Suzanne Devkota

Title(s)Associate Professor-in-Residence, Medicine
SchoolMedicine
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    University of Illinois, Urbana-Champaign, ILB.S.05/2003Biology/Chemistry
    University of Illinois, Urbana-Champaign, ILM.S.05/2007Nutritional Sciences
    The University of Chicago, Chicago, ILPh.D.06/2012Molecular Metabolism & Nutrition / Gastroenterology
    Harvard Medical School, Boston, MAPost-Doc08/2015Diabetes/Obesity

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Gut microbiome: a biomedical revolution. Nat Rev Gastroenterol Hepatol. 2024 Oct 30. Collado MC, Devkota S, Ghosh TS. PMID: 39478172.
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    2. Bacterial metabolites influence the autofluorescence of Clostridioides difficile. Front Microbiol. 2024; 15:1459795. Ticer TD, Tingler AM, Glover JS, Dooley SA, Kendrick J, Zackular JP, Devkota S, Wu GD, Mahalak K, Engevik A, Engevik MA. PMID: 39439940; PMCID: PMC11493716.
      View in: PubMed   Mentions:
    3. Antibiotic use during influenza infection augments lung eosinophils that impair immunity against secondary bacterial pneumonia. J Clin Invest. 2024 Sep 10. Sanches Santos Rizzo Zuttion M, Parimon T, Bora SA, Yao C, Lagree K, Gao CA, Wunderink RG, Kitsios GD, Morris A, Zhang Y, McVerry BJ, Modes ME, Marchevsky AM, Stripp BR, Soto CM, Wang Y, Merene K, Cho S, Victor BL, Vujkovic-Cvijin I, Gupta S, Cassel S, Sutterwala FS, Devkota S, Underhill DM, Chen P. PMID: 39255040.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    4. Microbes and metabolites in immunity. Immunity. 2024 Sep 10; 57(9):1995-1999. Elinav E, Devkota S, Meisel M, Zhu S, Chu H, Chen H, Puschhof J, McAllister F, Platt RJ, Honda K. PMID: 39260349.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    5. The Gut Microbiota and Diabetes: Research, Translation, and Clinical Applications-2023 Diabetes, Diabetes Care, and Diabetologia Expert Forum. Diabetes Care. 2024 Sep 01; 47(9):1491-1508. Byndloss M, Devkota S, Duca F, Hendrik Niess J, Nieuwdorp M, Orho-Melander M, Sanz Y, Tremaroli V, Zhao L. PMID: 38996003; PMCID: PMC11362125.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    6. The Gut Microbiota and Diabetes: Research, Translation, and Clinical Applications-2023 Diabetes, Diabetes Care, and Diabetologia Expert Forum. Diabetes. 2024 Sep 01; 73(9):1391-1410. Byndloss M, Devkota S, Duca F, Niess JH, Nieuwdorp M, Orho-Melander M, Sanz Y, Tremaroli V, Zhao L. PMID: 38912690; PMCID: PMC11333376.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    7. The gut microbiota and diabetes: research, translation, and clinical applications - 2023 Diabetes, Diabetes Care, and Diabetologia Expert Forum. Diabetologia. 2024 Sep; 67(9):1760-1782. Byndloss M, Devkota S, Duca F, Niess JH, Nieuwdorp M, Orho-Melander M, Sanz Y, Tremaroli V, Zhao L. PMID: 38910152; PMCID: PMC11410996.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    8. The intestinal microbiota contributes to the development of immune-mediated cardiovascular inflammation and vasculitis in mice. bioRxiv. 2024 Jun 02. Jena PK, Wakita D, Gomez AC, Carvalho TT, Atici AE, Narayanan M, Lee Y, Fishbein MC, Cani PD, de Vos WM, Underhill DM, Devkota S, Chen S, Shimada K, Crother TR, Arditi M, Rivas MN. PMID: 38853964; PMCID: PMC11160596.
      View in: PubMed   Mentions:
    9. Microbial aromatic amino acid metabolism is modifiable in fermented food matrices to promote bioactivity. Food Chem. 2024 Oct 01; 454:139798. Kasperek MC, Velasquez Galeas A, Caetano-Silva ME, Xie Z, Ulanov A, La Frano M, Devkota S, Miller MJ, Allen JM. PMID: 38823201.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    10. Our extended microbiome: The human-relevant metabolites and biology of fermented foods. Cell Metab. 2024 Apr 02; 36(4):684-701. Caffrey EB, Sonnenburg JL, Devkota S. PMID: 38569469.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    11. Pre-operative visceral adipose tissue radiodensity is a potentially novel prognostic biomarker for early endoscopic post-operative recurrence in Crohn's disease. World J Gastrointest Surg. 2024 Mar 27; 16(3):740-750. Gu P, Dube S, Gellada N, Choi SY, Win S, Lee YJ, Yang S, Haritunians T, Melmed GY, Vasiliauskas EA, Bonthala N, Syal G, Yarur AJ, Ziring D, Rabizadeh S, Fleshner P, Kallman C, Devkota S, Targan SR, Li D, McGovern DP. PMID: 38577075; PMCID: PMC10989343.
      View in: PubMed   Mentions:
    12. DR3 Regulates Intestinal Epithelial Homeostasis and Regeneration After Intestinal Barrier Injury. Cell Mol Gastroenterol Hepatol. 2023; 16(1):83-105. Shimodaira Y, More SK, Hamade H, Blackwood AY, Abraham JP, Thomas LS, Miller JH, Stamps DT, Castanon SL, Jacob N, Ha CWY, Devkota S, Shih DQ, Targan SR, Michelsen KS. PMID: 37011811; PMCID: PMC10213104.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    13. The molecular consequences of androgen activity in the human breast. Cell Genom. 2023 Mar 08; 3(3):100272. Raths F, Karimzadeh M, Ing N, Martinez A, Yang Y, Qu Y, Lee TY, Mulligan B, Devkota S, Tilley WT, Hickey TE, Wang B, Giuliano AE, Bose S, Goodarzi H, Ray EC, Cui X, Knott SRV. PMID: 36950379; PMCID: PMC10025454.
      View in: PubMed   Mentions: 7     Fields:    
    14. The systemic anti-microbiota IgG repertoire can identify gut bacteria that translocate across gut barrier surfaces. Sci Transl Med. 2022 08 17; 14(658):eabl3927. Vujkovic-Cvijin I, Welles HC, Ha CWY, Huq L, Mistry S, Brenchley JM, Trinchieri G, Devkota S, Belkaid Y. PMID: 35976997; PMCID: PMC9741845.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansAnimalsCells
    15. Gut microbiome and pancreatic cancer cachexia: An evolving relationship. World J Gastrointest Oncol. 2022 Jul 15; 14(7):1218-1226. Hendifar A, Akinsola R, Muranaka H, Osipov A, Thomassian S, Moshayedi N, Yang J, Jacobs J, Devkota S, Bhowmick N, Gong J. PMID: 36051103; PMCID: PMC9305570.
      View in: PubMed   Mentions: 1  
    16. Author Correction: DART takes aim at community editing. Nat Microbiol. 2022 Feb; 7(2):337. Ha CWY, Devkota S. PMID: 34992266.
      View in: PubMed   Mentions:    Fields:    
    17. Conceptual Exchanges for Understanding Free-Living and Host-Associated Microbiomes. mSystems. 2022 02 22; 7(1):e0137421. Pfister CA, Light SH, Bohannan B, Schmidt T, Martiny A, Hynson NA, Devkota S, David L, Whiteson K. PMID: 35014872; PMCID: PMC8751383.
      View in: PubMed   Mentions: 2     Fields:    
    18. DART takes aim at community editing. Nat Microbiol. 2022 01; 7(1):8-9. Ha CWY, Devkota S. PMID: 34873294.
      View in: PubMed   Mentions:    Fields:    
    19. Reporting guidelines for human microbiome research: the STORMS checklist. Nat Med. 2021 11; 27(11):1885-1892. Mirzayi C, Renson A, Genomic Standards Consortium, Massive Analysis and Quality Control Society, Zohra F, Elsafoury S, Geistlinger L, Kasselman LJ, Eckenrode K, van de Wijgert J, Loughman A, Marques FZ, MacIntyre DA, Arumugam M, Azhar R, Beghini F, Bergstrom K, Bhatt A, Bisanz JE, Braun J, Bravo HC, Buck GA, Bushman F, Casero D, Clarke G, Collado MC, Cotter PD, Cryan JF, Demmer RT, Devkota S, Elinav E, Escobar JS, Fettweis J, Finn RD, Fodor AA, Forslund S, Franke A, Furlanello C, Gilbert J, Grice E, Haibe-Kains B, Handley S, Herd P, Holmes S, Jacobs JP, Karstens L, Knight R, Knights D, Koren O, Kwon DS, Langille M, Lindsay B, McGovern D, McHardy AC, McWeeney S, Mueller NT, Nezi L, Olm M, Palm N, Pasolli E, Raes J, Redinbo MR, Rühlemann M, Balfour Sartor R, Schloss PD, Schriml L, Segal E, Shardell M, Sharpton T, Smirnova E, Sokol H, Sonnenburg JL, Srinivasan S, Thingholm LB, Turnbaugh PJ, Upadhyay V, Walls RL, Wilmes P, Yamada T, Zeller G, Zhang M, Zhao N, Zhao L, Bao W, Culhane A, Devanarayan V, Dopazo J, Fan X, Fischer M, Jones W, Kusko R, Mason CE, Mercer TR, Sansone SA, Scherer A, Shi L, Thakkar S, Tong W, Wolfinger R, Hunter C, Segata N, Huttenhower C, Dowd JB, Jones HE, Waldron L. PMID: 34789871; PMCID: PMC9105086.
      View in: PubMed   Mentions: 129     Fields:    Translation:Humans
    20. Bacterial and immune cell co-evolution in the gut. Nat Rev Gastroenterol Hepatol. 2021 10; 18(10):676. Devkota S. PMID: 34316059.
      View in: PubMed   Mentions: 1     Fields:    
    21. Psychobiology of Stress and Adolescent Depression (PSY SAD) Study: Protocol overview for an fMRI-based multi-method investigation. Brain Behav Immun Health. 2021 Nov; 17. Sichko S, Bui TQ, Vinograd M, Shields GS, Saha K, Devkota S, Olvera-Alvarez HA, Carroll JE, Cole SW, Irwin MR, Slavich GM. PMID: 34595481; PMCID: PMC8478351.
      View in: PubMed   Mentions: 3  
    22. Dietary Selection Pressures and Their Impact on the Gut Microbiome. Cell Mol Gastroenterol Hepatol. 2022; 13(1):7-18. Ecklu-Mensah G, Gilbert J, Devkota S. PMID: 34329765; PMCID: PMC8600059.
      View in: PubMed   Mentions: 25     Fields:    Translation:Humans
    23. Gut microbiota mediate the FGF21 adaptive stress response to chronic dietary protein-restriction in mice. Nat Commun. 2021 06 22; 12(1):3838. Martin A, Ecklu-Mensah G, Ha CWY, Hendrick G, Layman DK, Gilbert J, Devkota S. PMID: 34158480; PMCID: PMC8219803.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    24. Lessons learned from the prenatal microbiome controversy. Microbiome. 2021 01 12; 9(1):8. Blaser MJ, Devkota S, McCoy KD, Relman DA, Yassour M, Young VB. PMID: 33436098; PMCID: PMC7805060.
      View in: PubMed   Mentions: 48     Fields:    Translation:HumansAnimals
    25. Oral administration of PEGylated TLR7 ligand ameliorates alcohol-associated liver disease via the induction of IL-22. Proc Natl Acad Sci U S A. 2021 01 05; 118(1). Wang Q, Kim SY, Matsushita H, Wang Z, Pandyarajan V, Matsuda M, Ohashi K, Tsuchiya T, Roh YS, Kiani C, Zhao Y, Chan M, Devkota S, Lu SC, Hayashi T, Carson DA, Seki E. PMID: 33443222; PMCID: PMC7817133.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    26. Editorial: Gastronomic Science. Front Physiol. 2020; 11:612921. Devkota S, Fine LG. PMID: 33192624; PMCID: PMC7649368.
      View in: PubMed   Mentions:
    27. The new microbiology: cultivating the future of microbiome-directed medicine. Am J Physiol Gastrointest Liver Physiol. 2020 12 01; 319(6):G639-G645. Ha CWY, Devkota S. PMID: 32996782; PMCID: PMC7792672.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimals
    28. Translocation of Viable Gut Microbiota to Mesenteric Adipose Drives Formation of Creeping Fat in Humans. Cell. 2020 10 29; 183(3):666-683.e17. Ha CWY, Martin A, Sepich-Poore GD, Shi B, Wang Y, Gouin K, Humphrey G, Sanders K, Ratnayake Y, Chan KSL, Hendrick G, Caldera JR, Arias C, Moskowitz JE, Ho Sui SJ, Yang S, Underhill D, Brady MJ, Knott S, Kaihara K, Steinbaugh MJ, Li H, McGovern DPB, Knight R, Fleshner P, Devkota S. PMID: 32991841; PMCID: PMC7521382.
      View in: PubMed   Mentions: 137     Fields:    Translation:HumansAnimalsCells
    29. The gut microbiome during acute lifestyle transition. Nat Med. 2020 07; 26(7):1013-1015. Devkota S. PMID: 32632191.
      View in: PubMed   Mentions: 2     Fields:    
    30. A Genomic Toolkit for the Mechanistic Dissection of Intractable Human Gut Bacteria. Cell Host Microbe. 2020 06 10; 27(6):1001-1013.e9. Bisanz JE, Soto-Perez P, Noecker C, Aksenov AA, Lam KN, Kenney GE, Bess EN, Haiser HJ, Kyaw TS, Yu FB, Rekdal VM, Ha CWY, Devkota S, Balskus EP, Dorrestein PC, Allen-Vercoe E, Turnbaugh PJ. PMID: 32348781; PMCID: PMC7292766.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansAnimalsCells
    31. Big data and tiny proteins: shining a light on the dark corners of the gut microbiome. Nat Rev Gastroenterol Hepatol. 2020 02; 17(2):68-69. Devkota S. PMID: 31776473.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    32. Gut microbiome, antibiotic use, and immunotherapy responsiveness in cancer. Ann Transl Med. 2019 Dec; 7(Suppl 8):S309. Reed JP, Devkota S, Figlin RA. PMID: 32016028; PMCID: PMC6976491.
      View in: PubMed   Mentions: 12  
    33. Determinants of Microbial Antibiotic Susceptibility: The Commensal Gut Microbiota Perspective. Cell Host Microbe. 2019 11 13; 26(5):574-576. Moskowitz JE, Devkota S. PMID: 31726026.
      View in: PubMed   Mentions:    Fields:    
    34. The gut microbiome and metabolic syndrome. J Clin Invest. 2019 10 01; 129(10):4050-4057. Dabke K, Hendrick G, Devkota S. PMID: 31573550; PMCID: PMC6763239.
      View in: PubMed   Mentions: 284     Fields:    Translation:HumansAnimals
    35. Going Viral: a Novel Role for Bacteriophage in Colorectal Cancer. mBio. 2019 01 22; 10(1). Handley SA, Devkota S. PMID: 30670618; PMCID: PMC6343040.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    36. NLRP12: The Monarch of the Gut. Cell Host Microbe. 2018 09 12; 24(3):326-328. Sadeghi H, Devkota S, Sutterwala FS. PMID: 30212643.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    37. Inflammation-independent TL1A-mediated intestinal fibrosis is dependent on the gut microbiome. Mucosal Immunol. 2018 09; 11(5):1466-1476. Jacob N, Jacobs JP, Kumagai K, Ha CWY, Kanazawa Y, Lagishetty V, Altmayer K, Hamill AM, Von Arx A, Sartor RB, Devkota S, Braun J, Michelsen KS, Targan SR, Shih DQ. PMID: 29988118; PMCID: PMC6162160.
      View in: PubMed   Mentions: 46     Fields:    Translation:HumansAnimalsCells
    38. Hold the Door: Role of the Gut Barrier in Diabetes. Cell Metab. 2018 05 01; 27(5):949-951. Martin A, Devkota S. PMID: 29719231.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    39. Antibiotic effects on gut microbiota and metabolism are host dependent. J Clin Invest. 2016 12 01; 126(12):4430-4443. Fujisaka S, Ussar S, Clish C, Devkota S, Dreyfuss JM, Sakaguchi M, Soto M, Konishi M, Softic S, Altindis E, Li N, Gerber G, Bry L, Kahn CR. PMID: 27775551; PMCID: PMC5127688.
      View in: PubMed   Mentions: 82     Fields:    Translation:AnimalsCells
    40. The changing microbial landscape of Western society: Diet, dwellings and discordance. Mol Metab. 2016 Sep; 5(9):737-42. Broussard JL, Devkota S. PMID: 27617196; PMCID: PMC5004226.
      View in: PubMed   Mentions: 35     Fields:    
    41. MICROBIOME. Prescription drugs obscure microbiome analyses. Science. 2016 Jan 29; 351(6272):452-3. Devkota S. PMID: 26823414.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    42. Interactions between Diet, Bile Acid Metabolism, Gut Microbiota, and Inflammatory Bowel Diseases. Dig Dis. 2015; 33(3):351-6. Devkota S, Chang EB. PMID: 26045269; PMCID: PMC4477270.
      View in: PubMed   Mentions: 66     Fields:    Translation:HumansAnimalsCells
    43. Nutrition, microbiomes, and intestinal inflammation. Curr Opin Gastroenterol. 2013 Nov; 29(6):603-7. Devkota S, Chang EB. PMID: 24100722.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansAnimals
    44. The role of diet in triggering human inflammatory disorders in the modern age. Microbes Infect. 2013 Nov; 15(12):765-74. Huang EY, Devkota S, Moscoso D, Chang EB, Leone VA. PMID: 23876436.
      View in: PubMed   Mentions: 18     Fields:    Translation:Humans
    45. Cancer: An acidic link. Nature. 2013 Jul 04; 499(7456):37-8. Devkota S, Turnbaugh PJ. PMID: 23803768.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    46. Carrageenan-induced colonic inflammation is reduced in Bcl10 null mice and increased in IL-10-deficient mice. Mediators Inflamm. 2013; 2013:397642. Bhattacharyya S, Xue L, Devkota S, Chang E, Morris S, Tobacman JK. PMID: 23766559; PMCID: PMC3677668.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    47. Composition of dietary fat source shapes gut microbiota architecture and alters host inflammatory mediators in mouse adipose tissue. JPEN J Parenter Enteral Nutr. 2013 Nov; 37(6):746-54. Huang EY, Leone VA, Devkota S, Wang Y, Brady MJ, Chang EB. PMID: 23639897; PMCID: PMC3812400.
      View in: PubMed   Mentions: 67     Fields:    Translation:AnimalsCells
    48. Diet, microbes, and host genetics: the perfect storm in inflammatory bowel diseases. J Gastroenterol. 2013 Mar; 48(3):315-21. Leone V, Chang EB, Devkota S. PMID: 23475322; PMCID: PMC3698420.
      View in: PubMed   Mentions: 65     Fields:    Translation:Humans
    49. Diet-induced expansion of pathobionts in experimental colitis: implications for tailored therapies. Gut Microbes. 2013 Mar-Apr; 4(2):172-4. Devkota S, Chang EB. PMID: 23333863; PMCID: PMC3595079.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    50. Lymphotoxin regulates commensal responses to enable diet-induced obesity. Nat Immunol. 2012 Oct; 13(10):947-53. Upadhyay V, Poroyko V, Kim TJ, Devkota S, Fu S, Liu D, Tumanov AV, Koroleva EP, Deng L, Nagler C, Chang EB, Tang H, Fu YX. PMID: 22922363; PMCID: PMC3718316.
      View in: PubMed   Mentions: 69     Fields:    Translation:AnimalsCells
    51. Dietary-fat-induced taurocholic acid promotes pathobiont expansion and colitis in Il10-/- mice. Nature. 2012 Jul 05; 487(7405):104-8. Devkota S, Wang Y, Musch MW, Leone V, Fehlner-Peach H, Nadimpalli A, Antonopoulos DA, Jabri B, Chang EB. PMID: 22722865; PMCID: PMC3393783.
      View in: PubMed   Mentions: 824     Fields:    Translation:AnimalsCells
    52. Increased ratio of dietary carbohydrate to protein shifts the focus of metabolic signaling from skeletal muscle to adipose. Nutr Metab (Lond). 2011 Mar 04; 8(1):13. Devkota S, Layman DK. PMID: 21375752; PMCID: PMC3059285.
      View in: PubMed   Mentions: 4  
    53. Regional mucosa-associated microbiota determine physiological expression of TLR2 and TLR4 in murine colon. PLoS One. 2010 Oct 22; 5(10):e13607. Wang Y, Devkota S, Musch MW, Jabri B, Nagler C, Antonopoulos DA, Chervonsky A, Chang EB. PMID: 21042588; PMCID: PMC2962643.
      View in: PubMed   Mentions: 66     Fields:    Translation:Animals
    54. Protein metabolic roles in treatment of obesity. Curr Opin Clin Nutr Metab Care. 2010 Jul; 13(4):403-7. Devkota S, Layman DK. PMID: 20531180.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    55. A high protein moderate carbohydrate diet fed at discrete meals reduces early progression of N-methyl-N-nitrosourea-induced breast tumorigenesis in rats. Nutr Metab (Lond). 2010 Jan 10; 7:1. Moulton CJ, Valentine RJ, Layman DK, Devkota S, Singletary KW, Wallig MA, Donovan SM. PMID: 20148110; PMCID: PMC2819246.
      View in: PubMed   Mentions: 5  
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