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Omai B Garner

Title(s)HS Associate Clinical Professor, Pathology and Laboratory Medicine
SchoolMedicine
Address760 Westwood Plaza A3-251
Los Angeles CA 90024
Phone48748
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    Collapse Research 
    Collapse Research Activities and Funding
    Minority Predoctoral Fellowship Program
    NIH/NIAID F31AI058916Apr 1, 2004 - Mar 31, 2008
    Role: Principal Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Swab-Seq: A high-throughput platform for massively scaled up SARS-CoV-2 testing. medRxiv. 2020 Sep 03. Bloom JS, Jones EM, Gasperini M, Lubock NB, Sathe L, Munugala C, Booeshaghi AS, Brandenberg OF, Guo L, Boocock J, Simpkins SW, Lin I, LaPierre N, Hong D, Zhang Y, Oland G, Choe BJ, Chandrasekaran S, Hilt EE, Butte MJ, Damoiseaux R, Cooper AR, Yin Y, Pachter L, Garner OB, Flint J, Eskin E, Luo C, Kosuri S, Kruglyak L, Arboleda VA. PMID: 32909008.
      View in: PubMed   Mentions:
    2. Diagnostic yield of repeat testing for SARS-CoV-2: Experience from a large health system in Los Angeles. Int J Infect Dis. 2020 Aug 21. Adamson PC, Goodman-Meza D, Vijayan T, Yang S, Garner OB. PMID: 32835787.
      View in: PubMed   Mentions:    Fields:    
    3. Amplicon-Based Next-Generation Sequencing for Detection of Fungi in Formalin-Fixed, Paraffin-Embedded Tissues: Correlation with Histopathology and Clinical Applications. J Mol Diagn. 2020 Jul 29. Larkin PMK, Lawson KL, Contreras DA, Le CQ, Trejo M, Realegeno S, Hilt EE, Chandrasekaran S, Garner OB, Fishbein GA, Yang S. PMID: 32738297.
      View in: PubMed   Mentions:    Fields:    
    4. Randomized trial evaluating clinical impact of RAPid IDentification and Susceptibility testing for Gram Negative bacteremia (RAPIDS-GN). Clin Infect Dis. 2020 May 07. Banerjee R, Komarow L, Virk A, Rajapakse N, Schuetz AN, Dylla B, Earley M, Lok J, Kohner P, Ihde S, Cole N, Hines L, Reed K, Garner OB, Chandrasekaran S, de St Maurice A, Kanatani M, Curello J, Arias R, Swearingen W, Doernberg SB, Patel R. PMID: 32374822.
      View in: PubMed   Mentions: 1     Fields:    
    5. Deep learning-enabled point-of-care sensing using multiplexed paper-based sensors. NPJ Digit Med. 2020; 3:66. Ballard ZS, Joung HA, Goncharov A, Liang J, Nugroho K, Di Carlo D, Garner OB, Ozcan A. PMID: 32411827.
      View in: PubMed   Mentions:
    6. An Unusual Carbapenem Resistant Escherichia coli Carrying Plasmid-mediated AmpC and Mutated ompC in A Patient with Recurrent Urinary Tract Infections. IDCases. 2020; 20:e00781. Larkin PMK, Realegeno S, Ward KW, Garner OB, Yang S. PMID: 32420029.
      View in: PubMed   Mentions:
    7. Noninterruptive Clinical Decision Support Decreases Ordering of Respiratory Viral Panels during Influenza Season. Appl Clin Inform. 2020 03; 11(2):315-322. Escovedo C, Bell D, Cheng E, Garner O, Ziman A, Vangala S, Gounder P, Lerner C. PMID: 32349143.
      View in: PubMed   Mentions:    Fields:    
    8. Coinfections of Two Strains of NDM-1- and OXA-232-Coproducing Klebsiella pneumoniae in a Kidney Transplant Patient. Antimicrob Agents Chemother. 2020 03 24; 64(4). Contreras DA, Fitzwater SP, Nanayakkara DD, Schaenman J, Aldrovandi GM, Garner OB, Yang S. PMID: 31527031.
      View in: PubMed   Mentions: 3     Fields:    
    9. Differential DNA accessibility to polymerase enables 30-minute phenotypic ß-lactam antibiotic susceptibility testing of carbapenem-resistant Enterobacteriaceae. PLoS Biol. 2020 03; 18(3):e3000652. Schoepp NG, Liaw EJ, Winnett A, Savela ES, Garner OB, Ismagilov RF. PMID: 32191697.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    10. Molecular and clinical epidemiology of carbapenem-resistant Enterobacterales in the USA (CRACKLE-2): a prospective cohort study. Lancet Infect Dis. 2020 06; 20(6):731-741. van Duin D, Arias CA, Komarow L, Chen L, Hanson BM, Weston G, Cober E, Garner OB, Jacob JT, Satlin MJ, Fries BC, Garcia-Diaz J, Doi Y, Dhar S, Kaye KS, Earley M, Hujer AM, Hujer KM, Domitrovic TN, Shropshire WC, Dinh A, Manca C, Luterbach CL, Wang M, Paterson DL, Banerjee R, Patel R, Evans S, Hill C, Arias R, Chambers HF, Fowler VG, Kreiswirth BN, Bonomo RA. PMID: 32151332.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    11. Fractal LAMP: Label-Free Analysis of Fractal Precipitate for Digital Loop-Mediated Isothermal Nucleic Acid Amplification. ACS Sens. 2020 02 28; 5(2):385-394. Muñoz HE, Riche CT, Kong JE, van Zee M, Garner OB, Ozcan A, Di Carlo D. PMID: 31902202.
      View in: PubMed   Mentions: 2     Fields:    
    12. Clinical Impact of Metagenomic Next-Generation Sequencing of Plasma Cell-Free DNA for the Diagnosis of Infectious Diseases: A Multicenter Retrospective Cohort Study. Clin Infect Dis. 2020 Jan 14. Hogan CA, Yang S, Garner OB, Green DA, Gomez CA, Dien Bard J, Pinsky BA, Banaei N. PMID: 31942944.
      View in: PubMed   Mentions: 4     Fields:    
    13. Multicenter Clinical Evaluation of Etest Meropenem-Vaborbactam (bioMérieux) for Susceptibility Testing of Enterobacterales (Enterobacteriaceae) and Pseudomonas aeruginosa. J Clin Microbiol. 2019 12 23; 58(1). Jean S, Garrett S, Anglade C, Bridon L, Davies L, Garner OB, Richards J, Wallace M, Wootton M, Burnham CA. PMID: 31619532.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    14. Point-of-Care Serodiagnostic Test for Early-Stage Lyme Disease Using a Multiplexed Paper-Based Immunoassay and Machine Learning. ACS Nano. 2020 01 28; 14(1):229-240. Joung HA, Ballard ZS, Wu J, Tseng DK, Teshome H, Zhang L, Horn EJ, Arnaboldi PM, Dattwyler RJ, Garner OB, Di Carlo D, Ozcan A. PMID: 31849225.
      View in: PubMed   Mentions: 1     Fields:    
    15. Factors associated with repeat rectal Neisseria gonorrhoeae and Chlamydia trachomatis screening following inconclusive nucleic acid amplification testing: A potential missed opportunity for screening. PLoS One. 2019; 14(12):e0226413. Blair CS, Garner OB, Pedone B, Elias S, Comulada WS, Landovitz RJ. PMID: 31830129.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCellsPHPublic Health
    16. Computational cytometer based on magnetically modulated coherent imaging and deep learning. Light Sci Appl. 2019; 8:91. Zhang Y, Ouyang M, Ray A, Liu T, Kong J, Bai B, Kim D, Guziak A, Luo Y, Feizi A, Tsai K, Duan Z, Liu X, Kim D, Cheung C, Yalcin S, Ceylan Koydemir H, Garner OB, Di Carlo D, Ozcan A. PMID: 31645935.
      View in: PubMed   Mentions:
    17. Validation and Retrospective Clinical Evaluation of a Quantitative 16S rRNA Gene Metagenomic Sequencing Assay for Bacterial Pathogen Detection in Body Fluids. J Mol Diagn. 2019 09; 21(5):913-923. Culbreath K, Melanson S, Gale J, Baker J, Li F, Saebo O, Kommedal O, Contreras D, Garner OB, Yang S. PMID: 31229651.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    18. Paper-based multiplexed vertical flow assay for point-of-care testing. Lab Chip. 2019 03 13; 19(6):1027-1034. Joung HA, Ballard ZS, Ma A, Tseng DK, Teshome H, Burakowski S, Garner OB, Di Carlo D, Ozcan A. PMID: 30729974.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    19. A Multi-Level Fit-Based Quality Improvement Initiative to Improve Colorectal Cancer Screening in a Managed Care Population. Clin Transl Gastroenterol. 2018 09 04; 9(8):177. Yu C, Skootsky S, Grossman M, Garner OB, Betlachin A, Esrailian E, Hommes DW, May FP. PMID: 30177700.
      View in: PubMed   Mentions:    Fields:    Translation:HumansPHPublic Health
    20. Ferrodrop Dose-Optimized Digital Quantification of Biomolecules in Low-Volume Samples. Anal Chem. 2018 08 07; 90(15):8881-8888. Kahkeshani S, Kong JE, Wei Q, Tseng D, Garner OB, Ozcan A, Di Carlo D. PMID: 30004217.
      View in: PubMed   Mentions:    Fields:    
    21. Enzyme-Free Nucleic Acid Amplification Assay Using a Cellphone-Based Well Plate Fluorescence Reader. Anal Chem. 2018 01 02; 90(1):690-695. Kim D, Wei Q, Kim DH, Tseng D, Zhang J, Pan E, Garner O, Ozcan A, Di Carlo D. PMID: 29136461.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    22. Ensuring the Quality of Point-of-Care Testing in a Large and Decentralized Ambulatory Care Setting. Am J Clin Pathol. 2017 Oct 01; 148(4):336-344. Arboleda VA, Garner OB. PMID: 28967953.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    23. Clinical Comparison of the NOWDiagnostics' ADEXUSDx Human Chorionic Gonadotropin Point-of-Care Test with the Roche Elecsys hCG + ß2 for the Serum Measurement of Human Chorionic Gonadotropin. J Appl Lab Med. 2017 Sep 01; 2(2):234-237. Ramos E, Garner OB. PMID: 32630983.
      View in: PubMed   Mentions:    Fields:    
    24. Highly Stable and Sensitive Nucleic Acid Amplification and Cell-Phone-Based Readout. ACS Nano. 2017 03 28; 11(3):2934-2943. Kong JE, Wei Q, Tseng D, Zhang J, Pan E, Lewinski M, Garner OB, Ozcan A, Di Carlo D. PMID: 28234452.
      View in: PubMed   Mentions: 10     Fields:    Translation:Cells
    25. High-throughput and automated diagnosis of antimicrobial resistance using a cost-effective cellphone-based micro-plate reader. Sci Rep. 2016 12 15; 6:39203. Feng S, Tseng D, Di Carlo D, Garner OB, Ozcan A. PMID: 27976700.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    26. Homogeneous Entropy-Driven Amplified Detection of Biomolecular Interactions. ACS Nano. 2016 08 23; 10(8):7467-75. Kim D, Garner OB, Ozcan A, Di Carlo D. PMID: 27462995.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    27. Microbial recovery from clot-activating Vacutainers®. Diagn Microbiol Infect Dis. 2016 Aug; 85(4):395-7. Yang S, McHardy IH, Hemarajata P, Wu MT, Garner OB. PMID: 27306117.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    28. Cellphone-Based Hand-Held Microplate Reader for Point-of-Care Testing of Enzyme-Linked Immunosorbent Assays. ACS Nano. 2015 Aug 25; 9(8):7857-66. Berg B, Cortazar B, Tseng D, Ozkan H, Feng S, Wei Q, Chan RY, Burbano J, Farooqui Q, Lewinski M, Di Carlo D, Garner OB, Ozcan A. PMID: 26159546.
      View in: PubMed   Mentions: 35     Fields:    Translation:Humans
    29. Assessment of Reproducibility of Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry for Bacterial and Yeast Identification. J Clin Microbiol. 2015 Jul; 53(7):2349-52. Westblade LF, Garner OB, MacDonald K, Bradford C, Pincus DH, Mochon AB, Jennemann R, Manji R, Bythrow M, Lewinski MA, Burnham CA, Ginocchio CC. PMID: 25926486.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    30. Timing of galectin-1 exposure differentially modulates Nipah virus entry and syncytium formation in endothelial cells. J Virol. 2015 Mar; 89(5):2520-9. Garner OB, Yun T, Pernet O, Aguilar HC, Park A, Bowden TA, Freiberg AN, Lee B, Baum LG. PMID: 25505064.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansCells
    31. Comparison of the Vitek MS and Bruker Microflex LT MALDI-TOF MS platforms for routine identification of commonly isolated bacteria and yeast in the clinical microbiology laboratory. Diagn Microbiol Infect Dis. 2015 Jan; 81(1):27-33. Deak E, Charlton CL, Bobenchik AM, Miller SA, Pollett S, McHardy IH, Wu MT, Garner OB. PMID: 25446889.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansAnimalsCells
    32. Relative EBV antibody concentrations and cost of standard IVIG and CMV-IVIG for PTLD prophylaxis in solid organ transplant patients. Pediatr Transplant. 2014 Sep; 18(6):599-601. Ramirez-Avila L, Garner OB, Cherry JD. PMID: 25041939.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    33. Detection of human viral pathogens: conventional versus molecular approaches. MLO Med Lab Obs. 2014 Jul; 46(7):8, 10-2; quiz 14. Wu MT, Garner OB. PMID: 25158395.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    34. Microbe-Host Interactions are Positively and Negatively Regulated by Galectin-Glycan Interactions. Front Immunol. 2014; 5:284. Baum LG, Garner OB, Schaefer K, Lee B. PMID: 24995007.
      View in: PubMed   Mentions: 22     Fields:    
    35. Multicenter validation of the VITEK MS v2.0 MALDI-TOF mass spectrometry system for the identification of fastidious gram-negative bacteria. Diagn Microbiol Infect Dis. 2014 Feb; 78(2):129-31. Branda JA, Rychert J, Burnham CA, Bythrow M, Garner OB, Ginocchio CC, Jennemann R, Lewinski MA, Manji R, Mochon AB, Procop GW, Richter SS, Sercia LF, Westblade LF, Ferraro MJ. PMID: 24321357.
      View in: PubMed   Mentions: 12     Fields:    Translation:Cells
    36. Reply to "risks of 'blind' automated identification systems in medical microbiology". J Clin Microbiol. 2013 Nov; 51(11):3912. Westblade LF, Jennemann R, Branda JA, Bythrow M, Ferraro MJ, Garner OB, Ginocchio CC, Lewinski MA, Manji R, Mochon AB, Procop GW, Richter SS, Rychert JA, Sercia L, Burnham CA. PMID: 24133054.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimals
    37. Multi-center evaluation of the VITEK® MS system for mass spectrometric identification of non-Enterobacteriaceae Gram-negative bacilli. Eur J Clin Microbiol Infect Dis. 2014 Mar; 33(3):337-46. Manji R, Bythrow M, Branda JA, Burnham CA, Ferraro MJ, Garner OB, Jennemann R, Lewinski MA, Mochon AB, Procop GW, Richter SS, Rychert JA, Sercia L, Westblade LF, Ginocchio CC. PMID: 24019163.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    38. Multi-centre evaluation of mass spectrometric identification of anaerobic bacteria using the VITEK® MS system. Clin Microbiol Infect. 2014 Apr; 20(4):335-9. Garner O, Mochon A, Branda J, Burnham CA, Bythrow M, Ferraro M, Ginocchio C, Jennemann R, Manji R, Procop GW, Richter S, Rychert J, Sercia L, Westblade L, Lewinski M. PMID: 23927597.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansCells
    39. Identification of Enterobacteriaceae by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry using the VITEK MS system. Eur J Clin Microbiol Infect Dis. 2013 Dec; 32(12):1571-8. Richter SS, Sercia L, Branda JA, Burnham CA, Bythrow M, Ferraro MJ, Garner OB, Ginocchio CC, Jennemann R, Lewinski MA, Manji R, Mochon AB, Rychert JA, Westblade LF, Procop GW. PMID: 23818163.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansCells
    40. Multicenter study evaluating the Vitek MS system for identification of medically important yeasts. J Clin Microbiol. 2013 Jul; 51(7):2267-72. Westblade LF, Jennemann R, Branda JA, Bythrow M, Ferraro MJ, Garner OB, Ginocchio CC, Lewinski MA, Manji R, Mochon AB, Procop GW, Richter SS, Rychert JA, Sercia L, Burnham CA. PMID: 23658267.
      View in: PubMed   Mentions: 27     Fields:    Translation:HumansAnimals
    41. Multicenter evaluation of the Vitek MS matrix-assisted laser desorption ionization-time of flight mass spectrometry system for identification of Gram-positive aerobic bacteria. J Clin Microbiol. 2013 Jul; 51(7):2225-31. Rychert J, Burnham CA, Bythrow M, Garner OB, Ginocchio CC, Jennemann R, Lewinski MA, Manji R, Mochon AB, Procop GW, Richter SS, Sercia L, Westblade LF, Ferraro MJ, Branda JA. PMID: 23658261.
      View in: PubMed   Mentions: 37     Fields:    Translation:HumansCells
    42. N-sulfation of heparan sulfate regulates early branching events in the developing mammary gland. J Biol Chem. 2012 Dec 07; 287(50):42064-70. Bush KT, Crawford BE, Garner OB, Nigam KB, Esko JD, Nigam SK. PMID: 23060443.
      View in: PubMed   Mentions: 8     Fields:    Translation:Animals
    43. Bacterial dispersal associated with speech in the setting of intravitreous injections. Arch Ophthalmol. 2011 Dec; 129(12):1551-4. Wen JC, McCannel CA, Mochon AB, Garner OB. PMID: 21825179.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCellsPHPublic Health
    44. Stage-dependent regulation of mammary ductal branching by heparan sulfate and HGF-cMet signaling. Dev Biol. 2011 Jul 15; 355(2):394-403. Garner OB, Bush KT, Nigam KB, Yamaguchi Y, Xu D, Esko JD, Nigam SK. PMID: 21586278.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    45. New Delhi metallo-ß-lactamase (NDM-1)-producing Klebsiella pneumoniae: case report and laboratory detection strategies. J Clin Microbiol. 2011 Apr; 49(4):1667-70. Mochon AB, Garner OB, Hindler JA, Krogstad P, Ward KW, Lewinski MA, Rasheed JK, Anderson KF, Limbago BM, Humphries RM. PMID: 21325558.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansCells
    46. Endothelial galectin-1 binds to specific glycans on nipah virus fusion protein and inhibits maturation, mobility, and function to block syncytia formation. PLoS Pathog. 2010 Jul 15; 6(7):e1000993. Garner OB, Aguilar HC, Fulcher JA, Levroney EL, Harrison R, Wright L, Robinson LR, Aspericueta V, Panico M, Haslam SM, Morris HR, Dell A, Lee B, Baum LG. PMID: 20657665.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
    47. Loss of the heparan sulfate sulfotransferase, Ndst1, in mammary epithelial cells selectively blocks lobuloalveolar development in mice. PLoS One. 2010 May 18; 5(5):e10691. Crawford BE, Garner OB, Bishop JR, Zhang DY, Bush KT, Nigam SK, Esko JD. PMID: 20502530.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    48. Galectin-glycan lattices regulate cell-surface glycoprotein organization and signalling. Biochem Soc Trans. 2008 Dec; 36(Pt 6):1472-7. Garner OB, Baum LG. PMID: 19021578.
      View in: PubMed   Mentions: 80     Fields:    Translation:HumansAnimalsCells
    49. Small changes in lymphocyte development and activation in mice through tissue-specific alteration of heparan sulphate. Immunology. 2008 Nov; 125(3):420-9. Garner OB, Yamaguchi Y, Esko JD, Videm V. PMID: 18479348.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    50. Guanidinylated neomycin delivers large, bioactive cargo into cells through a heparan sulfate-dependent pathway. J Biol Chem. 2007 May 04; 282(18):13585-91. Elson-Schwab L, Garner OB, Schuksz M, Crawford BE, Esko JD, Tor Y. PMID: 17311923.
      View in: PubMed   Mentions: 24     Fields:    Translation:AnimalsCells
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