Suzanne Devkota

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Title(s)Associate Professor-in-Residence, Medicine
SchoolMedicine
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    University of Illinois, Urbana-Champaign, ILB.S.05/2003Biology/Chemistry
    University of Illinois, Urbana-Champaign, ILM.S.05/2007Nutritional Sciences
    The University of Chicago, Chicago, ILPh.D.06/2012Molecular Metabolism & Nutrition / Gastroenterology
    Harvard Medical School, Boston, MAPost-Doc08/2015Diabetes/Obesity

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Tryptophan degradation by intestinal Bacteroides induces anti-tumor immunity and limits melanoma growth. Cell Rep Med. 2026 Jul 21; 7(7):102921. Olea XD, Beede K, Pereira G, Scott D, Petucci C, Martens E, Rodionov D, Shah A, Martinez MP, Kim H, Sharma AK, Martin A, Zhang T, Faries MB, Hamid O, Devkota S, Osterman A, Knott S, Voest EE, Ajami NJ, Wargo J, Ramer-Tait AE, Ronai ZA. PMID: 42447866; PMCID: PMC13400165.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    2. Tryptophan degradation by intestinal Bacteroides induces anti-tumor immunity and limits melanoma growth. bioRxiv. 2026 May 11. Diaz Olea X, Beede K, Pereira G, Scott D, Petucci C, Martens E, Rodionov D, Shah A, Martinez MP, Kim H, Sharma AK, Martin A, Zhang T, Faries MB, Hamid O, Devkota S, Osterman A, Knott S, Voest EE, Ajami NJ, Wargo J, Ramer-Tait AE, Ronai ZA. PMID: 42182364; PMCID: PMC13192890.
      View in: PubMed   Mentions:
    3. A searchable metadata network graph for microbiome metabolomics. bioRxiv. 2026 Feb 05. Charron-Lamoureux V, Xing S, Patan A, Walker C, Monter RA, Abiead YE, Zhao HN, Patel L, Weng Y, Gonzalez A, Ackermann G, Deleray V, Gandhi V, Mohanty I, Caraballo-Rodriguez AM, Kvitne KE, Zuffa S, Norman A, Martin A, Chin L, Paz-Gonzalez R, Sala-Climent M, Suryawinata N, Zemlin J, Gouda H, Hu Z, Norton G, Rajkumar P, Molina AJ, Bergstrom J, Pinner M, Giddings S, Aron AT, Liang L, Dahesh S, Lamichhane S, Reilly ER, Nizet V, Skrip A, Lukowski AL, Shore SFH, Ghoshal S, Engevik MA, Horvath TD, Renwick S, Agongo J, Marco ML, Mazmanian SK, Wang M, Yang H, McDonald D, Guma M, Stegmann E, Hernandez Perez N, Stincone P, Kemen E, Pakkir Shah AK, Bode L, Petras D, Siegel D, Raffatellu M, Patterson AD, Devkota S, Jinich A, Knight R, Zengler K, Dorrestein PC. PMID: 41676651; PMCID: PMC12889665.
      View in: PubMed   Mentions:
    4. Gut microbiome, a novel precision medicine biomarker for hepatocellular carcinoma. Front Immunol. 2025; 16:1568962. Chen PJ, Devkota S, Shiao S, Hendifar A, Yang JD. PMID: 41438742; PMCID: PMC12719415.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    5. Calculating fast differential genome coverages among metagenomic sources using micov. Commun Biol. 2025 Nov 20; 8(1):1624. Weng Y, Guccione C, McDonald D, Oles R, Devkota S, Kopylova E, Sepich-Poore GD, Salido RA, Din MO, Song SJ, Curtius K, Chu H, Bartko A, Hasty J, Knight R. PMID: 41266796; PMCID: PMC12635244.
      View in: PubMed   Mentions: Translation:Humans
    6. Interaction between haploinsufficiency of PTPN2 and patient microbiome promotes autoimmune arthritis in mice. J Autoimmun. 2025 Sep; 156:103452. Sendo S, Vela AJ, Ro M, Thiruppathy D, Wilkinson EL, Zhao Z, Hsieh WC, Yang S, Coras R, Bergot AS, Guma M, Nguyen A, McBride DA, Devkota S, Thomas R, Shah NJ, Svensson MND, Zengler K, Stanford SM, Bottini N. PMID: 40752380; PMCID: PMC12974606.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimals
    7. Intestinal Microbiota Contributes to the Development of Cardiovascular Inflammation and Vasculitis in Mice. Circ Res. 2025 Apr 11; 136(8):e53-e72. Jena PK, Wakita D, Gomez AC, Carvalho TT, Atici AE, Aubuchon E, Narayanan M, Lee Y, Fishbein MC, Takasato Y, Kurashima Y, Kiyono H, Cani PD, de Vos WM, Underhill DM, Devkota S, Chen S, Shimada K, Crother TR, Arditi M, Noval Rivas M. PMID: 40026151; PMCID: PMC11985309.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    8. Gut microbiome: a biomedical revolution. Nat Rev Gastroenterol Hepatol. 2024 Dec; 21(12):830-833. Collado MC, Devkota S, Ghosh TS. PMID: 39478172.
      View in: PubMed   Mentions: 6     Fields:    
    9. Bacterial metabolites influence the autofluorescence of Clostridioides difficile. Front Microbiol. 2024; 15:1459795. Ticer TD, Tingler AM, Glover JS, Dooley SA, Kendrick J, Zackular JP, Devkota S, Wu GD, Mahalak K, Engevik A, Engevik MA. PMID: 39439940; PMCID: PMC11493716.
      View in: PubMed   Mentions: 4  
    10. Microbes and metabolites in immunity. Immunity. 2024 09 10; 57(9):1995-1999. Elinav E, Devkota S, Meisel M, Zhu S, Chu H, Chen H, Puschhof J, McAllister F, Platt RJ, Honda K. PMID: 39260349.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    11. The Gut Microbiota and Diabetes: Research, Translation, and Clinical Applications-2023 Diabetes, Diabetes Care, and Diabetologia Expert Forum. Diabetes. 2024 09 01; 73(9):1391-1410. Byndloss M, Devkota S, Duca F, Niess JH, Nieuwdorp M, Orho-Melander M, Sanz Y, Tremaroli V, Zhao L. PMID: 38912690; PMCID: PMC11333376.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    12. The Gut Microbiota and Diabetes: Research, Translation, and Clinical Applications-2023 Diabetes, Diabetes Care, and Diabetologia Expert Forum. Diabetes Care. 2024 09 01; 47(9):1491-1508. Byndloss M, Devkota S, Duca F, Hendrik Niess J, Nieuwdorp M, Orho-Melander M, Sanz Y, Tremaroli V, Zhao L. PMID: 38996003; PMCID: PMC11362125.
      View in: PubMed   Mentions: 18     Fields:    Translation:Humans
    13. The gut microbiota and diabetes: research, translation, and clinical applications - 2023 Diabetes, Diabetes Care, and Diabetologia Expert Forum. Diabetologia. 2024 Sep; 67(9):1760-1782. Byndloss M, Devkota S, Duca F, Niess JH, Nieuwdorp M, Orho-Melander M, Sanz Y, Tremaroli V, Zhao L. PMID: 38910152; PMCID: PMC11410996.
      View in: PubMed   Mentions: 13     Fields:    Translation:Humans
    14. The intestinal microbiota contributes to the development of immune-mediated cardiovascular inflammation and vasculitis in mice. bioRxiv. 2024 Jun 02. Jena PK, Wakita D, Gomez AC, Carvalho TT, Atici AE, Narayanan M, Lee Y, Fishbein MC, Cani PD, de Vos WM, Underhill DM, Devkota S, Chen S, Shimada K, Crother TR, Arditi M, Rivas MN. PMID: 38853964; PMCID: PMC11160596.
      View in: PubMed   Mentions:
    15. Microbial aromatic amino acid metabolism is modifiable in fermented food matrices to promote bioactivity. Food Chem. 2024 Oct 01; 454:139798. Kasperek MC, Velasquez Galeas A, Caetano-Silva ME, Xie Z, Ulanov A, La Frano M, Devkota S, Miller MJ, Allen JM. PMID: 38823201.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    16. The molecular consequences of androgen activity in the human breast. Cell Genom. 2023 Mar 08; 3(3):100272. Raths F, Karimzadeh M, Ing N, Martinez A, Yang Y, Qu Y, Lee TY, Mulligan B, Devkota S, Tilley WT, Hickey TE, Wang B, Giuliano AE, Bose S, Goodarzi H, Ray EC, Cui X, Knott SRV. PMID: 36950379; PMCID: PMC10025454.
      View in: PubMed   Mentions: 19     Fields:    
    17. Reporting guidelines for human microbiome research: the STORMS checklist. Nat Med. 2021 11; 27(11):1885-1892. Mirzayi C, Renson A, Genomic Standards Consortium, Massive Analysis and Quality Control Society, Zohra F, Elsafoury S, Geistlinger L, Kasselman LJ, Eckenrode K, van de Wijgert J, Loughman A, Marques FZ, MacIntyre DA, Arumugam M, Azhar R, Beghini F, Bergstrom K, Bhatt A, Bisanz JE, Braun J, Bravo HC, Buck GA, Bushman F, Casero D, Clarke G, Collado MC, Cotter PD, Cryan JF, Demmer RT, Devkota S, Elinav E, Escobar JS, Fettweis J, Finn RD, Fodor AA, Forslund S, Franke A, Furlanello C, Gilbert J, Grice E, Haibe-Kains B, Handley S, Herd P, Holmes S, Jacobs JP, Karstens L, Knight R, Knights D, Koren O, Kwon DS, Langille M, Lindsay B, McGovern D, McHardy AC, McWeeney S, Mueller NT, Nezi L, Olm M, Palm N, Pasolli E, Raes J, Redinbo MR, Rühlemann M, Balfour Sartor R, Schloss PD, Schriml L, Segal E, Shardell M, Sharpton T, Smirnova E, Sokol H, Sonnenburg JL, Srinivasan S, Thingholm LB, Turnbaugh PJ, Upadhyay V, Walls RL, Wilmes P, Yamada T, Zeller G, Zhang M, Zhao N, Zhao L, Bao W, Culhane A, Devanarayan V, Dopazo J, Fan X, Fischer M, Jones W, Kusko R, Mason CE, Mercer TR, Sansone SA, Scherer A, Shi L, Thakkar S, Tong W, Wolfinger R, Hunter C, Segata N, Huttenhower C, Dowd JB, Jones HE, Waldron L. PMID: 34789871; PMCID: PMC9105086.
      View in: PubMed   Mentions: 247     Fields:    Translation:Humans
    18. Psychobiology of Stress and Adolescent Depression (PSY SAD) Study: Protocol overview for an fMRI-based multi-method investigation. Brain Behav Immun Health. 2021 Nov; 17. Sichko S, Bui TQ, Vinograd M, Shields GS, Saha K, Devkota S, Olvera-Alvarez HA, Carroll JE, Cole SW, Irwin MR, Slavich GM. PMID: 34595481; PMCID: PMC8478351.
      View in: PubMed   Mentions: 5  
    19. A Genomic Toolkit for the Mechanistic Dissection of Intractable Human Gut Bacteria. Cell Host Microbe. 2020 06 10; 27(6):1001-1013.e9. Bisanz JE, Soto-Perez P, Noecker C, Aksenov AA, Lam KN, Kenney GE, Bess EN, Haiser HJ, Kyaw TS, Yu FB, Rekdal VM, Ha CWY, Devkota S, Balskus EP, Dorrestein PC, Allen-Vercoe E, Turnbaugh PJ. PMID: 32348781; PMCID: PMC7292766.
      View in: PubMed   Mentions: 38     Fields:    Translation:HumansAnimalsCells
    20. Big data and tiny proteins: shining a light on the dark corners of the gut microbiome. Nat Rev Gastroenterol Hepatol. 2020 02; 17(2):68-69. Devkota S. PMID: 31776473.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    21. Gut microbiome, antibiotic use, and immunotherapy responsiveness in cancer. Ann Transl Med. 2019 Dec; 7(Suppl 8):S309. Reed JP, Devkota S, Figlin RA. PMID: 32016028; PMCID: PMC6976491.
      View in: PubMed   Mentions: 18  
    22. Determinants of Microbial Antibiotic Susceptibility: The Commensal Gut Microbiota Perspective. Cell Host Microbe. 2019 11 13; 26(5):574-576. Moskowitz JE, Devkota S. PMID: 31726026.
      View in: PubMed   Mentions:    Fields:    
    23. The gut microbiome and metabolic syndrome. J Clin Invest. 2019 10 01; 129(10):4050-4057. Dabke K, Hendrick G, Devkota S. PMID: 31573550; PMCID: PMC6763239.
      View in: PubMed   Mentions: 374     Fields:    Translation:HumansAnimals
    24. Going Viral: a Novel Role for Bacteriophage in Colorectal Cancer. mBio. 2019 01 22; 10(1). Handley SA, Devkota S. PMID: 30670618; PMCID: PMC6343040.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    25. NLRP12: The Monarch of the Gut. Cell Host Microbe. 2018 09 12; 24(3):326-328. Sadeghi H, Devkota S, Sutterwala FS. PMID: 30212643.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    26. Inflammation-independent TL1A-mediated intestinal fibrosis is dependent on the gut microbiome. Mucosal Immunol. 2018 09; 11(5):1466-1476. Jacob N, Jacobs JP, Kumagai K, Ha CWY, Kanazawa Y, Lagishetty V, Altmayer K, Hamill AM, Von Arx A, Sartor RB, Devkota S, Braun J, Michelsen KS, Targan SR, Shih DQ. PMID: 29988118; PMCID: PMC6162160.
      View in: PubMed   Mentions: 61     Fields:    Translation:HumansAnimalsCells
    27. Hold the Door: Role of the Gut Barrier in Diabetes. Cell Metab. 2018 05 01; 27(5):949-951. Martin A, Devkota S. PMID: 29719231.
      View in: PubMed   Mentions: 13     Fields:    Translation:Humans
    28. Antibiotic effects on gut microbiota and metabolism are host dependent. J Clin Invest. 2016 12 01; 126(12):4430-4443. Fujisaka S, Ussar S, Clish C, Devkota S, Dreyfuss JM, Sakaguchi M, Soto M, Konishi M, Softic S, Altindis E, Li N, Gerber G, Bry L, Kahn CR. PMID: 27775551; PMCID: PMC5127688.
      View in: PubMed   Mentions: 93     Fields:    Translation:AnimalsCells
    29. The changing microbial landscape of Western society: Diet, dwellings and discordance. Mol Metab. 2016 Sep; 5(9):737-42. Broussard JL, Devkota S. PMID: 27617196; PMCID: PMC5004226.
      View in: PubMed   Mentions: 36     Fields:    
    30. MICROBIOME. Prescription drugs obscure microbiome analyses. Science. 2016 Jan 29; 351(6272):452-3. Devkota S. PMID: 26823414.
      View in: PubMed   Mentions: 18     Fields:    Translation:Humans
    31. Interactions between Diet, Bile Acid Metabolism, Gut Microbiota, and Inflammatory Bowel Diseases. Dig Dis. 2015; 33(3):351-6. Devkota S, Chang EB. PMID: 26045269; PMCID: PMC4477270.
      View in: PubMed   Mentions: 80     Fields:    Translation:HumansAnimalsCells
    32. Nutrition, microbiomes, and intestinal inflammation. Curr Opin Gastroenterol. 2013 Nov; 29(6):603-7. Devkota S, Chang EB. PMID: 24100722.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansAnimals
    33. The role of diet in triggering human inflammatory disorders in the modern age. Microbes Infect. 2013 Nov; 15(12):765-74. Huang EY, Devkota S, Moscoso D, Chang EB, Leone VA. PMID: 23876436.
      View in: PubMed   Mentions: 19     Fields:    Translation:Humans
    34. Cancer: An acidic link. Nature. 2013 Jul 04; 499(7456):37-8. Devkota S, Turnbaugh PJ. PMID: 23803768.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    35. Carrageenan-induced colonic inflammation is reduced in Bcl10 null mice and increased in IL-10-deficient mice. Mediators Inflamm. 2013; 2013:397642. Bhattacharyya S, Xue L, Devkota S, Chang E, Morris S, Tobacman JK. PMID: 23766559; PMCID: PMC3677668.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    36. Composition of dietary fat source shapes gut microbiota architecture and alters host inflammatory mediators in mouse adipose tissue. JPEN J Parenter Enteral Nutr. 2013 Nov; 37(6):746-54. Huang EY, Leone VA, Devkota S, Wang Y, Brady MJ, Chang EB. PMID: 23639897; PMCID: PMC3812400.
      View in: PubMed   Mentions: 69     Fields:    Translation:AnimalsCells
    37. Diet, microbes, and host genetics: the perfect storm in inflammatory bowel diseases. J Gastroenterol. 2013 Mar; 48(3):315-21. Leone V, Chang EB, Devkota S. PMID: 23475322; PMCID: PMC3698420.
      View in: PubMed   Mentions: 67     Fields:    Translation:Humans
    38. Diet-induced expansion of pathobionts in experimental colitis: implications for tailored therapies. Gut Microbes. 2013 Mar-Apr; 4(2):172-4. Devkota S, Chang EB. PMID: 23333863; PMCID: PMC3595079.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    39. Lymphotoxin regulates commensal responses to enable diet-induced obesity. Nat Immunol. 2012 Oct; 13(10):947-53. Upadhyay V, Poroyko V, Kim TJ, Devkota S, Fu S, Liu D, Tumanov AV, Koroleva EP, Deng L, Nagler C, Chang EB, Tang H, Fu YX. PMID: 22922363; PMCID: PMC3718316.
      View in: PubMed   Mentions: 72     Fields:    Translation:AnimalsCells
    40. Dietary-fat-induced taurocholic acid promotes pathobiont expansion and colitis in Il10-/- mice. Nature. 2012 Jul 05; 487(7405):104-8. Devkota S, Wang Y, Musch MW, Leone V, Fehlner-Peach H, Nadimpalli A, Antonopoulos DA, Jabri B, Chang EB. PMID: 22722865; PMCID: PMC3393783.
      View in: PubMed   Mentions: 961     Fields:    Translation:AnimalsCells
    41. Increased ratio of dietary carbohydrate to protein shifts the focus of metabolic signaling from skeletal muscle to adipose. Nutr Metab (Lond). 2011 Mar 04; 8(1):13. Devkota S, Layman DK. PMID: 21375752; PMCID: PMC3059285.
      View in: PubMed   Mentions: 4  
    42. Regional mucosa-associated microbiota determine physiological expression of TLR2 and TLR4 in murine colon. PLoS One. 2010 Oct 22; 5(10):e13607. Wang Y, Devkota S, Musch MW, Jabri B, Nagler C, Antonopoulos DA, Chervonsky A, Chang EB. PMID: 21042588; PMCID: PMC2962643.
      View in: PubMed   Mentions: 67     Fields:    Translation:Animals
    43. Protein metabolic roles in treatment of obesity. Curr Opin Clin Nutr Metab Care. 2010 Jul; 13(4):403-7. Devkota S, Layman DK. PMID: 20531180.
      View in: PubMed   Mentions: 17     Fields:    Translation:Humans
    44. A high protein moderate carbohydrate diet fed at discrete meals reduces early progression of N-methyl-N-nitrosourea-induced breast tumorigenesis in rats. Nutr Metab (Lond). 2010 Jan 10; 7:1. Moulton CJ, Valentine RJ, Layman DK, Devkota S, Singletary KW, Wallig MA, Donovan SM. PMID: 20148110; PMCID: PMC2819246.
      View in: PubMed   Mentions: 6  
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