu W, Speier W, Taira RK. Automated extraction of reported statistical analyses: towards a logical representation of clinical trial literature. AMIA Annu Symp Proc. 2012; 2012:350-9. PMID: 23304305.
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    30. Speier W, Ochs MF. Updating annotations with the distributed annotation system and the automated sequence annotation pipeline. Bioinformatics. 2012 Nov 01; 28(21):2858-9. PMID: 22945787.
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    31. Lu J, Speier W, Hu X, Pouratian N. The effects of stimulus timing features on P300 speller performance. Clin Neurophysiol. 2013 Feb; 124(2):306-14. PMID: 22939456.
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    32. Speier W, Arnold C, Lu J, Taira RK, Pouratian N. Natural language processing with dynamic classification improves P300 speller accuracy and bit rate. J Neural Eng. 2012 Feb; 9(1):016004. PMID: 22156110.
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    33. Favorov A, Lvovs D, Speier W, Parmigiani G, Ochs MF. OnionTree XML: a format to exchange gene-related probabilities. J Biomol Struct Dyn. 2011 Oct; 29(2):417-23. PMID: 21875159.
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    34. Speier W, Iglesias JE, El-Kara L, Tu Z, Arnold C. Robust skull stripping of clinical glioblastoma multiforme data. Med Image Comput Comput Assist Interv. 2011; 14(Pt 3):659-66. PMID: 22003756.
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    35. Yu Z, Weinberger PM, Sasaki C, Egleston BL, Speier WF, Haffty B, Kowalski D, Camp R, Rimm D, Vairaktaris E, Burtness B, Psyrri A. Phosphorylation of Akt (Ser473) predicts poor clinical outcome in oropharyngeal squamous cell cancer. Cancer Epidemiol Biomarkers Prev. 2007 Mar; 16(3):553-8. PMID: 17372251.
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    36. Moloshok TD, Klevecz RR, Grant JD, Manion FJ, Speier WF, Ochs MF. Application of Bayesian decomposition for analysing microarray data. Bioinformatics. 2002 Apr; 18(4):566-75. PMID: 12016054.
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