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Bacterial metabolites influence the autofluorescence of Clostridioides difficile. Front Microbiol. 2024; 15:1459795.
Ticer TD, Tingler AM, Glover JS, Dooley SA, Kendrick J, Zackular JP, Devkota S, Wu GD, Mahalak K, Engevik A, Engevik MA. PMID: 39439940; PMCID: PMC11493716.
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PubMed Mentions:
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Antibiotic use during influenza infection augments lung eosinophils that impair immunity against secondary bacterial pneumonia. J Clin Invest. 2024 Sep 10.
Sanches Santos Rizzo Zuttion M, Parimon T, Bora SA, Yao C, Lagree K, Gao CA, Wunderink RG, Kitsios GD, Morris A, Zhang Y, McVerry BJ, Modes ME, Marchevsky AM, Stripp BR, Soto CM, Wang Y, Merene K, Cho S, Victor BL, Vujkovic-Cvijin I, Gupta S, Cassel S, Sutterwala FS, Devkota S, Underhill DM, Chen P. PMID: 39255040.
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PubMed Mentions: Fields:
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Microbes and metabolites in immunity. Immunity. 2024 Sep 10; 57(9):1995-1999.
Elinav E, Devkota S, Meisel M, Zhu S, Chu H, Chen H, Puschhof J, McAllister F, Platt RJ, Honda K. PMID: 39260349.
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PubMed Mentions:
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The Gut Microbiota and Diabetes: Research, Translation, and Clinical Applications-2023 Diabetes, Diabetes Care, and Diabetologia Expert Forum. Diabetes Care. 2024 Sep 01; 47(9):1491-1508.
Byndloss M, Devkota S, Duca F, Hendrik Niess J, Nieuwdorp M, Orho-Melander M, Sanz Y, Tremaroli V, Zhao L. PMID: 38996003; PMCID: PMC11362125.
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PubMed Mentions: Fields:
Translation:
Humans
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The Gut Microbiota and Diabetes: Research, Translation, and Clinical Applications-2023 Diabetes, Diabetes Care, and Diabetologia Expert Forum. Diabetes. 2024 Sep 01; 73(9):1391-1410.
Byndloss M, Devkota S, Duca F, Niess JH, Nieuwdorp M, Orho-Melander M, Sanz Y, Tremaroli V, Zhao L. PMID: 38912690; PMCID: PMC11333376.
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PubMed Mentions: Fields:
Translation:
Humans
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The gut microbiota and diabetes: research, translation, and clinical applications - 2023 Diabetes, Diabetes Care, and Diabetologia Expert Forum. Diabetologia. 2024 Jun 24.
Byndloss M, Devkota S, Duca F, Niess JH, Nieuwdorp M, Orho-Melander M, Sanz Y, Tremaroli V, Zhao L. PMID: 38910152.
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PubMed Mentions:
1 Fields:
Translation:
Humans
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The intestinal microbiota contributes to the development of immune-mediated cardiovascular inflammation and vasculitis in mice. bioRxiv. 2024 Jun 02.
Jena PK, Wakita D, Gomez AC, Carvalho TT, Atici AE, Narayanan M, Lee Y, Fishbein MC, Cani PD, de Vos WM, Underhill DM, Devkota S, Chen S, Shimada K, Crother TR, Arditi M, Rivas MN. PMID: 38853964; PMCID: PMC11160596.
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PubMed Mentions:
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Microbial aromatic amino acid metabolism is modifiable in fermented food matrices to promote bioactivity. Food Chem. 2024 Oct 01; 454:139798.
Kasperek MC, Velasquez Galeas A, Caetano-Silva ME, Xie Z, Ulanov A, La Frano M, Devkota S, Miller MJ, Allen JM. PMID: 38823201.
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PubMed Mentions: Fields:
Translation:
HumansCells
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Our extended microbiome: The human-relevant metabolites and biology of fermented foods. Cell Metab. 2024 Apr 02; 36(4):684-701.
Caffrey EB, Sonnenburg JL, Devkota S. PMID: 38569469.
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PubMed Mentions:
1 Fields:
Translation:
Humans
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Pre-operative visceral adipose tissue radiodensity is a potentially novel prognostic biomarker for early endoscopic post-operative recurrence in Crohn's disease. World J Gastrointest Surg. 2024 Mar 27; 16(3):740-750.
Gu P, Dube S, Gellada N, Choi SY, Win S, Lee YJ, Yang S, Haritunians T, Melmed GY, Vasiliauskas EA, Bonthala N, Syal G, Yarur AJ, Ziring D, Rabizadeh S, Fleshner P, Kallman C, Devkota S, Targan SR, Li D, McGovern DP. PMID: 38577075; PMCID: PMC10989343.
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PubMed Mentions:
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DR3 Regulates Intestinal Epithelial Homeostasis and Regeneration After Intestinal Barrier Injury. Cell Mol Gastroenterol Hepatol. 2023; 16(1):83-105.
Shimodaira Y, More SK, Hamade H, Blackwood AY, Abraham JP, Thomas LS, Miller JH, Stamps DT, Castanon SL, Jacob N, Ha CWY, Devkota S, Shih DQ, Targan SR, Michelsen KS. PMID: 37011811; PMCID: PMC10213104.
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PubMed Mentions:
3 Fields:
Translation:
AnimalsCells
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The molecular consequences of androgen activity in the human breast. Cell Genom. 2023 Mar 08; 3(3):100272.
Raths F, Karimzadeh M, Ing N, Martinez A, Yang Y, Qu Y, Lee TY, Mulligan B, Devkota S, Tilley WT, Hickey TE, Wang B, Giuliano AE, Bose S, Goodarzi H, Ray EC, Cui X, Knott SRV. PMID: 36950379; PMCID: PMC10025454.
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PubMed Mentions:
7 Fields:
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The systemic anti-microbiota IgG repertoire can identify gut bacteria that translocate across gut barrier surfaces. Sci Transl Med. 2022 08 17; 14(658):eabl3927.
Vujkovic-Cvijin I, Welles HC, Ha CWY, Huq L, Mistry S, Brenchley JM, Trinchieri G, Devkota S, Belkaid Y. PMID: 35976997; PMCID: PMC9741845.
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PubMed Mentions:
20 Fields:
Translation:
HumansAnimalsCells
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Gut microbiome and pancreatic cancer cachexia: An evolving relationship. World J Gastrointest Oncol. 2022 Jul 15; 14(7):1218-1226.
Hendifar A, Akinsola R, Muranaka H, Osipov A, Thomassian S, Moshayedi N, Yang J, Jacobs J, Devkota S, Bhowmick N, Gong J. PMID: 36051103; PMCID: PMC9305570.
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PubMed Mentions:
1
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Author Correction: DART takes aim at community editing. Nat Microbiol. 2022 Feb; 7(2):337.
Ha CWY, Devkota S. PMID: 34992266.
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PubMed Mentions: Fields:
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Conceptual Exchanges for Understanding Free-Living and Host-Associated Microbiomes. mSystems. 2022 02 22; 7(1):e0137421.
Pfister CA, Light SH, Bohannan B, Schmidt T, Martiny A, Hynson NA, Devkota S, David L, Whiteson K. PMID: 35014872; PMCID: PMC8751383.
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PubMed Mentions:
2 Fields:
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DART takes aim at community editing. Nat Microbiol. 2022 01; 7(1):8-9.
Ha CWY, Devkota S. PMID: 34873294.
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PubMed Mentions: Fields:
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Reporting guidelines for human microbiome research: the STORMS checklist. Nat Med. 2021 11; 27(11):1885-1892.
Mirzayi C, Renson A, Genomic Standards Consortium, Massive Analysis and Quality Control Society, Zohra F, Elsafoury S, Geistlinger L, Kasselman LJ, Eckenrode K, van de Wijgert J, Loughman A, Marques FZ, MacIntyre DA, Arumugam M, Azhar R, Beghini F, Bergstrom K, Bhatt A, Bisanz JE, Braun J, Bravo HC, Buck GA, Bushman F, Casero D, Clarke G, Collado MC, Cotter PD, Cryan JF, Demmer RT, Devkota S, Elinav E, Escobar JS, Fettweis J, Finn RD, Fodor AA, Forslund S, Franke A, Furlanello C, Gilbert J, Grice E, Haibe-Kains B, Handley S, Herd P, Holmes S, Jacobs JP, Karstens L, Knight R, Knights D, Koren O, Kwon DS, Langille M, Lindsay B, McGovern D, McHardy AC, McWeeney S, Mueller NT, Nezi L, Olm M, Palm N, Pasolli E, Raes J, Redinbo MR, Rühlemann M, Balfour Sartor R, Schloss PD, Schriml L, Segal E, Shardell M, Sharpton T, Smirnova E, Sokol H, Sonnenburg JL, Srinivasan S, Thingholm LB, Turnbaugh PJ, Upadhyay V, Walls RL, Wilmes P, Yamada T, Zeller G, Zhang M, Zhao N, Zhao L, Bao W, Culhane A, Devanarayan V, Dopazo J, Fan X, Fischer M, Jones W, Kusko R, Mason CE, Mercer TR, Sansone SA, Scherer A, Shi L, Thakkar S, Tong W, Wolfinger R, Hunter C, Segata N, Huttenhower C, Dowd JB, Jones HE, Waldron L. PMID: 34789871; PMCID: PMC9105086.
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PubMed Mentions:
127 Fields:
Translation:
Humans
-
Bacterial and immune cell co-evolution in the gut. Nat Rev Gastroenterol Hepatol. 2021 10; 18(10):676.
Devkota S. PMID: 34316059.
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PubMed Mentions:
1 Fields:
-
Psychobiology of Stress and Adolescent Depression (PSY SAD) Study: Protocol overview for an fMRI-based multi-method investigation. Brain Behav Immun Health. 2021 Nov; 17.
Sichko S, Bui TQ, Vinograd M, Shields GS, Saha K, Devkota S, Olvera-Alvarez HA, Carroll JE, Cole SW, Irwin MR, Slavich GM. PMID: 34595481; PMCID: PMC8478351.
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PubMed Mentions:
3
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Dietary Selection Pressures and Their Impact on the Gut Microbiome. Cell Mol Gastroenterol Hepatol. 2022; 13(1):7-18.
Ecklu-Mensah G, Gilbert J, Devkota S. PMID: 34329765; PMCID: PMC8600059.
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PubMed Mentions:
25 Fields:
Translation:
Humans
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Gut microbiota mediate the FGF21 adaptive stress response to chronic dietary protein-restriction in mice. Nat Commun. 2021 06 22; 12(1):3838.
Martin A, Ecklu-Mensah G, Ha CWY, Hendrick G, Layman DK, Gilbert J, Devkota S. PMID: 34158480; PMCID: PMC8219803.
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PubMed Mentions:
17 Fields:
Translation:
AnimalsCells
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Lessons learned from the prenatal microbiome controversy. Microbiome. 2021 01 12; 9(1):8.
Blaser MJ, Devkota S, McCoy KD, Relman DA, Yassour M, Young VB. PMID: 33436098; PMCID: PMC7805060.
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PubMed Mentions:
48 Fields:
Translation:
HumansAnimals
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Oral administration of PEGylated TLR7 ligand ameliorates alcohol-associated liver disease via the induction of IL-22. Proc Natl Acad Sci U S A. 2021 01 05; 118(1).
Wang Q, Kim SY, Matsushita H, Wang Z, Pandyarajan V, Matsuda M, Ohashi K, Tsuchiya T, Roh YS, Kiani C, Zhao Y, Chan M, Devkota S, Lu SC, Hayashi T, Carson DA, Seki E. PMID: 33443222; PMCID: PMC7817133.
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PubMed Mentions:
16 Fields:
Translation:
AnimalsCells
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Editorial: Gastronomic Science. Front Physiol. 2020; 11:612921.
Devkota S, Fine LG. PMID: 33192624; PMCID: PMC7649368.
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The new microbiology: cultivating the future of microbiome-directed medicine. Am J Physiol Gastrointest Liver Physiol. 2020 12 01; 319(6):G639-G645.
Ha CWY, Devkota S. PMID: 32996782; PMCID: PMC7792672.
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PubMed Mentions:
4 Fields:
Translation:
HumansAnimals
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Translocation of Viable Gut Microbiota to Mesenteric Adipose Drives Formation of Creeping Fat in Humans. Cell. 2020 10 29; 183(3):666-683.e17.
Ha CWY, Martin A, Sepich-Poore GD, Shi B, Wang Y, Gouin K, Humphrey G, Sanders K, Ratnayake Y, Chan KSL, Hendrick G, Caldera JR, Arias C, Moskowitz JE, Ho Sui SJ, Yang S, Underhill D, Brady MJ, Knott S, Kaihara K, Steinbaugh MJ, Li H, McGovern DPB, Knight R, Fleshner P, Devkota S. PMID: 32991841; PMCID: PMC7521382.
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PubMed Mentions:
136 Fields:
Translation:
HumansAnimalsCells
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The gut microbiome during acute lifestyle transition. Nat Med. 2020 07; 26(7):1013-1015.
Devkota S. PMID: 32632191.
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PubMed Mentions:
2 Fields:
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A Genomic Toolkit for the Mechanistic Dissection of Intractable Human Gut Bacteria. Cell Host Microbe. 2020 06 10; 27(6):1001-1013.e9.
Bisanz JE, Soto-Perez P, Noecker C, Aksenov AA, Lam KN, Kenney GE, Bess EN, Haiser HJ, Kyaw TS, Yu FB, Rekdal VM, Ha CWY, Devkota S, Balskus EP, Dorrestein PC, Allen-Vercoe E, Turnbaugh PJ. PMID: 32348781; PMCID: PMC7292766.
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PubMed Mentions:
27 Fields:
Translation:
HumansAnimalsCells
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Big data and tiny proteins: shining a light on the dark corners of the gut microbiome. Nat Rev Gastroenterol Hepatol. 2020 02; 17(2):68-69.
Devkota S. PMID: 31776473.
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PubMed Mentions:
2 Fields:
Translation:
Humans
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Gut microbiome, antibiotic use, and immunotherapy responsiveness in cancer. Ann Transl Med. 2019 Dec; 7(Suppl 8):S309.
Reed JP, Devkota S, Figlin RA. PMID: 32016028; PMCID: PMC6976491.
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PubMed Mentions:
12
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Determinants of Microbial Antibiotic Susceptibility: The Commensal Gut Microbiota Perspective. Cell Host Microbe. 2019 11 13; 26(5):574-576.
Moskowitz JE, Devkota S. PMID: 31726026.
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PubMed Mentions: Fields:
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The gut microbiome and metabolic syndrome. J Clin Invest. 2019 10 01; 129(10):4050-4057.
Dabke K, Hendrick G, Devkota S. PMID: 31573550; PMCID: PMC6763239.
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PubMed Mentions:
278 Fields:
Translation:
HumansAnimals
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Going Viral: a Novel Role for Bacteriophage in Colorectal Cancer. mBio. 2019 01 22; 10(1).
Handley SA, Devkota S. PMID: 30670618; PMCID: PMC6343040.
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PubMed Mentions:
11 Fields:
Translation:
HumansCells
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NLRP12: The Monarch of the Gut. Cell Host Microbe. 2018 09 12; 24(3):326-328.
Sadeghi H, Devkota S, Sutterwala FS. PMID: 30212643.
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PubMed Mentions: Fields:
Translation:
Humans
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Inflammation-independent TL1A-mediated intestinal fibrosis is dependent on the gut microbiome. Mucosal Immunol. 2018 09; 11(5):1466-1476.
Jacob N, Jacobs JP, Kumagai K, Ha CWY, Kanazawa Y, Lagishetty V, Altmayer K, Hamill AM, Von Arx A, Sartor RB, Devkota S, Braun J, Michelsen KS, Targan SR, Shih DQ. PMID: 29988118; PMCID: PMC6162160.
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PubMed Mentions:
46 Fields:
Translation:
HumansAnimalsCells
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Hold the Door: Role of the Gut Barrier in Diabetes. Cell Metab. 2018 05 01; 27(5):949-951.
Martin A, Devkota S. PMID: 29719231.
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PubMed Mentions:
9 Fields:
Translation:
Humans
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Antibiotic effects on gut microbiota and metabolism are host dependent. J Clin Invest. 2016 12 01; 126(12):4430-4443.
Fujisaka S, Ussar S, Clish C, Devkota S, Dreyfuss JM, Sakaguchi M, Soto M, Konishi M, Softic S, Altindis E, Li N, Gerber G, Bry L, Kahn CR. PMID: 27775551; PMCID: PMC5127688.
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PubMed Mentions:
81 Fields:
Translation:
AnimalsCells
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The changing microbial landscape of Western society: Diet, dwellings and discordance. Mol Metab. 2016 Sep; 5(9):737-42.
Broussard JL, Devkota S. PMID: 27617196; PMCID: PMC5004226.
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PubMed Mentions:
33 Fields:
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MICROBIOME. Prescription drugs obscure microbiome analyses. Science. 2016 Jan 29; 351(6272):452-3.
Devkota S. PMID: 26823414.
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PubMed Mentions:
15 Fields:
Translation:
Humans
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Interactions between Diet, Bile Acid Metabolism, Gut Microbiota, and Inflammatory Bowel Diseases. Dig Dis. 2015; 33(3):351-6.
Devkota S, Chang EB. PMID: 26045269; PMCID: PMC4477270.
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PubMed Mentions:
66 Fields:
Translation:
HumansAnimalsCells
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Nutrition, microbiomes, and intestinal inflammation. Curr Opin Gastroenterol. 2013 Nov; 29(6):603-7.
Devkota S, Chang EB. PMID: 24100722.
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PubMed Mentions:
12 Fields:
Translation:
HumansAnimals
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The role of diet in triggering human inflammatory disorders in the modern age. Microbes Infect. 2013 Nov; 15(12):765-74.
Huang EY, Devkota S, Moscoso D, Chang EB, Leone VA. PMID: 23876436.
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PubMed Mentions:
18 Fields:
Translation:
Humans
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Cancer: An acidic link. Nature. 2013 Jul 04; 499(7456):37-8.
Devkota S, Turnbaugh PJ. PMID: 23803768.
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PubMed Mentions:
3 Fields:
Translation:
HumansAnimalsCells
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Carrageenan-induced colonic inflammation is reduced in Bcl10 null mice and increased in IL-10-deficient mice. Mediators Inflamm. 2013; 2013:397642.
Bhattacharyya S, Xue L, Devkota S, Chang E, Morris S, Tobacman JK. PMID: 23766559; PMCID: PMC3677668.
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PubMed Mentions:
18 Fields:
Translation:
AnimalsCells
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Composition of dietary fat source shapes gut microbiota architecture and alters host inflammatory mediators in mouse adipose tissue. JPEN J Parenter Enteral Nutr. 2013 Nov; 37(6):746-54.
Huang EY, Leone VA, Devkota S, Wang Y, Brady MJ, Chang EB. PMID: 23639897; PMCID: PMC3812400.
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PubMed Mentions:
67 Fields:
Translation:
AnimalsCells
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Diet, microbes, and host genetics: the perfect storm in inflammatory bowel diseases. J Gastroenterol. 2013 Mar; 48(3):315-21.
Leone V, Chang EB, Devkota S. PMID: 23475322; PMCID: PMC3698420.
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PubMed Mentions:
65 Fields:
Translation:
Humans
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Diet-induced expansion of pathobionts in experimental colitis: implications for tailored therapies. Gut Microbes. 2013 Mar-Apr; 4(2):172-4.
Devkota S, Chang EB. PMID: 23333863; PMCID: PMC3595079.
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PubMed Mentions:
8 Fields:
Translation:
Humans
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Lymphotoxin regulates commensal responses to enable diet-induced obesity. Nat Immunol. 2012 Oct; 13(10):947-53.
Upadhyay V, Poroyko V, Kim TJ, Devkota S, Fu S, Liu D, Tumanov AV, Koroleva EP, Deng L, Nagler C, Chang EB, Tang H, Fu YX. PMID: 22922363; PMCID: PMC3718316.
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PubMed Mentions:
69 Fields:
Translation:
AnimalsCells
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Dietary-fat-induced taurocholic acid promotes pathobiont expansion and colitis in Il10-/- mice. Nature. 2012 Jul 05; 487(7405):104-8.
Devkota S, Wang Y, Musch MW, Leone V, Fehlner-Peach H, Nadimpalli A, Antonopoulos DA, Jabri B, Chang EB. PMID: 22722865; PMCID: PMC3393783.
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PubMed Mentions:
821 Fields:
Translation:
AnimalsCells
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Increased ratio of dietary carbohydrate to protein shifts the focus of metabolic signaling from skeletal muscle to adipose. Nutr Metab (Lond). 2011 Mar 04; 8(1):13.
Devkota S, Layman DK. PMID: 21375752; PMCID: PMC3059285.
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PubMed Mentions:
4
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Regional mucosa-associated microbiota determine physiological expression of TLR2 and TLR4 in murine colon. PLoS One. 2010 Oct 22; 5(10):e13607.
Wang Y, Devkota S, Musch MW, Jabri B, Nagler C, Antonopoulos DA, Chervonsky A, Chang EB. PMID: 21042588; PMCID: PMC2962643.
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PubMed Mentions:
66 Fields:
Translation:
Animals
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Protein metabolic roles in treatment of obesity. Curr Opin Clin Nutr Metab Care. 2010 Jul; 13(4):403-7.
Devkota S, Layman DK. PMID: 20531180.
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PubMed Mentions:
15 Fields:
Translation:
Humans
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A high protein moderate carbohydrate diet fed at discrete meals reduces early progression of N-methyl-N-nitrosourea-induced breast tumorigenesis in rats. Nutr Metab (Lond). 2010 Jan 10; 7:1.
Moulton CJ, Valentine RJ, Layman DK, Devkota S, Singletary KW, Wallig MA, Donovan SM. PMID: 20148110; PMCID: PMC2819246.
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PubMed Mentions:
5